public void applyAction(ActionEvent evt) {
if (FormatProperties.contains(getArg("format"))) {
fireStatusEvent("Formatting...");
String outStr =
FormatAdapter.get(getArg("format").toUpperCase(), av.getAlignment().getSequences());
ta.setText(outStr);
fireStatusEvent("done");
} else {
fireStatusEvent("Not yet supported", StatusEvent.ERROR);
}
}
public OutputPopup(JFrame parent, AlignViewport av, Controller c, String title) {
super(parent, av, c, title);
sp = new JScrollPane();
ta = new JTextArea(10, 60);
f = new JComboBox();
ta.setFont(new Font("Courier", Font.PLAIN, 10));
format = new JLabel("Alignment format");
for (int i = 0; i < FormatProperties.getFormats().size(); i++) {
f.addItem((String) FormatProperties.getFormats().elementAt(i));
}
sp.add(ta);
gbc.fill = GridBagConstraints.BOTH;
gbc.weighty = 1.0;
add(sp, gb, gbc, 0, 0, 2, 2);
gbc.fill = GridBagConstraints.HORIZONTAL;
add(format, gb, gbc, 0, 2, 1, 1);
add(f, gb, gbc, 1, 2, 1, 1);
add(status, gb, gbc, 0, 3, 2, 2);
setApplyAction(new AreaOutputAction("area output", av, c));
pack();
Dimension screenSize = Toolkit.getDefaultToolkit().getScreenSize();
setLocation(
(screenSize.width - getSize().width) / 2, (screenSize.height - getSize().height) / 2);
show();
}
public void applyAction(ActionEvent evt) {
String fileStr = getArg("file");
System.out.println("Output string " + fileStr);
if (FormatProperties.contains(getArg("format"))) {
if (parent instanceof AlignFrame) {
AlignFrame af = (AlignFrame) parent;
String outStr =
FormatAdapter.get(getArg("format").toUpperCase(), av.getAlignment().getSequences());
System.out.println(outStr + " " + fileStr);
try {
PrintStream ps =
new PrintStream(new BufferedOutputStream(new FileOutputStream(fileStr)));
fireStatusEvent("Saving file");
try {
Thread.sleep(500);
} catch (Exception ex2) {
}
ps.print(outStr);
ps.close();
fireStatusEvent("done");
fireJalActionEvent(new JalActionEvent(this, this, JalActionEvent.DONE));
} catch (IOException ex) {
fireStatusEvent("Can't open file", StatusEvent.ERROR);
System.out.println("Exception : " + ex);
}
} else {
fireStatusEvent("(Internal Error) Parent isn't Alignment Frame", StatusEvent.ERROR);
}
} else {
fireStatusEvent("Format not yet supported", StatusEvent.ERROR);
}
}