private void createUpdateElisaList(List<AnalysisItem> resultItems) {
for (AnalysisItem resultItem : resultItems) {
if (resultItem.getIsAccepted()) {
List<Analysis> acceptedAnalysisList = createAnalysisFromElisaAnalysisItem(resultItem);
for (Analysis analysis : acceptedAnalysisList) {
analysis.setStatusId(StatusService.getInstance().getStatusID(AnalysisStatus.Finalized));
analysisUpdateList.add(analysis);
}
}
if (resultItem.getIsRejected()) {
List<Analysis> rejectedAnalysisList = createAnalysisFromElisaAnalysisItem(resultItem);
for (Analysis analysis : rejectedAnalysisList) {
analysis.setStatusId(
StatusService.getInstance().getStatusID(AnalysisStatus.BiologistRejected));
analysisUpdateList.add(analysis);
}
}
}
}
private void setSampleFinishedStatuses() {
sampleFinishedStatus = new ArrayList<Integer>();
sampleFinishedStatus.add(
Integer.parseInt(StatusService.getInstance().getStatusID(AnalysisStatus.Finalized)));
sampleFinishedStatus.add(
Integer.parseInt(StatusService.getInstance().getStatusID(AnalysisStatus.Canceled)));
sampleFinishedStatus.add(
Integer.parseInt(
StatusService.getInstance().getStatusID(AnalysisStatus.NonConforming_depricated)));
}
private void checkIfSamplesFinished(List<AnalysisItem> resultItemList) {
sampleUpdateList = new ArrayList<Sample>();
String currentSampleId = "";
boolean sampleFinished = true;
for (AnalysisItem analysisItem : resultItemList) {
String analysisSampleId =
sampleDAO.getSampleByAccessionNumber(analysisItem.getAccessionNumber()).getId();
if (!analysisSampleId.equals(currentSampleId)) {
currentSampleId = analysisSampleId;
List<Analysis> analysisList = analysisDAO.getAnalysesBySampleId(currentSampleId);
for (Analysis analysis : analysisList) {
if (!sampleFinishedStatus.contains(Integer.parseInt(analysis.getStatusId()))) {
sampleFinished = false;
break;
}
}
if (sampleFinished) {
Sample sample = new Sample();
sample.setId(currentSampleId);
sampleDAO.getData(sample);
sample.setStatusId(StatusService.getInstance().getStatusID(OrderStatus.Finished));
sampleUpdateList.add(sample);
}
sampleFinished = true;
}
}
}
private void createUpdateList(List<AnalysisItem> analysisItems, boolean areListeners) {
List<String> analysisIdList = new ArrayList<String>();
for (AnalysisItem analysisItem : analysisItems) {
if (!analysisItem.isReadOnly() && analysisItemWillBeUpdated(analysisItem)) {
AnalysisService analysisService = new AnalysisService(analysisItem.getAnalysisId());
Analysis analysis = analysisService.getAnalysis();
NoteService noteService = new NoteService(analysis);
analysis.setSysUserId(currentUserId);
if (!analysisIdList.contains(analysis.getId())) {
if (analysisItem.getIsAccepted()) {
analysis.setStatusId(StatusService.getInstance().getStatusID(AnalysisStatus.Finalized));
analysis.setReleasedDate(new java.sql.Date(Calendar.getInstance().getTimeInMillis()));
analysisIdList.add(analysis.getId());
analysisUpdateList.add(analysis);
}
if (analysisItem.getIsRejected()) {
analysis.setStatusId(
StatusService.getInstance().getStatusID(AnalysisStatus.BiologistRejected));
analysisIdList.add(analysis.getId());
analysisUpdateList.add(analysis);
}
}
createNeededNotes(analysisItem, noteService);
if (areResults(analysisItem)) {
List<Result> results =
createResultFromAnalysisItem(analysisItem, analysisService, noteService);
for (Result result : results) {
resultUpdateList.add(result);
if (areListeners) {
addResultSets(analysis, result);
}
}
}
}
}
}