@Override
public void actionPerformed(ActionEvent ae) {
String cmd = ae.getActionCommand();
if (cmd.equals("New Symmetry Analysis")) SymmetryGui.getInstance();
if (symm == null) logger.error("Currently not displaying a symmetry!");
try {
if (cmd.equals("Repeats Superposition")) {
MultipleAlignmentJmol j = SymmetryDisplay.displayRepeats(symm);
String s = SymmetryDisplay.printSymmetryAxes(symm);
j.evalString(s);
} else if (cmd.equals("Multiple Structure Alignment")) {
MultipleAlignmentJmol j = SymmetryDisplay.displayFull(symm);
String s = SymmetryDisplay.printSymmetryAxes(symm);
j.evalString(s);
} else if (cmd.equals("Optimal Self Alignment")) {
Atom[] cloned = StructureTools.cloneAtomArray(symm.getAtoms());
AbstractAlignmentJmol jmol =
StructureAlignmentDisplay.display(symm.getSelfAlignment(), symm.getAtoms(), cloned);
RotationAxis axis = new RotationAxis(symm.getSelfAlignment());
jmol.evalString(axis.getJmolScript(symm.getAtoms()));
jmol.setTitle(SymmetryDisplay.getSymmTitle(symm));
} else if (cmd.equals("Show Symmetry Group")) {
String script = SymmetryDisplay.printSymmetryGroup(symm);
jmol.evalString(script);
} else if (cmd.equals("Show Symmetry Axes")) {
String s = SymmetryDisplay.printSymmetryAxes(symm);
jmol.evalString(s);
}
} catch (Exception e) {
logger.error("Could not complete display option", e);
}
}
