public void actionPerformed(ActionEvent e) { if (e.getActionCommand().equals("No coloring")) { ((TreeWindow) parent).removeColor(); } else if (e.getActionCommand().equals("Majority coloring")) { ((TreeWindow) parent).tree.setMajorityColoring(majorityColoringMenuItem.isSelected()); ((TreeWindow) parent).tree.getTree().updateBranchColorFromChildren(); // frame.recolorBranches(); } else if (e.getActionCommand().equals("Number of OTUs")) { tree.getTree().sortByNumberOfOtus(); tree.setYOffsets(tree.getTree(), 0); tree.setTOffsets(tree.getTree(), 0); tree.setROffsets(tree.getTree(), 0); tree.setRadialOffsets(tree.getTree()); } else if (e.getActionCommand().equals("Number of immediate children")) { tree.getTree().sortByNumberOfChildren(); tree.setYOffsets(tree.getTree(), 0); tree.setTOffsets(tree.getTree(), 0); tree.setROffsets(tree.getTree(), 0); tree.setRadialOffsets(tree.getTree()); } }