/**
* Create a new ExactCallLogger writing it's output to outputFile
*
* @param outputFile
*/
public ExactCallLogger(final File outputFile) {
try {
callReport =
new PrintStream(new BufferedOutputStream(new FileOutputStream(outputFile), 10000000));
callReport.println(Utils.join("\t", Arrays.asList("loc", "variable", "key", "value")));
} catch (FileNotFoundException e) {
throw new UserException.CouldNotCreateOutputFile(outputFile, e);
}
}
@Requires({
"vc != null",
"variable != null",
"key != null",
"value != null",
"callReport != null"
})
private void printCallElement(
final VariantContext vc, final Object variable, final Object key, final Object value) {
final String loc = String.format("%s:%d", vc.getChr(), vc.getStart());
callReport.println(Utils.join("\t", Arrays.asList(loc, variable, key, value)));
}
