/** * This method performs the actual changes. * * @param panel * @param pr * @param fileDir The path to the file directory to set, or null if it should not be set. */ private void makeChanges( BasePanel panel, ParserResult pr, boolean upgradePrefs, boolean upgradeDatabase, String fileDir) { if (upgradeDatabase) { // Update file links links in the database: NamedCompound ce = Util.upgradePdfPsToFile(pr.getDatabase(), FileLinksUpgradeWarning.FIELDS_TO_LOOK_FOR); panel.undoManager.addEdit(ce); panel.markBaseChanged(); } if (fileDir != null) { Globals.prefs.put(GUIGlobals.FILE_FIELD + "Directory", fileDir); } if (upgradePrefs) { // Exchange table columns: Globals.prefs.putBoolean(JabRefPreferences.PDF_COLUMN, Boolean.FALSE); Globals.prefs.putBoolean(JabRefPreferences.FILE_COLUMN, Boolean.TRUE); // Modify General fields if necessary: // If we don't find the file field, insert it at the bottom of the first tab: if (!showsFileInGenFields()) { String gfs = Globals.prefs.get(JabRefPreferences.CUSTOM_TAB_FIELDS + "0"); // System.out.println(gfs); StringBuilder sb = new StringBuilder(gfs); if (gfs.length() > 0) { sb.append(";"); } sb.append(GUIGlobals.FILE_FIELD); Globals.prefs.put(JabRefPreferences.CUSTOM_TAB_FIELDS + "0", sb.toString()); Globals.prefs.updateEntryEditorTabList(); panel.frame().removeCachedEntryEditors(); } panel.frame().setupAllTables(); } }
@Override public void run() { if (cancelled) { return; } int choice = showCleanUpDialog(); if (choice != JOptionPane.OK_OPTION) { cancelled = true; return; } storeSettings(); boolean choiceCleanUpSuperscripts = cleanUpSuperscripts.isSelected(); boolean choiceCleanUpDOI = cleanUpDOI.isSelected(); boolean choiceCleanUpMonth = cleanUpMonth.isSelected(); boolean choiceCleanUpPageNumbers = cleanUpPageNumbers.isSelected(); boolean choiceCleanUpDate = cleanUpDate.isSelected(); boolean choiceCleanUpUpgradeExternalLinks = cleanUpUpgradeExternalLinks.isSelected(); boolean choiceMakePathsRelative = cleanUpMakePathsRelative.isSelected(); boolean choiceRenamePDF = cleanUpRenamePDF.isSelected(); boolean choiceConvertHTML = cleanUpHTML.isSelected(); boolean choiceConvertCase = cleanUpCase.isSelected(); boolean choiceConvertLaTeX = cleanUpLaTeX.isSelected(); boolean choiceConvertUnits = cleanUpUnits.isSelected(); boolean choiceConvertUnicode = cleanUpUnicode.isSelected(); boolean choiceConvertToBiblatex = cleanUpBibLatex.isSelected(); if (choiceRenamePDF && Globals.prefs.getBoolean(CleanUpAction.AKS_AUTO_NAMING_PDFS_AGAIN)) { CheckBoxMessage cbm = new CheckBoxMessage( Localization.lang("Auto-generating PDF-Names does not support undo. Continue?"), Localization.lang("Disable this confirmation dialog"), false); int answer = JOptionPane.showConfirmDialog( frame, cbm, Localization.lang("Autogenerate PDF Names"), JOptionPane.YES_NO_OPTION); if (cbm.isSelected()) { Globals.prefs.putBoolean(CleanUpAction.AKS_AUTO_NAMING_PDFS_AGAIN, false); } if (answer == JOptionPane.NO_OPTION) { cancelled = true; return; } } // first upgrade the external links // we have to use it separately as the Utils function generates a separate Named Compound if (choiceCleanUpUpgradeExternalLinks) { NamedCompound ce = Util.upgradePdfPsToFile( Arrays.asList(panel.getSelectedEntries()), new String[] {"pdf", "ps"}); if (ce.hasEdits()) { panel.undoManager.addEdit(ce); panel.markBaseChanged(); panel.updateEntryEditorIfShowing(); panel.output(Localization.lang("Upgraded links.")); } } for (BibtexEntry entry : panel.getSelectedEntries()) { // undo granularity is on entry level NamedCompound ce = new NamedCompound(Localization.lang("Cleanup entry")); if (choiceCleanUpSuperscripts) { doCleanUpSuperscripts(entry, ce); } if (choiceCleanUpDOI) { doCleanUpDOI(entry, ce); } if (choiceCleanUpMonth) { doCleanUpMonth(entry, ce); } if (choiceCleanUpPageNumbers) { doCleanUpPageNumbers(entry, ce); } if (choiceCleanUpDate) { doCleanUpDate(entry, ce); } fixWrongFileEntries(entry, ce); if (choiceMakePathsRelative) { doMakePathsRelative(entry, ce); } if (choiceRenamePDF) { doRenamePDFs(entry, ce); } if (choiceConvertHTML) { doConvertHTML(entry, ce); } if (choiceConvertUnits) { doConvertUnits(entry, ce); } if (choiceConvertCase) { doConvertCase(entry, ce); } if (choiceConvertLaTeX) { doConvertLaTeX(entry, ce); } if (choiceConvertUnicode) { doConvertUnicode(entry, ce); } if (choiceConvertToBiblatex) { convertToBiblatex(entry, ce); } ce.end(); if (ce.hasEdits()) { modifiedEntriesCount++; panel.undoManager.addEdit(ce); } } }