private void submitSiteEventDefinitions(StudyBean site) {
FormProcessor fp = new FormProcessor(request);
ArrayList<StudyEventDefinitionBean> seds = new ArrayList<StudyEventDefinitionBean>();
CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
seds = (ArrayList<StudyEventDefinitionBean>) session.getAttribute("definitions");
HashMap<String, Boolean> changes = (HashMap<String, Boolean>) session.getAttribute("changed");
for (StudyEventDefinitionBean sed : seds) {
EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
ArrayList<EventDefinitionCRFBean> edcs = sed.getCrfs();
for (EventDefinitionCRFBean edcBean : edcs) {
int edcStatusId = edcBean.getStatus().getId();
if (edcStatusId == 5 || edcStatusId == 7) {
} else {
boolean changed = changes.get(sed.getId() + "-" + edcBean.getId());
if (changed) {
edcBean.setParentId(edcBean.getId());
edcBean.setStudyId(site.getId());
edcBean.setUpdater(ub);
edcBean.setUpdatedDate(new Date());
logger.debug("create for the site");
edcdao.create(edcBean);
}
}
}
}
session.removeAttribute("definitions");
session.removeAttribute("changed");
session.removeAttribute("sdvOptions");
}
/**
* This method creates a List of DisplaySectionBeans, returning them in the order that the
* sections appear in a CRF. This List is "lazily" initialized the first time it is requested.
*
* @return A List of DisplaySectionBeans.
* @see org.akaza.openclinica.control.managestudy.PrintCRFServlet
* @see org.akaza.openclinica.control.managestudy.PrintDataEntryServlet
*/
public List<DisplaySectionBean> getDisplaySectionBeans() {
FormBeanUtil formBeanUtil;
ViewPersistanceHandler persistanceHandler;
ArrayList<SectionBean> allCrfSections;
// DAO classes for getting item definitions
SectionDAO sectionDao;
CRFVersionDAO crfVersionDao;
if (displaySectionBeans == null) {
displaySectionBeans = new ArrayList<DisplaySectionBean>();
formBeanUtil = new FormBeanUtil();
if (hasStoredData) persistanceHandler = new ViewPersistanceHandler();
// We need a CRF version id to populate the form display
if (this.crfVersionId == 0) {
return displaySectionBeans;
}
sectionDao = new SectionDAO(dataSource);
allCrfSections = (ArrayList) sectionDao.findByVersionId(this.crfVersionId);
// for the purposes of null values, try to obtain a valid
// eventCrfDefinition id
EventDefinitionCRFBean eventDefBean = null;
EventCRFBean eventCRFBean = new EventCRFBean();
if (eventCRFId > 0) {
EventCRFDAO ecdao = new EventCRFDAO(dataSource);
eventCRFBean = (EventCRFBean) ecdao.findByPK(eventCRFId);
StudyEventDAO sedao = new StudyEventDAO(dataSource);
StudyEventBean studyEvent = (StudyEventBean) sedao.findByPK(eventCRFBean.getStudyEventId());
EventDefinitionCRFDAO eventDefinitionCRFDAO = new EventDefinitionCRFDAO(dataSource);
StudyDAO sdao = new StudyDAO(dataSource);
StudyBean study = sdao.findByStudySubjectId(eventCRFBean.getStudySubjectId());
eventDefBean =
eventDefinitionCRFDAO.findByStudyEventIdAndCRFVersionId(
study, studyEvent.getId(), this.crfVersionId);
}
eventDefBean = eventDefBean == null ? new EventDefinitionCRFBean() : eventDefBean;
// Create an array or List of DisplaySectionBeans representing each
// section
// for printing
DisplaySectionBean displaySectionBean;
for (SectionBean sectionBean : allCrfSections) {
displaySectionBean =
formBeanUtil.createDisplaySectionBWithFormGroups(
sectionBean.getId(),
this.crfVersionId,
dataSource,
eventDefBean.getId(),
eventCRFBean,
context);
displaySectionBeans.add(displaySectionBean);
}
}
return displaySectionBeans;
}
// note that this step sets us up both for
// displaying the data on the form again, in the event of an error
// and sending the data to the database, in the event of no error
//
// we have to do this after adding the validations, so that we don't
// overwrite the value the item data bean had from initial data entry
// before the validator stores it as part of the Matches Initial Data Entry
// Value validation
// dib = loadFormValue(dib);
// return dib;
// }
// should be from the db, we check here for a difference
@Override
protected List<DisplayItemGroupBean> validateDisplayItemGroupBean(
DiscrepancyValidator v,
DisplayItemGroupBean digb,
List<DisplayItemGroupBean> digbs,
List<DisplayItemGroupBean> formGroups,
HttpServletRequest request,
HttpServletResponse response) {
EventDefinitionCRFBean edcb = (EventDefinitionCRFBean) request.getAttribute(EVENT_DEF_CRF_BEAN);
HttpSession session = request.getSession();
logger.info("===got this far");
EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
int keyId = ecb.getId();
Integer validationCount = (Integer) session.getAttribute(COUNT_VALIDATE + keyId);
formGroups = loadFormValueForItemGroup(digb, digbs, formGroups, edcb.getId(), request);
logger.info(
"found formgroups size for "
+ digb.getGroupMetaBean().getName()
+ ": "
+ formGroups.size()
+ " compare to db groups size: "
+ digbs.size());
String inputName = "";
for (int i = 0; i < formGroups.size(); i++) {
DisplayItemGroupBean displayGroup = formGroups.get(i);
List<DisplayItemBean> items = displayGroup.getItems();
int order = displayGroup.getOrdinal();
if (displayGroup.isAuto() && displayGroup.getFormInputOrdinal() > 0) {
order = displayGroup.getFormInputOrdinal();
}
for (DisplayItemBean displayItem : items) {
if (displayGroup.isAuto()) {
inputName = getGroupItemInputName(displayGroup, order, displayItem);
} else {
inputName = getGroupItemManualInputName(displayGroup, order, displayItem);
}
validateDisplayItemBean(v, displayItem, inputName, request);
}
if (validationCount == null || validationCount.intValue() == 0) {
if (i == 0 && formGroups.size() != digbs.size()) {
v.addValidation(inputName + "group", Validator.DIFFERENT_NUMBER_OF_GROUPS_IN_DDE);
// TODO internationalize this string, tbh
v.setErrorMessage(
"There are additional values here that were not present in the initial data entry. You have entered a different number of groups"
+ " for the item groups containing "
+ inputName);
}
}
}
return formGroups;
}
@Override
protected List<DisplayItemGroupBean> validateDisplayItemGroupBean(
DiscrepancyValidator v,
DisplayItemGroupBean digb,
List<DisplayItemGroupBean> digbs,
List<DisplayItemGroupBean> formGroups,
RuleValidator rv,
HashMap<String, ArrayList<String>> groupOrdinalPLusItemOid,
HttpServletRequest request,
HttpServletResponse response) {
EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
EventDefinitionCRFBean edcb = (EventDefinitionCRFBean) request.getAttribute(EVENT_DEF_CRF_BEAN);
// logger.info("===got this far");
int keyId = ecb.getId();
Integer validationCount = (Integer) request.getSession().getAttribute(COUNT_VALIDATE + keyId);
formGroups = loadFormValueForItemGroup(digb, digbs, formGroups, edcb.getId(), request);
logger.info(
"found formgroups size for "
+ digb.getGroupMetaBean().getName()
+ ": "
+ formGroups.size()
+ " compare to db groups size: "
+ digbs.size());
String inputName = "";
for (int i = 0; i < formGroups.size(); i++) {
DisplayItemGroupBean displayGroup = formGroups.get(i);
List<DisplayItemBean> items = displayGroup.getItems();
int order = displayGroup.getOrdinal();
if (displayGroup.isAuto() && displayGroup.getFormInputOrdinal() > 0) {
order = displayGroup.getFormInputOrdinal();
}
for (DisplayItemBean displayItem : items) {
if (displayGroup.isAuto()) {
inputName = getGroupItemInputName(displayGroup, order, displayItem);
} else {
inputName = getGroupItemManualInputName(displayGroup, order, displayItem);
}
if (displayItem.getMetadata().isShowItem()
|| getItemMetadataService()
.isShown(displayItem.getItem().getId(), ecb, displayItem.getData())) {
// add the validation
if (groupOrdinalPLusItemOid.containsKey(displayItem.getItem().getOid())
|| groupOrdinalPLusItemOid.containsKey(
String.valueOf(order + 1) + displayItem.getItem().getOid())) {
System.out.println(
"IN : " + String.valueOf(order + 1) + displayItem.getItem().getOid());
validateDisplayItemBean(
v,
displayItem,
inputName,
rv,
groupOrdinalPLusItemOid,
true,
groupOrdinalPLusItemOid.get(
String.valueOf(order + 1) + displayItem.getItem().getOid()),
request);
} else {
validateDisplayItemBean(
v, displayItem, inputName, rv, groupOrdinalPLusItemOid, false, null, request);
}
} else {
System.out.println("OUT : " + String.valueOf(order + 1) + displayItem.getItem().getOid());
}
// validateDisplayItemBean(v, displayItem, inputName);
}
}
return formGroups;
}
private ArrayList<StudyEventDefinitionBean> createSiteEventDefinitions(StudyBean site) {
FormProcessor fp = new FormProcessor(request);
ArrayList<StudyEventDefinitionBean> seds = new ArrayList<StudyEventDefinitionBean>();
StudyBean parentStudy =
(StudyBean) new StudyDAO(sm.getDataSource()).findByPK(site.getParentStudyId());
seds = (ArrayList<StudyEventDefinitionBean>) session.getAttribute("definitions");
if (seds == null || seds.size() <= 0) {
StudyEventDefinitionDAO sedDao = new StudyEventDefinitionDAO(sm.getDataSource());
seds = sedDao.findAllByStudy(parentStudy);
}
CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
HashMap<String, Boolean> changes = new HashMap<String, Boolean>();
for (StudyEventDefinitionBean sed : seds) {
EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
ArrayList<EventDefinitionCRFBean> edcs = sed.getCrfs();
int start = 0;
for (EventDefinitionCRFBean edcBean : edcs) {
int edcStatusId = edcBean.getStatus().getId();
if (edcStatusId == 5 || edcStatusId == 7) {
} else {
String order = start + "-" + edcBean.getId();
int defaultVersionId = fp.getInt("defaultVersionId" + order);
String requiredCRF = fp.getString("requiredCRF" + order);
String doubleEntry = fp.getString("doubleEntry" + order);
String electronicSignature = fp.getString("electronicSignature" + order);
String hideCRF = fp.getString("hideCRF" + order);
int sdvId = fp.getInt("sdvOption" + order);
ArrayList<String> selectedVersionIdList = fp.getStringArray("versionSelection" + order);
int selectedVersionIdListSize = selectedVersionIdList.size();
String selectedVersionIds = "";
if (selectedVersionIdListSize > 0) {
for (String id : selectedVersionIdList) {
selectedVersionIds += id + ",";
}
selectedVersionIds = selectedVersionIds.substring(0, selectedVersionIds.length() - 1);
}
boolean changed = false;
boolean isRequired =
!StringUtil.isBlank(requiredCRF) && "yes".equalsIgnoreCase(requiredCRF.trim())
? true
: false;
boolean isDouble =
!StringUtil.isBlank(doubleEntry) && "yes".equalsIgnoreCase(doubleEntry.trim())
? true
: false;
boolean hasPassword =
!StringUtil.isBlank(electronicSignature)
&& "yes".equalsIgnoreCase(electronicSignature.trim())
? true
: false;
boolean isHide =
!StringUtil.isBlank(hideCRF) && "yes".equalsIgnoreCase(hideCRF.trim()) ? true : false;
if (edcBean.getParentId() > 0) {
int dbDefaultVersionId = edcBean.getDefaultVersionId();
if (defaultVersionId != dbDefaultVersionId) {
changed = true;
CRFVersionBean defaultVersion = (CRFVersionBean) cvdao.findByPK(defaultVersionId);
edcBean.setDefaultVersionId(defaultVersionId);
edcBean.setDefaultVersionName(defaultVersion.getName());
}
if (isRequired != edcBean.isRequiredCRF()) {
changed = true;
edcBean.setRequiredCRF(isRequired);
}
if (isDouble != edcBean.isDoubleEntry()) {
changed = true;
edcBean.setDoubleEntry(isDouble);
}
if (hasPassword != edcBean.isElectronicSignature()) {
changed = true;
edcBean.setElectronicSignature(hasPassword);
}
if (isHide != edcBean.isHideCrf()) {
changed = true;
edcBean.setHideCrf(isHide);
}
if (!StringUtil.isBlank(selectedVersionIds)
&& !selectedVersionIds.equals(edcBean.getSelectedVersionIds())) {
changed = true;
String[] ids = selectedVersionIds.split(",");
ArrayList<Integer> idList = new ArrayList<Integer>();
for (String id : ids) {
idList.add(Integer.valueOf(id));
}
edcBean.setSelectedVersionIdList(idList);
edcBean.setSelectedVersionIds(selectedVersionIds);
}
if (sdvId > 0 && sdvId != edcBean.getSourceDataVerification().getCode()) {
changed = true;
edcBean.setSourceDataVerification(SourceDataVerification.getByCode(sdvId));
}
} else {
// only if definition-crf has been modified, will it be
// saved for the site
int defaultId = defaultVersionId > 0 ? defaultVersionId : edcBean.getDefaultVersionId();
if (defaultId == defaultVersionId) {
if (isRequired == edcBean.isRequiredCRF()) {
if (isDouble == edcBean.isDoubleEntry()) {
if (hasPassword == edcBean.isElectronicSignature()) {
if (isHide == edcBean.isHideCrf()) {
if (selectedVersionIdListSize > 0) {
if (selectedVersionIdListSize == edcBean.getVersions().size()) {
if (sdvId > 0) {
if (sdvId != edcBean.getSourceDataVerification().getCode()) {
changed = true;
edcBean.setSourceDataVerification(
SourceDataVerification.getByCode(sdvId));
}
}
} else {
changed = true;
String[] ids = selectedVersionIds.split(",");
ArrayList<Integer> idList = new ArrayList<Integer>();
for (String id : ids) {
idList.add(Integer.valueOf(id));
}
edcBean.setSelectedVersionIdList(idList);
edcBean.setSelectedVersionIds(selectedVersionIds);
}
}
} else {
changed = true;
edcBean.setHideCrf(isHide);
}
} else {
changed = true;
edcBean.setElectronicSignature(hasPassword);
}
} else {
changed = true;
edcBean.setDoubleEntry(isDouble);
}
} else {
changed = true;
edcBean.setRequiredCRF(isRequired);
}
} else {
changed = true;
CRFVersionBean defaultVersion = (CRFVersionBean) cvdao.findByPK(defaultVersionId);
edcBean.setDefaultVersionId(defaultVersionId);
edcBean.setDefaultVersionName(defaultVersion.getName());
}
}
changes.put(sed.getId() + "-" + edcBean.getId(), changed);
++start;
}
}
}
session.setAttribute("changed", changes);
return seds;
}