@Test
public void testGetPrefferedImplByDescriptorID() {
IEclipsePreferences prefs = new DefaultScope().getNode(Activator.PLUGIN_ID);
assertNotNull(prefs);
String prefsString = prefs.get(QSARConstants.QSAR_PROVIDERS_ORDER_PREFERENCE, null);
assertNotNull(prefsString);
System.out.println("Got prefs string: " + prefsString);
DescriptorImpl impl = qsar.getPreferredImpl(chiChainID);
assertNotNull(impl);
System.out.println("pref impl: " + impl.getId());
// assertEquals("net.bioclipse.qsar.test.descriptor2", impl.getId());
System.out.println("wee");
}
@Test
public void testGetDescriptorImplNotInOntology() {
System.out.println("=.=.=.=.=.=.=.=.=.=.=.=.=.=.=.=.");
System.out.println("Impl not in onology:");
System.out.println("=.=.=.=.=.=.=.=.=.=.=.=.=.=.=.=.");
boolean toFail = false;
for (DescriptorImpl impl : qsar.getFullDescriptorImpls()) {
if (qsar.getDescriptorIDs().contains(impl.getDefinition())) {
// All is well
} else {
System.out.println(
"=.= Descriptor impl: " + impl.getName() + " with def: " + impl.getDefinition());
toFail = true;
}
}
System.out.println("=.=.=.=.=.=.=.=.=.=.=.=.=.=.=.=.");
assertFalse("Not all CDK impl are present in ontology, see list on stdout", toFail);
}
@Test
public void testGetDescriptors() throws BioclipseException {
// Matches plugin.xml, just test some classes
// Get provider by ID
DescriptorProvider provider = qsar.getProviderByID(cdkRestProviderID);
assertNotNull(provider);
List<String> descImplIDs = qsar.getDescriptorImplsByProvider(cdkRestProviderID);
List<DescriptorImpl> descs = qsar.getFullDescriptorImpls(provider);
// Check list of IDs and list of classes equal size
assertEquals(descImplIDs.size(), descs.size());
List<String> descIDs = new ArrayList<String>();
for (DescriptorImpl impl : descs) {
descIDs.add(impl.getDefinition());
}
assertTrue(descIDs.contains(xlogpID));
assertTrue(descIDs.contains(bpolID));
}
@Test
public void testGetDescriptorsByID() throws BioclipseException {
// Get decriptor by hardcoded id
DescriptorImpl desc = qsar.getDescriptorImpl(bpolID, cdkRestProviderID);
assertNotNull(desc);
assertNull(desc.getParameters());
assertFalse(desc.isRequires3D());
assertEquals(cdkRestProviderID, desc.getProvider().getId());
assertNotNull(desc.getDescription());
assertNotNull(desc.getDefinition());
}