コード例 #1
0
  @Test
  public void testNullStratifiedPerReadAlleleLikelihoodMap() throws Exception {
    final Map<String, PerReadAlleleLikelihoodMap> perReadAlleleLikelihoodMap = null;
    final VariantContext vc = makeVC();
    final ReferenceContext referenceContext = null;
    final InfoFieldAnnotation cov = new RMSMappingQuality();
    final Map<String, Object> annotate =
        cov.annotate(referenceContext, vc, perReadAlleleLikelihoodMap);
    Assert.assertNull(annotate);

    Assert.assertEquals(cov.getDescriptions().size(), 1);
    Assert.assertEquals(cov.getDescriptions().get(0).getID(), VCFConstants.RMS_MAPPING_QUALITY_KEY);
  }
コード例 #2
0
 @Test
 public void testDescriptions() throws Exception {
   final InfoFieldAnnotation cov = new RMSMappingQuality();
   Assert.assertEquals(cov.getDescriptions().size(), 1);
   Assert.assertEquals(cov.getDescriptions().get(0).getID(), VCFConstants.RMS_MAPPING_QUALITY_KEY);
 }