public Param getColunitProtein(ProteinTableField column) throws MzTabParsingException {
if (column == ProteinTableField.PROTEIN_ABUNDANCE
|| column == ProteinTableField.PROTEIN_ABUNDANCE_STD
|| column == ProteinTableField.PROTEIN_ABUNDANCE_STD_ERROR) {
throw new MzTabParsingException(
"The colunit field cannot be used to store units for abundance columns. Please use getProteinQuantificationUnit");
}
if (column == ProteinTableField.CUSTOM) {
throw new MzTabParsingException(
"This function cannot be used to retrieve units for optional columns");
}
return getColunitProtein(column.toString());
}
/**
* Sets the unit for the specified column.
*
* @param column
* @param unit
* @throws MzTabParsingException Thrown if the unit is set for a column that is not supported.
*/
public void setColunitProtein(ProteinTableField column, Param unit) throws MzTabParsingException {
if (column == ProteinTableField.PROTEIN_ABUNDANCE
|| column == ProteinTableField.PROTEIN_ABUNDANCE_STD
|| column == ProteinTableField.PROTEIN_ABUNDANCE_STD_ERROR) {
throw new MzTabParsingException("Colunits must not be set for abundance columns.");
}
if (column == ProteinTableField.CUSTOM) {
throw new MzTabParsingException("This function cannot be used to set custom column units");
}
if (column == ProteinTableField.HEADER_PREFIX || column == ProteinTableField.ROW_PREFIX) {
throw new MzTabParsingException("ROW_PREFIX and HEADER_PREFIX are not valid columns.");
}
setColunitProtein(column.toString(), unit);
}
