@Override
public void run(final TaskMonitor taskMonitor) {
if (network == null) network = appMgr.getCurrentNetwork();
Collection<CyNetworkView> views = viewMgr.getNetworkViews(network);
nodes = nodeList.getValue();
for (CyNetworkView view : views) {
Set<View<CyNode>> nodeViews = new HashSet<View<CyNode>>();
if (nodes == null || nodes.size() == 0) {
nodeViews = CyLayoutAlgorithm.ALL_NODE_VIEWS;
} else {
for (CyNode node : nodes) nodeViews.add(view.getNodeView(node));
}
insertTasksAfterCurrentTask(
algorithm.createTaskIterator(view, layoutContext, nodeViews, getLayoutAttribute()));
}
}
@Tunable(description = "Nodes to layout", context = "nogui")
public NodeList getnodeList() {
if (network == null) network = appMgr.getCurrentNetwork();
nodeList.setNetwork(network);
return nodeList;
}