private boolean sampleStartsWithAllowedPrefix(Set<Prefix> allowedPrefix, Sample s) {
boolean result = false;
for (Prefix prefix : allowedPrefix) {
if (s.getSampleNumber().getValue().startsWith(prefix.getPrefix())) {
return true;
}
;
}
return result;
}
public ResponseEntity<?> mint(Samples samples, boolean test, Principal user) {
boolean isXMLValid = true;
Schema schema = null;
// 2. VALIDATE XML ====================================================
SchemaFactory sf = SchemaFactory.newInstance(XMLConstants.W3C_XML_SCHEMA_NS_URI);
try {
URL schemaUrl = new URL(this.IGSN_CSIRO_XSD_URL);
schema = sf.newSchema(schemaUrl);
} catch (SAXException e) {
e.printStackTrace();
return new ResponseEntity<String>(
"Failure retriving schema : " + e.getLocalizedMessage(), HttpStatus.BAD_REQUEST);
} catch (MalformedURLException e) {
log.error("URL malformed for schema location. Recheck config.properties file again.");
return new ResponseEntity<String>(
"Failure retriving schema : " + e.getLocalizedMessage(), HttpStatus.BAD_REQUEST);
}
try {
JAXBContext jc = JAXBContext.newInstance(Samples.class);
Marshaller marshaller = jc.createMarshaller();
marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, Boolean.TRUE);
marshaller.setSchema(schema);
marshaller.marshal(samples, new DefaultHandler());
} catch (JAXBException e) {
e.printStackTrace();
isXMLValid = false;
return new ResponseEntity<String>(
"XML validation failed : " + e.getLocalizedMessage(), HttpStatus.BAD_REQUEST);
}
// 3. VALIDATE SUBNAMESPACE BASED ON USER NAME
// =============================
String usr = null;
List<MintEventLog> mintEventLogs = new ArrayList<MintEventLog>();
if (isXMLValid) {
usr = user.getName();
Set<Prefix> allowedPrefix = prefixEntityService.searchByUser(usr);
for (Sample s : samples.getSample()) {
MintEventLog mintEventLog = new MintEventLog(s.getSampleNumber().getValue());
if (sampleStartsWithAllowedPrefix(allowedPrefix, s)) {
if (s.getLogElement().getEvent().equals(EventType.SUBMITTED)
|| s.getLogElement().getEvent().equals(EventType.UPDATED)) {
try {
SimpleDateFormat metadataDateFormat =
new SimpleDateFormat("YYYY-MM-dd'T'HH:mm:ssXXX");
String igsn =
this.mintService.createRegistryXML(
s.getSampleNumber().getValue(),
s.getLandingPage(),
metadataDateFormat.format(new Date()),
test,
s.getLogElement().getEvent().value());
mintEventLog.setMintLog(MintErrorCode.MINT_SUCCESS, null);
mintEventLog.setHandle("http://hdl.handle.net/" + igsn);
} catch (Exception e) {
mintEventLog.setMintLog(MintErrorCode.MINT_FAILURE, e.getMessage());
mintEventLog.setDatabaseLog(DatabaseErrorCode.NOT_ATTEMPTED, "");
mintEventLogs.add(mintEventLog);
continue;
}
}
try {
if (test) {
sampleEntityService.testInsertSample(s, usr);
} else if (s.getLogElement().getEvent().equals(EventType.SUBMITTED)) {
sampleEntityService.insertSample(s, usr);
} else if (s.getLogElement().getEvent().equals(EventType.DESTROYED)) {
sampleEntityService.destroySample(s);
} else if (s.getLogElement().getEvent().equals(EventType.DEPRECATED)) {
sampleEntityService.deprecateSample(s);
} else if (s.getLogElement().getEvent().equals(EventType.UPDATED)) {
sampleEntityService.updateSample(s, usr);
}
mintEventLog.setDatabaseLog(DatabaseErrorCode.UPDATE_SUCCESS, null);
mintEventLogs.add(mintEventLog);
} catch (Exception e) {
if (e instanceof javax.persistence.PersistenceException
&& e.getCause().getCause().getMessage().contains("duplicate key value")) {
mintEventLog.setDatabaseLog(DatabaseErrorCode.DUPLICATE_KEY, e.getMessage());
mintEventLogs.add(mintEventLog);
} else {
mintEventLog.setDatabaseLog(DatabaseErrorCode.UPDATE_ERROR, e.getMessage());
mintEventLogs.add(mintEventLog);
}
}
} else {
mintEventLog.setMintLog(
MintErrorCode.PREFIX_UNREGISTERED,
"The prefix is not registered to the user:"******"");
mintEventLogs.add(mintEventLog);
}
}
}
return new ResponseEntity<List<MintEventLog>>(mintEventLogs, HttpStatus.OK);
}
