public Object pixelData(PixelDataJob pdj) throws Throwable { if (!reader.isMinMaxSet() && !noStatsInfo) { // Parse the binary data to generate min/max values int seriesCount = reader.getSeriesCount(); for (int series = 0; series < seriesCount; series++) { ImportSize size = new ImportSize(fileName, pixList.get(series), reader.getDimensionOrder()); Pixels pixels = pixList.get(series); MessageDigest md = parseData(fileName, series, size); if (md != null) { final String s = Hex.encodeHexString(md.digest()); pixels.setSha1(store.toRType(s)); } } } // As we're in metadata-only mode on we need to // tell the server which Image matches which series. int series = 0; for (final Pixels pixels : pixList) { store.setPixelsFile(pixels.getId().getValue(), fileName, repoUuid); pixels.getImage().setSeries(store.toRType(series++)); } for (final Image image : imageList) { image.unloadAnnotationLinks(); } store.updatePixels(pixList); if (!reader.isMinMaxSet() && !noStatsInfo) { store.populateMinMax(); } return null; }