private static Category parseCategory(Node n) {
NamedNodeMap atts = n.getAttributes();
String name = atts.getNamedItem("name").getNodeValue();
String desc = atts.getNamedItem("description").getNodeValue();
Category cat = new Category(name, desc);
NodeList children = n.getChildNodes();
for (int i = 0; i < children.getLength(); i++) {
parseNode(children.item(i), cat);
}
return cat;
}
/**
* Retrieves default values from xml.
*
* @param list the configuration list
*/
private static void parseDefaults(NodeList list) {
for (int i = 0; i < list.getLength(); ++i) {
NamedNodeMap mapping = list.item(i).getAttributes();
String attribute = mapping.getNamedItem("attribute").getNodeValue();
String value = mapping.getNamedItem("value").getNodeValue();
try {
Default field = Default.fromString(attribute);
DEFAULTS.put(field, value);
} catch (IllegalArgumentException exc) {
logger.warn("Unrecognized default attribute: " + attribute);
}
}
}
/**
* Populates LOCALES list with contents of xml.
*
* @param list the configuration list
*/
private static void parseLocales(NodeList list) {
for (int i = 0; i < list.getLength(); ++i) {
Node node = list.item(i);
NamedNodeMap attributes = node.getAttributes();
String label = ((Attr) attributes.getNamedItem("label")).getValue();
String code = ((Attr) attributes.getNamedItem("isoCode")).getValue();
String dictLocation = ((Attr) attributes.getNamedItem("dictionaryUrl")).getValue();
try {
LOCALES.add(new Locale(label, code, new URL(dictLocation)));
} catch (MalformedURLException exc) {
logger.warn(
"Unable to parse dictionary location of " + label + " (" + dictLocation + ")", exc);
}
}
}
private static Command parseCommand(Node n) {
NamedNodeMap atts = n.getAttributes();
String name = atts.getNamedItem("name").getNodeValue();
String desc = atts.getNamedItem("description").getNodeValue();
String command = atts.getNamedItem("command").getNodeValue();
Command com = new Command(name, desc, command);
NodeList children = n.getChildNodes();
for (int i = 0; i < children.getLength(); i++) {
Node child = children.item(i);
if (!child.getNodeName().equals("Argument")) continue;
NamedNodeMap childAtts = child.getAttributes();
String childName = childAtts.getNamedItem("name").getNodeValue();
String childDesc = childAtts.getNamedItem("description").getNodeValue();
String childVal = "";
if (childAtts.getNamedItem("default") != null)
childVal = childAtts.getNamedItem("default").getNodeValue();
Argument arg = new Argument(childName, childDesc, childVal);
com.addArgument(arg);
}
return com;
}
/** Возвращает имя метода. */
public String getName() {
/** Получаем атрибуты узла метода. */
NamedNodeMap attributes = node.getAttributes();
/** Получаем узел аттрибута. */
Node nameAttrib = attributes.getNamedItem("name");
/** Возвращаем значение атрибута. */
return nameAttrib.getNodeValue();
}
private static void parseXML() {
try {
Document doc =
DocumentBuilderFactory.newInstance()
.newDocumentBuilder()
.parse(CommandBuilder.class.getResourceAsStream("/CommandMap.xml"));
NodeList nodes = doc.getElementsByTagName("CommandMap");
for (int i = 0; i < nodes.getLength(); i++) {
Node n = nodes.item(i);
NamedNodeMap atts = n.getAttributes();
String rootCommand = atts.getNamedItem("rootCommand").getNodeValue();
rootNode = new Category(rootCommand, "");
NodeList children = n.getChildNodes();
for (int p = 0; p < children.getLength(); p++) {
parseNode(children.item(p), rootNode);
}
}
} catch (Exception e) {
e.printStackTrace();
}
}
private static String xgetAt(NamedNodeMap namedNodeMap, String elementName) {
Attr a = (Attr) namedNodeMap.getNamedItem(elementName);
return a.getValue();
}
/**
* @param list
* @param parent
* @exception NumberFormatException
* @exception DicomException
*/
void addAttributesFromNodeToList(AttributeList list, Node parent)
throws NumberFormatException, DicomException {
if (parent != null) {
Node node = parent.getFirstChild();
while (node != null) {
String elementName = node.getNodeName();
NamedNodeMap attributes = node.getAttributes();
if (attributes != null) {
Node vrNode = attributes.getNamedItem("vr");
Node groupNode = attributes.getNamedItem("group");
Node elementNode = attributes.getNamedItem("element");
if (vrNode != null && groupNode != null && elementNode != null) {
String vrString = vrNode.getNodeValue();
String groupString = groupNode.getNodeValue();
String elementString = elementNode.getNodeValue();
if (vrString != null && groupString != null && elementString != null) {
byte[] vr = vrString.getBytes();
int group = Integer.parseInt(groupString, 16);
int element = Integer.parseInt(elementString, 16);
AttributeTag tag = new AttributeTag(group, element);
if ((group % 2 == 0 && element == 0)
|| (group == 0x0008 && element == 0x0001)
|| (group == 0xfffc && element == 0xfffc)) {
// System.err.println("ignoring group length or length to end or dataset trailing
// padding "+tag);
} else {
if (vrString.equals("SQ")) {
SequenceAttribute a = new SequenceAttribute(tag);
// System.err.println("Created "+a);
if (node.hasChildNodes()) {
Node childNode = node.getFirstChild();
while (childNode != null) {
String childNodeName = childNode.getNodeName();
// System.err.println("childNodeName = "+childNodeName);
if (childNodeName != null && childNodeName.equals("Item")) {
// should check item number, but ignore for now :(
// System.err.println("Adding item to sequence");
AttributeList itemList = new AttributeList();
addAttributesFromNodeToList(itemList, childNode);
a.addItem(itemList);
}
// else may be a #text element in between
childNode = childNode.getNextSibling();
}
}
// System.err.println("Sequence Attribute is "+a);
list.put(tag, a);
} else {
Attribute a = AttributeFactory.newAttribute(tag, vr);
// System.err.println("Created "+a);
if (node.hasChildNodes()) {
Node childNode = node.getFirstChild();
while (childNode != null) {
String childNodeName = childNode.getNodeName();
// System.err.println("childNodeName = "+childNodeName);
if (childNodeName != null && childNodeName.equals("value")) {
// should check value number, but ignore for now :(
String value = childNode.getTextContent();
// System.err.println("Value value = "+value);
if (value != null) {
value =
StringUtilities.removeLeadingOrTrailingWhitespaceOrISOControl(
value); // just in case
a.addValue(value);
}
}
// else may be a #text element in between
childNode = childNode.getNextSibling();
}
}
// System.err.println("Attribute is "+a);
list.put(tag, a);
}
}
}
}
}
node = node.getNextSibling();
}
}
}
/** updates the XMl with hashcode for the files */
protected BudgetSubAwards updateXML(
byte xmlContents[], Map fileMap, BudgetSubAwards budgetSubAwardBean, Budget budget)
throws Exception {
javax.xml.parsers.DocumentBuilderFactory domParserFactory =
javax.xml.parsers.DocumentBuilderFactory.newInstance();
javax.xml.parsers.DocumentBuilder domParser = domParserFactory.newDocumentBuilder();
ByteArrayInputStream byteArrayInputStream = new ByteArrayInputStream(xmlContents);
org.w3c.dom.Document document = domParser.parse(byteArrayInputStream);
byteArrayInputStream.close();
String namespace = null;
String formName = null;
if (document != null) {
Node node;
Element element = document.getDocumentElement();
NamedNodeMap map = element.getAttributes();
String namespaceHolder =
element.getNodeName().substring(0, element.getNodeName().indexOf(':'));
node = map.getNamedItem("xmlns:" + namespaceHolder);
namespace = node.getNodeValue();
FormMappingInfo formMappingInfo = new FormMappingLoader().getFormInfo(namespace);
formName = formMappingInfo.getFormName();
budgetSubAwardBean.setNamespace(namespace);
budgetSubAwardBean.setFormName(formName);
}
String xpathEmptyNodes =
"//*[not(node()) and local-name(.) != 'FileLocation' and local-name(.) != 'HashValue']";
String xpathOtherPers =
"//*[local-name(.)='ProjectRole' and local-name(../../.)='OtherPersonnel' and count(../NumberOfPersonnel)=0]";
removeAllEmptyNodes(document, xpathEmptyNodes, 0);
removeAllEmptyNodes(document, xpathOtherPers, 1);
removeAllEmptyNodes(document, xpathEmptyNodes, 0);
changeDataTypeForNumberOfOtherPersons(document);
List<String> fedNonFedSubAwardForms = getFedNonFedSubawardForms();
NodeList budgetYearList =
XPathAPI.selectNodeList(document, "//*[local-name(.) = 'BudgetYear']");
for (int i = 0; i < budgetYearList.getLength(); i++) {
Node bgtYearNode = budgetYearList.item(i);
String period = getValue(XPathAPI.selectSingleNode(bgtYearNode, "BudgetPeriod"));
if (fedNonFedSubAwardForms.contains(namespace)) {
Element newBudgetYearElement =
copyElementToName((Element) bgtYearNode, bgtYearNode.getNodeName());
bgtYearNode.getParentNode().replaceChild(newBudgetYearElement, bgtYearNode);
} else {
Element newBudgetYearElement =
copyElementToName((Element) bgtYearNode, bgtYearNode.getNodeName() + period);
bgtYearNode.getParentNode().replaceChild(newBudgetYearElement, bgtYearNode);
}
}
Node oldroot = document.removeChild(document.getDocumentElement());
Node newroot = document.appendChild(document.createElement("Forms"));
newroot.appendChild(oldroot);
org.w3c.dom.NodeList lstFileName = document.getElementsByTagName("att:FileName");
org.w3c.dom.NodeList lstFileLocation = document.getElementsByTagName("att:FileLocation");
org.w3c.dom.NodeList lstMimeType = document.getElementsByTagName("att:MimeType");
org.w3c.dom.NodeList lstHashValue = document.getElementsByTagName("glob:HashValue");
if ((lstFileName.getLength() != lstFileLocation.getLength())
|| (lstFileLocation.getLength() != lstHashValue.getLength())) {
// throw new RuntimeException("Tag occurances mismatch in XML File");
}
org.w3c.dom.Node fileNode, hashNode, mimeTypeNode;
org.w3c.dom.NamedNodeMap fileNodeMap, hashNodeMap;
String fileName;
byte fileBytes[];
String contentId;
List attachmentList = new ArrayList();
for (int index = 0; index < lstFileName.getLength(); index++) {
fileNode = lstFileName.item(index);
Node fileNameNode = fileNode.getFirstChild();
fileName = fileNameNode.getNodeValue();
fileBytes = (byte[]) fileMap.get(fileName);
if (fileBytes == null) {
throw new RuntimeException("FileName mismatch in XML and PDF extracted file");
}
String hashVal = GrantApplicationHash.computeAttachmentHash(fileBytes);
hashNode = lstHashValue.item(index);
hashNodeMap = hashNode.getAttributes();
Node temp = document.createTextNode(hashVal);
hashNode.appendChild(temp);
hashNode = hashNodeMap.getNamedItem("glob:hashAlgorithm");
hashNode.setNodeValue(S2SConstants.HASH_ALGORITHM);
fileNode = lstFileLocation.item(index);
fileNodeMap = fileNode.getAttributes();
fileNode = fileNodeMap.getNamedItem("att:href");
contentId = fileNode.getNodeValue();
String encodedContentId = cleanContentId(contentId);
fileNode.setNodeValue(encodedContentId);
mimeTypeNode = lstMimeType.item(0);
String contentType = mimeTypeNode.getFirstChild().getNodeValue();
BudgetSubAwardAttachment budgetSubAwardAttachmentBean = new BudgetSubAwardAttachment();
budgetSubAwardAttachmentBean.setAttachment(fileBytes);
budgetSubAwardAttachmentBean.setContentId(encodedContentId);
budgetSubAwardAttachmentBean.setContentType(contentType);
budgetSubAwardAttachmentBean.setBudgetId(budgetSubAwardBean.getBudgetId());
budgetSubAwardAttachmentBean.setSubAwardNumber(budgetSubAwardBean.getSubAwardNumber());
attachmentList.add(budgetSubAwardAttachmentBean);
}
budgetSubAwardBean.setBudgetSubAwardAttachments(attachmentList);
javax.xml.transform.Transformer transformer =
javax.xml.transform.TransformerFactory.newInstance().newTransformer();
transformer.setOutputProperty(javax.xml.transform.OutputKeys.INDENT, "yes");
ByteArrayOutputStream bos = new ByteArrayOutputStream();
javax.xml.transform.stream.StreamResult result =
new javax.xml.transform.stream.StreamResult(bos);
javax.xml.transform.dom.DOMSource source = new javax.xml.transform.dom.DOMSource(document);
transformer.transform(source, result);
budgetSubAwardBean.setSubAwardXmlFileData(new String(bos.toByteArray()));
bos.close();
return budgetSubAwardBean;
}
