private void importReportFromFilePerformed(AjaxRequestTarget target) {
OperationResult result = new OperationResult(OPERATION_IMPORT_REPORT);
FileUploadField file =
(FileUploadField)
get(createComponentPath(ID_MAIN_FORM, ID_INPUT, ID_INPUT_FILE, ID_FILE_INPUT));
final FileUpload uploadedFile = file.getFileUpload();
if (uploadedFile == null) {
error(getString("PageNewReport.message.nullFile"));
target.add(getFeedbackPanel());
return;
}
InputStream stream = null;
File newFile = null;
try {
// Create new file
MidPointApplication application = getMidpointApplication();
WebApplicationConfiguration config = application.getWebApplicationConfiguration();
File folder = new File(config.getImportFolder());
if (!folder.exists() || !folder.isDirectory()) {
folder.mkdir();
}
newFile = new File(folder, uploadedFile.getClientFileName());
// Check new file, delete if it already exists
if (newFile.exists()) {
newFile.delete();
}
// Save file
// Task task = createSimpleTask(OPERATION_IMPORT_FILE);
newFile.createNewFile();
uploadedFile.writeTo(newFile);
InputStreamReader reader = new InputStreamReader(new FileInputStream(newFile), "utf-8");
// reader.
stream = new ReaderInputStream(reader, reader.getEncoding());
byte[] reportIn = IOUtils.toByteArray(stream);
setResponsePage(new PageReport(new ReportDto(Base64.encodeBase64(reportIn))));
} catch (Exception ex) {
result.recordFatalError("Couldn't import file.", ex);
LoggingUtils.logException(LOGGER, "Couldn't import file", ex);
} finally {
if (stream != null) {
IOUtils.closeQuietly(stream);
}
if (newFile != null) {
FileUtils.deleteQuietly(newFile);
}
}
showResult(result);
target.add(getFeedbackPanel());
}
@SuppressWarnings("unchecked")
private void setSelectedCustomFieldsFromFile() {
if (fileUploadField.getFileUpload() != null) {
ArkFunction arkFunction =
iArkCommonService.getArkFunctionByName(
au.org.theark.core.Constants.FUNCTION_KEY_VALUE_PHENO_COLLECTION);
Long studyId =
(Long)
SecurityUtils.getSubject()
.getSession()
.getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
Study study = iArkCommonService.getStudy(studyId);
ArrayList<CustomField> selectedCustomFields =
(ArrayList<CustomField>)
iArkCommonService.matchCustomFieldsFromInputFile(
fileUploadField.getFileUpload(), study, arkFunction);
cpModel.getObject().setSelectedCustomFields(selectedCustomFields);
}
initCustomFieldPalette();
arkCrudContainerVO.getDetailPanelFormContainer().addOrReplace(customFieldPalette);
}
/** @see Form#onSubmit() */
@Override
protected void onSubmit() {
final String project = identifier.getModel().getObject();
try {
final FileUpload upload = file.getFileUpload();
if (upload != null) {
File dir = projects.reserveResourceId(project);
// File target = new File(dir, upload.getClientFileName());
String type = upload.getContentType();
if (checkContentType(type)) {
// IOUtils.copy(upload.getInputStream(), new FileOutputStream(target));
// try extracting the archive
IOUtils.extract(dir, new BufferedInputStream(upload.getInputStream()));
// trigger scan after upload
projects.triggerScan();
info("Successfully uploaded project");
onUploadSuccess();
} else {
projects.releaseResourceId(project);
error(getTypeErrorMessage(type));
}
} else {
warn("Please provide a file for upload");
}
} catch (ScavengerException e) {
error(e.getMessage());
} catch (Exception e) {
projects.releaseResourceId(project);
log.error("Error while uploading file", e);
error("Error saving the file");
}
}
private FileUpload getUploadedFile() {
FileUploadField file =
(FileUploadField)
get(createComponentPath(ID_MAIN_FORM, ID_INPUT, ID_INPUT_FILE, ID_FILE_INPUT));
return file.getFileUpload();
}
