private void writeLogEntry(PrintWriter out, LogEntry logEntry) {
if (logEntry.getEntriesCount() == 0) {
return;
}
String message = logEntry.getMessage().replace(QUOTE_CHARACTER, QUOTE_SPECIAL_CHARACTER);
message =
message.replace(ANGLE_OPENING_BRACKET_CHARACTER, ANGLE_OPENING_BRACKET_SPECIAL_CHARACTER);
message =
message.replace(ANGLE_CLOSING_BRACKET_CHARACTER, ANGLE_CLOSING_BRACKET_SPECIAL_CHARACTER);
out.println(
MessageFormat.format(
LOGENTRY_START_NODE,
new String[] {message, Integer.toString(logEntry.getRevision()), logEntry.getDate()}));
List<PathEntry> pathEntries = logEntry.getPathEntries();
for (PathEntry pathEntry : pathEntries) {
out.println(
MessageFormat.format(
PATH_NODE, new String[] {pathEntry.getAction(), pathEntry.getPath()}));
}
out.println(LOGENTRY_END_NODE);
}
/**
* ** Gets the Localized value for the specified key. The default String text is return if ** the
* specified key does not exist ** @param key The LocalStrings key ** @param dft The default
* String text to return if the LocalStrings key does not exist ** @param args An array of
* replacement fields ** @return The Localized String text
*/
public String getString(String key, String dft, Object args[]) {
String val = this.getString(key, dft);
if ((args != null) && (args.length > 0) && (val != null)) {
try {
MessageFormat mf = new MessageFormat(val);
mf.setLocale(this.locale);
StringBuffer sb = mf.format(args, new StringBuffer(), null);
return I18N.decodeNewLine(sb).toString();
} catch (Throwable th) {
Print.logInfo("Exception: " + key + " ==> " + val);
}
}
return I18N.decodeNewLine(val);
}
void open(java.lang.String name) {
final java.lang.String textString;
if (name == null || name.length() == 0) {
return;
}
java.io.File file = new java.io.File(name);
if (!file.exists()) {
java.lang.String message =
MessageFormat.format(
resources.getString("Err_file_no_exist"), new java.lang.String[] {file.getName()});
displayError(message);
return;
}
try {
java.io.FileInputStream stream = new java.io.FileInputStream(file.getPath());
try {
java.io.Reader in = new java.io.BufferedReader(new java.io.InputStreamReader(stream));
char[] readBuffer = new char[2048];
java.lang.StringBuffer buffer = new java.lang.StringBuffer((int) file.length());
int n;
while ((n = in.read(readBuffer)) > 0) {
buffer.append(readBuffer, 0, (-n));
}
textString = buffer.toString();
stream.close();
} catch (java.io.IOException e) {
java.lang.String message =
MessageFormat.format(
resources.getString("Err_file_io"), new java.lang.String[] {file.getName()});
displayError(message);
return;
}
} catch (java.io.FileNotFoundException e) {
java.lang.String message =
MessageFormat.format(
resources.getString("Err_not_found"), new java.lang.String[] {file.getName()});
displayError(message);
return;
}
org.eclipse.swt.widgets.Display display = text.getDisplay();
display.asyncExec(
new java.lang.Runnable() {
public void run() {
text.setText(textString);
}
});
lineStyler.parseBlockComments(textString);
}
private String formatString(
MLevel l, String srcClass, String srcMeth, String msg, Object[] params, Throwable t) {
boolean add_parens = (srcMeth != null && !srcMeth.endsWith(")"));
StringBuffer sb = new StringBuffer(256);
sb.append(l.getLineHeader());
sb.append(' ');
if (srcClass != null && srcMeth != null) {
sb.append('[');
sb.append(srcClass);
sb.append('.');
sb.append(srcMeth);
if (add_parens) sb.append("()");
sb.append(']');
} else if (srcClass != null) {
sb.append('[');
sb.append(srcClass);
sb.append(']');
} else if (srcMeth != null) {
sb.append('[');
sb.append(srcMeth);
if (add_parens) sb.append("()");
sb.append(']');
}
if (msg == null) {
if (params != null) {
sb.append("params: ");
for (int i = 0, len = params.length; i < len; ++i) {
if (i != 0) sb.append(", ");
sb.append(params[i]);
}
}
} else {
if (params == null) sb.append(msg);
else {
MessageFormat mfmt = new MessageFormat(msg);
sb.append(mfmt.format(params));
}
}
if (t != null) {
sb.append(SEP);
sb.append(ThrowableUtils.extractStackTrace(t));
}
return sb.toString();
}
public java.lang.String getResourceString(java.lang.String key, java.lang.Object[] args) {
try {
return MessageFormat.format(getResourceString(key), args);
} catch (java.util.MissingResourceException e) {
return key;
} catch (java.lang.NullPointerException e) {
return "!" + key + "!";
}
}
/**
* Return the specified localized text for a given locale and replace the parameters with an array
* of arguments.
*
* @since 0.2
* @param key the text key in the resource bundle
* @param locale the locale of the message
* @param arguments the array of arguments
*/
public static String getText(String key, Locale locale, Object... arguments) {
// localize the arguments
Object[] arguments2 = new Object[arguments.length];
for (int i = 0; i < arguments.length; i++) {
arguments2[i] = getLocalizedArgument(locale, arguments[i]);
}
return MessageFormat.format(getText(key, locale), arguments2);
}
/**
* Gets a string from the resource bundle and binds it with the given arguments. If the key is not
* found, return the key.
*/
static String getResourceString(String key, Object[] args) {
try {
return MessageFormat.format(getResourceString(key), args);
} catch (MissingResourceException e) {
return key;
} catch (NullPointerException e) {
return "!" + key + "!"; // $NON-NLS-1$ //$NON-NLS-2$
}
}
/**
* getLocalizedMessage is used to localize the messages being used in exceptions with arguments
* inserted appropriately.
*/
public static String getLocalizedMessage(Logger logger, String key, Object[] args) {
try {
ResourceBundle rb = logger.getResourceBundle();
String message = rb.getString(key);
return MessageFormat.format(message, args);
} catch (Exception ex) {
logger.log(Level.FINE, "JTS:Error while localizing the log message");
return key;
}
}
public static String format(String message, Object[] args) {
MessageFormat mf;
String msg;
try {
mf = (MessageFormat) _formats.get(message);
if (mf == null) {
try {
msg = _messages.getString(message);
} catch (MissingResourceException except) {
return message;
}
mf = new MessageFormat(msg);
_formats.put(message, mf);
}
return mf.format(args);
} catch (Exception except) {
return "An internal error occured while processing message " + message;
}
}
@Override
public void actionPerformed(ActionEvent e) {
if (fc == null) {
fc = new IDEFileChooser();
fc.setFileView(new IDEFileView());
fc.setAcceptAllFileFilterUsed(false);
fc.setFileSelectionMode(JFileChooser.FILES_ONLY);
fc.setMultiSelectionEnabled(false);
fc.setDialogTitle(
messagesBundle.getString("ImageViewerPanelSaveAction.Choose_filename_to_save_4"));
//$NON-NLS-1$
// prepare file filters
IIORegistry theRegistry = IIORegistry.getDefaultInstance();
Iterator it = theRegistry.getServiceProviders(ImageWriterSpi.class, false);
while (it.hasNext()) {
ImageWriterSpi writer = (ImageWriterSpi) it.next();
if ((imageType == BufferedImage.TYPE_INT_ARGB
|| imageType == BufferedImage.TYPE_INT_ARGB_PRE)
&& "JPEG".equals(writer.getFormatNames()[0].toUpperCase())) continue;
ImageWriterSpiFileFilter ff = new ImageWriterSpiFileFilter(writer);
fc.addChoosableFileFilter(ff);
}
}
if (fc.showSaveDialog(viewerPanel) == JFileChooser.APPROVE_OPTION) {
File selectedFile = fc.getSelectedFile();
if (selectedFile != null) {
String fileName = selectedFile.getAbsolutePath();
ImageWriterSpiFileFilter ff = (ImageWriterSpiFileFilter) fc.getFileFilter();
if (!ff.hasCorrectSuffix(fileName)) fileName = ff.addSuffix(fileName);
selectedFile = new File(fileName);
if (selectedFile.exists()) {
String message =
MessageFormat.format(
messagesBundle.getString("ImageViewerPanelSaveAction.Overwrite_question_5"),
//$NON-NLS-1$
fileName);
if (JOptionPane.NO_OPTION
== JOptionPane.showConfirmDialog(
viewerPanel,
message,
messagesBundle.getString("ImageViewerPanelSaveAction.Warning_6"),
//$NON-NLS-1$
JOptionPane.YES_NO_OPTION,
JOptionPane.WARNING_MESSAGE)) return;
}
writeToFile(selectedFile, ff);
}
}
}
private void writeSummary(PrintWriter out) {
out.println(SUMMARY_START_NODE);
out.println(
MessageFormat.format(
CHANGES_START_NODE, new String[] {Integer.toString(getLogEntriesCount())}));
List<String> authors = getAuthors();
for (String author : authors) {
out.println(
MessageFormat.format(
AUTHOR_SUMMARY_NODE,
new String[] {
author,
Integer.toString(getAuthorLogEntriesCount(author)),
Integer.toString(getAuthorLogEntriesPercent(author))
}));
}
out.println(CHANGES_END_NODE);
out.println(SUMMARY_END_NODE);
}
@Override
public synchronized String toString() {
return STAND_ALONE_ENTRY_FORMAT.format(
new Object[] {
query == null ? "TOTALS" : query,
numQueries,
(queriesPrepared - queriesCompiled) / (double) queriesPrepared,
queryTime,
queryCompilationTime,
queryPreparationTime,
queryRunTime,
queryTime * 1000 / numQueries,
queriesCompiled == 0 ? 0 : queryCompilationTime * 1000 / queriesCompiled,
queriesPrepared == 0 ? 0 : queryPreparationTime * 1000 / queriesPrepared,
queriesRun == 0 ? 0 : queryRunTime * 1000 / queriesRun
});
}
public synchronized String toString(int maxCountLength, double totalDuration) {
String formattedCount =
String.format("%" + maxCountLength + "s", COUNT_FORMAT.format(numQueries));
return FULL_ENTRY_FORMAT.format(
new Object[] {
query == null ? "TOTALS" : query,
formattedCount,
(queriesPrepared - queriesCompiled) / (double) queriesPrepared,
queryTime,
queryCompilationTime,
queryPreparationTime,
queryRunTime,
queryTime * 1000 / numQueries,
queriesCompiled == 0 ? 0 : queryCompilationTime * 1000 / queriesCompiled,
queriesPrepared == 0 ? 0 : queryPreparationTime * 1000 / queriesPrepared,
queriesRun == 0 ? 0 : queryRunTime * 1000 / queriesRun,
queryTime / totalDuration
});
}
public String getDayUrl(int dayOfWeek) {
String part = "";
switch (dayOfWeek) {
case Calendar.MONDAY:
part = "pondeli";
break;
case Calendar.TUESDAY:
part = "utery";
break;
case Calendar.WEDNESDAY:
part = "streda";
break;
case Calendar.THURSDAY:
part = "ctvrtek";
break;
case Calendar.FRIDAY:
part = "patek";
break;
}
return MessageFormat.format("{0}/{1}", urlPrefix, part);
}
private String stats() {
String minString, averageString, maxString, totalString, deviationString;
// compute string representing stats values
if (valueCount == 0) {
minString = "0";
averageString = "0";
maxString = "0";
totalString = "0";
deviationString = "0";
} else {
minString = ((long) (minValue / outputFactor)) + "";
maxString = ((long) (maxValue / outputFactor)) + "";
totalString = ((long) (totalCount / outputFactor)) + "";
if (minValue == maxValue) {
averageString = minString;
deviationString = "0";
} else {
double average = totalCount / valueCount / outputFactor;
double deviation = sqrt((totalCount2 / valueCount) - average * average);
averageString = Double.toString(average);
deviationString = Double.toString(deviation);
}
}
// return stats values according to format
String[] args =
new String[] {
averageString,
valueCount + "",
deviationString,
minString,
maxString,
nullCount + "",
totalString
};
return outputFormat.format(args);
}
private void writeChanges(PrintWriter out) {
List<String> authors = getAuthors();
for (String author : authors) {
List<LogEntry> logEntries = getOrderedAuthorLogEntries(author);
if (logEntries == null || logEntries.isEmpty()) {
continue;
}
out.println(
MessageFormat.format(
AUTHOR_START_NODE,
new String[] {
author,
Integer.toString(getAuthorLogEntriesCount(author)),
Integer.toString(logEntries.size())
}));
for (LogEntry logEntry : logEntries) {
writeLogEntry(out, logEntry);
}
out.println(AUTHOR_END_NODE);
}
}
public static String getTimeShow(String dateString) {
Date thenDate = stringToDate(dateString);
Calendar then = Calendar.getInstance();
then.setTime(thenDate);
Calendar current = Calendar.getInstance();
long differ = current.getTimeInMillis() - then.getTimeInMillis();
if (differ < 0) {
return "Milai";
} else {
if (differ >= 0L && differ < 300000L) {
return "Just now";
}
if (differ >= 300000L && differ < 10800000L) {
return MessageFormat.format("{0}:{1}", then.get(Calendar.HOUR), then.get(Calendar.MINUTE));
}
if (then.get(Calendar.YEAR) != current.get(Calendar.YEAR)) {
return MessageFormat.format(
"{0}/{1}/{2}",
then.get(Calendar.YEAR) - 2000, then.get(Calendar.MONTH), then.get(Calendar.DATE));
}
if (current.get(Calendar.DAY_OF_YEAR) - then.get(Calendar.DAY_OF_YEAR) == 1) {
return "Yesterday";
}
if (then.get(Calendar.MONTH) != current.get(Calendar.MONTH)) {
MDebug.log("[DATE]" + then.get(Calendar.DATE));
return MessageFormat.format(
"{0}/{1}/{2}",
then.get(Calendar.YEAR) - 2000,
then.get(Calendar.MONTH),
then.get(Calendar.DAY_OF_MONTH));
}
int dayDiff = current.get(Calendar.DAY_OF_MONTH) - then.get(Calendar.DAY_OF_MONTH);
if (dayDiff > 7) {
return MessageFormat.format(
"{0}/{1}/{2}",
then.get(Calendar.YEAR) - 2000, then.get(Calendar.MONTH), then.get(Calendar.DATE));
} else {
if (dayDiff == 0) {
int hour = then.get(Calendar.HOUR);
if (0 <= hour && hour < 5) {
return "MidNight";
} else if (5 <= hour && hour < 12) {
return "BeforeNoon";
} else if (12 <= hour && hour < 19) {
return "AfterNoon";
} else if (19 <= hour && hour != 0) {
return "Night";
}
}
if (current.get(Calendar.WEEK_OF_MONTH) == then.get(Calendar.WEEK_OF_MONTH)) {
return getDayString(then.get(Calendar.DAY_OF_WEEK));
} else {
return MessageFormat.format(
"{0}/{1}/{2}",
then.get(Calendar.YEAR) - 2000, then.get(Calendar.MONTH), then.get(Calendar.DATE));
}
}
}
}
private void throwException(String operation, DataElement element) {
throw new IllegalArgumentException(
MessageFormat.format(
TEMPLATE, new Object[] {operation, element, this.getClass().getName()}));
}
public int doEndTag() throws JspException {
String pattern = this.pattern;
ResourceBundle bundle = null;
// get pattern from bundle
if (pattern == null) {
String prefix = null;
bundle = this.bundle;
if (bundle == null) {
BundleTag bundleTag = (BundleTag) findAncestorWithClass(this, BundleTag.class);
if (bundleTag != null) {
bundle = bundleTag.getBundle();
prefix = bundleTag.getPrefix();
}
}
if (bundle == null) {
bundle = I18nUtil.findBundle(pageContext);
}
// get message
try {
pattern = bundle.getString(prefix != null ? prefix + this.key : this.key);
} catch (Exception e) {
pattern = "???" + this.key + "???";
}
}
// format message
String message = pattern;
if ((this.pattern != null || bundle != null) && this.params.size() != 0) {
// set timezone on formatters
TimeZone timeZone = null;
TimeZoneTag timeZoneTag = (TimeZoneTag) findAncestorWithClass(this, TimeZoneTag.class);
if (timeZoneTag != null) timeZone = timeZoneTag.getTimeZone();
if (timeZone == null) timeZone = I18nUtil.findTimeZone(pageContext);
MessageFormat formatter = new MessageFormat(pattern, I18nUtil.findLocale(pageContext));
for (Format format : formatter.getFormatsByArgumentIndex()) {
if (format != null && format instanceof DateFormat) {
((DateFormat) format).setTimeZone(timeZone);
}
}
// now format!
message = formatter.format(getParams());
}
// output text
if (this.var == null) {
try {
pageContext.getOut().print(message);
} catch (IOException e) {
throw new JspException(e);
}
}
// store result
else {
pageContext.setAttribute(this.var, message, this.scope);
}
// clear old state
this.pattern = null;
this.bundle = null;
this.key = null;
this.var = null;
this.scope = PageContext.PAGE_SCOPE;
// continue with page
return EVAL_PAGE;
}
private void _displayImgInFrame() {
final JFrame frame = new JFrame("Google Static Map");
GUIUtils.setAppIcon(frame, "71.png");
// frame.setDefaultCloseOperation(DISPOSE_ON_CLOSE);
JLabel imgLbl = new JLabel(new ImageIcon(_img));
imgLbl.setToolTipText(
MessageFormat.format(
"<html>Image downloaded from URI<br>size: w={0}, h={1}</html>",
_img.getWidth(), _img.getHeight()));
GUIUtils.centerOnScreen(frame);
frame.setVisible(true);
frame.setContentPane(imgLbl);
frame.pack();
frame.setResizable(false);
imgLbl.addMouseListener(
new MouseListener() {
public void mouseClicked(MouseEvent e) {}
public void mousePressed(MouseEvent e) {
System.out.println("Mouse Listener: Mouse Clicked!");
mapIsUp = 1;
sentX = 0.00;
clickX = e.getX(); // Latitude
clickY = e.getY(); // Longitude
if ((clickX < (_img.getWidth() / 2))
&& (clickY < (_img.getHeight() / 2))) { // 1st quadrant positive values
sentX =
Double.parseDouble(ttfLati.getText())
+ (((-1 * (_img.getWidth() / 2)) + clickX) * pixelX); // Add to latitude
sentY =
Double.parseDouble(ttfLongi.getText())
+ (((_img.getHeight() / 2) - clickY) * pixelY); // Add to Longitude
System.out.println("Top left");
} else if ((clickX > (_img.getWidth() / 2))
&& (clickY > (_img.getHeight() / 2))) { // 2nd quadrant negative values
sentX =
Double.parseDouble(ttfLati.getText())
+ (((-1 * (_img.getHeight() / 2)) + clickX) * pixelX);
sentY =
Double.parseDouble(ttfLongi.getText())
+ (((_img.getHeight() / 2) - clickY) * pixelY);
System.out.println("Bottom Right");
} else if ((clickX < (_img.getWidth() / 2))
&& (clickY > (_img.getHeight() / 2))) { // 3rd quadrant 1 positive 1 negative
sentX =
Double.parseDouble(ttfLati.getText())
+ (((-1 * (_img.getWidth() / 2)) + clickX) * pixelX);
sentY =
Double.parseDouble(ttfLongi.getText())
+ (((_img.getHeight() / 2) - clickY) * pixelY);
System.out.println("Bottom Left");
} else { // 3rd quadrant 1 positive 1 negative
sentX =
Double.parseDouble(ttfLati.getText())
+ (((-1 * (_img.getHeight() / 2)) + clickX) * pixelX);
sentY =
Double.parseDouble(ttfLongi.getText())
+ (((_img.getHeight() / 2) - clickY) * pixelY);
System.out.println("Top Right");
}
BigDecimal toCoordsX = new BigDecimal(sentX);
BigDecimal toCoordsY = new BigDecimal(sentY);
sentX =
(toCoordsX.setScale(6, BigDecimal.ROUND_HALF_UP))
.doubleValue(); // allows values of up to 6 decimal places
sentY = (toCoordsY.setScale(6, BigDecimal.ROUND_HALF_UP)).doubleValue();
getCoords = sentX + " " + sentY;
ttfLati.setText(Double.toString(sentX));
ttfLongi.setText(Double.toString(sentY));
System.out.println("... saving Coordinates");
saveLocation(
getCoords); // pass getCoords through saveLocation. this string is appended to the
// savedLocations file.
System.out.println("... savedCoordinates");
// Update the Locations ComboBox with new additions
ttfSave.removeAllItems(); // re-populate the ComboBox
System.out.println("removed items");
getSavedLocations(); // run through file to get all locations
for (int i = 0; i < loc.size(); i++) ttfSave.addItem(loc.get(i));
System.out.println("update combobox");
mapIsUp = 0;
frame.dispose(); // closes window
startTaskAction(); // pops up a new window
}
public void saveLocation(String xy) {
BufferedWriter f = null; // created a bufferedWriter object
try {
f =
new BufferedWriter(
new FileWriter(
"savedLocations.txt",
true)); // evaluated true if file has not been created yet
f.write(xy); // append passed coordinates and append to file if exists
f.newLine();
f.flush();
} catch (IOException ioe) {
ioe.printStackTrace();
} finally { // close the file
if (f != null) {
try {
f.close();
} catch (IOException e) { // any error, catch exception
System.err.println("Error: " + e.getMessage());
}
}
}
}
public void mouseReleased(MouseEvent e) {}
public void mouseEntered(MouseEvent e) {}
public void mouseExited(MouseEvent e) {}
});
}
/**
* Parse the section file and fill in the Dbase.
*
* @return Success code
*/
public void parse() throws Exception {
JOAParameter tempProperties[] = new JOAParameter[100];
FileInputStream in = null;
DataInputStream inData = null;
short inShort = 0;
long bytesRead = 0;
long bytesInFile = mFile.length();
short[] sarray = new short[1];
int mTotalStns = 0;
EPSProgressDialog mProgress = new EPSProgressDialog(new Frame(), mProgressStr, Color.blue);
mProgress.setVisible(true);
// Get an epic key database specific to JOA
EPIC_Key_DB mEpicKeyDB = new EPIC_Key_DB("joa_epic.key");
// Get an epic key database specific to JOA
EPIC_Key_DB mOrigEpicKeyDB = new EPIC_Key_DB("epic.key");
// create a vector for temporary storage of the dbases
Vector dBases = new Vector(100);
try {
in = new FileInputStream(mFile);
BufferedInputStream bis = new BufferedInputStream(in, 1000000);
inData = new DataInputStream(bis);
// read version
short vers = inData.readShort();
bytesRead += 2;
if (vers < 2) {
FileImportException fiex = new FileImportException();
String errStr = "Invalid version for a JOA binary file";
fiex.setErrorType(errStr);
throw fiex;
}
// read number of bytes in file description string
inShort = inData.readShort();
bytesRead += 2;
// read the file description String
byte buf[] = new byte[inShort];
inData.read(buf, 0, inShort);
String fileDescrip = new String(buf);
bytesRead += inShort;
// create a new open file object
JOADataFile of = new JOADataFile(fileDescrip);
// read the number of sections
int numSections = inData.readShort();
bytesRead += 2;
// read each section
JOASection sech;
int ord = 0;
for (int s = 0; s < numSections; s++) {
mProgress.setPercentComplete(100.0 * ((double) bytesRead / (double) bytesInFile));
// read the section header
inShort = inData.readShort();
bytesRead += 2;
byte buf1[] = new byte[inShort];
inData.read(buf1, 0, inShort);
String sectionDescrip = new String(buf1);
bytesRead += inShort;
// read the ship code
byte bufsc[] = new byte[2];
bufsc[0] = inData.readByte();
bufsc[1] = inData.readByte();
String shipCode = new String(bufsc);
bytesRead += 2;
// read num casts
int numCasts = inData.readShort();
bytesRead += 2;
// read num parameters
int numVars = inData.readShort();
bytesRead += 2;
// quality code
int qcStd = 1;
if (vers == 4) {
qcStd = inData.readShort();
bytesRead += 2;
}
// create a new section
of.mNumSections++;
sech = new JOASection(of.mNumSections, sectionDescrip, shipCode, numCasts, numVars);
if (vers == 2) {
// read the properties
byte bufv[] = new byte[4];
for (int p = 0; p < numVars; p++) {
// parameter name
inData.read(bufv, 0, 4);
String tempVar = new String(bufv);
bytesRead += 4;
// units
inShort = inData.readShort();
bytesRead += 2;
String units = null;
if (inShort > 0) {
byte buf11[] = new byte[inShort];
inData.read(buf11, 0, inShort);
units = new String(buf11);
bytesRead += inShort;
}
// convert varnames to UC
tempVar.toUpperCase();
// create new property
tempProperties[p] = new JOAParameter(tempVar, units);
// add this property to the section property list
if (tempProperties[p].mUnits == null) {
tempProperties[p].mUnits =
EPS_Util.paramNameToJOAUnits(false, tempProperties[0].mVarLabel);
}
if (tempProperties[p].mUnits == null) {
tempProperties[p].mUnits = new String("na");
}
tempProperties[p].mCastOrObs = EPSConstants.ALL_OBS;
// read the actual scale
int actScale = inData.readShort();
bytesRead += 2;
if (actScale != 0) tempProperties[p].mActScale = 1.0 / (double) actScale;
else tempProperties[p].mActScale = 1.0;
// read the actual origin
int actOrigin = inData.readShort();
tempProperties[p].mActOrigin = (double) actOrigin * tempProperties[p].mActScale;
// read reverse y
int reverseY = inData.readShort();
bytesRead += 2;
if (reverseY == 0) tempProperties[p].mReverseY = false;
else tempProperties[p].mReverseY = true;
tempProperties[p].mWasCalculated = false;
}
} else {
// read the properties
String tempVar = null;
for (int p = 0; p < numVars; p++) {
// length of parameter name
inShort = inData.readShort();
bytesRead += 2;
// parameter name
if (inShort > 0) {
byte buf13[] = new byte[inShort];
inData.read(buf13, 0, inShort);
tempVar = new String(buf13);
bytesRead += inShort;
}
// units
inShort = inData.readShort();
bytesRead += 2;
String units = null;
if (inShort > 0) {
byte buf11[] = new byte[inShort];
inData.read(buf11, 0, inShort);
units = new String(buf11);
bytesRead += inShort;
}
// convert varnames to UC
tempVar = tempVar.toUpperCase();
// create new property
tempProperties[p] = new JOAParameter(tempVar, units);
// add this property to the section property list
if (tempProperties[p].mUnits == null) {
tempProperties[p].mUnits =
EPS_Util.paramNameToJOAUnits(false, tempProperties[0].mVarLabel);
}
if (tempProperties[p].mUnits == null) {
tempProperties[p].mUnits = new String("na");
}
tempProperties[p].mCastOrObs = EPSConstants.ALL_OBS;
// read the actual scale
int actScale = inData.readShort();
bytesRead += 2;
if (actScale != 0) tempProperties[p].mActScale = 1.0 / (double) actScale;
else tempProperties[p].mActScale = 1.0;
// read the actual origin
int actOrigin = inData.readShort();
tempProperties[p].mActOrigin = (double) actOrigin * tempProperties[p].mActScale;
// read reverse y
int reverseY = inData.readShort();
bytesRead += 2;
if (reverseY == 0) tempProperties[p].mReverseY = false;
else tempProperties[p].mReverseY = true;
tempProperties[p].mWasCalculated = false;
}
}
// read the cast headers
for (int c = 0; c < numCasts; c++) {
// read station number
inShort = inData.readShort();
bytesRead += 2;
byte bufx[] = new byte[inShort];
inData.read(bufx, 0, inShort);
String stnNum = new String(bufx);
bytesRead += inShort;
// read cast number
int castNum = inData.readShort();
bytesRead += 2;
double myLat = 0.0;
double myLon = 0.0;
if (vers == 2) {
// read latitude/lon
int lat = inData.readInt();
bytesRead += 4;
int lon = inData.readInt();
bytesRead += 4;
myLat = lat * 0.001;
myLon = lon * 0.001;
} else if (vers > 2) {
// read latitude/lon
myLat = inData.readDouble();
bytesRead += 8;
myLon = inData.readDouble();
bytesRead += 4;
}
// read number of bottles
int numBottles = inData.readShort();
bytesRead += 2;
// read the date
int year = inData.readInt();
bytesRead += 4;
int month = inData.readInt();
bytesRead += 4;
int day = inData.readInt();
bytesRead += 4;
int hour = inData.readInt();
bytesRead += 4;
double min = inData.readDouble();
bytesRead += 8;
// read bottom
int bottomdbar = inData.readInt();
// read station quality
int stnQual = inData.readShort();
bytesRead += 2;
ord++;
JOAStation sh =
new JOAStation(
ord,
shipCode,
stnNum,
castNum,
myLat,
myLon,
numBottles,
year,
month,
day,
hour,
min,
bottomdbar,
stnQual);
sech.mStations.addElement(sh);
sh.setType("JOA BOTTLE");
// make a DBase object
Dbase db = new Dbase();
// add the global attributes
db.addEPSAttribute(
"CRUISE", EPCHAR, sech.mSectionDescription.length(), sech.mSectionDescription);
db.addEPSAttribute("CAST", EPCHAR, sh.mStnNum.length(), sh.mStnNum);
sarray[0] = (short) sh.mBottomDepthInDBARS;
db.addEPSAttribute("WATER_DEPTH", EPSHORT, 1, sarray);
db.addEPSAttribute("DATA_ORIGIN", EPCHAR, sech.mShipCode.length(), sech.mShipCode);
String dType = sh.getType();
if (dType == null) dType = "UNKN";
db.addEPSAttribute("DATA_TYPE", EPCHAR, dType.length(), dType);
sarray[0] = (short) stnQual;
db.addEPSAttribute("STN_QUALITY", EPSHORT, 1, sarray);
db.setDataType("JOA BOTTLE");
// add to temporary collection
dBases.addElement(db);
}
int start = mTotalStns;
int end = sech.mStations.size() + mTotalStns;
for (int sc = start; sc < end; sc++) {
mProgress.setPercentComplete(100.0 * ((double) bytesRead / (double) bytesInFile));
// get a dBase
Dbase db = (Dbase) dBases.elementAt(sc);
// get a station
JOAStation sh = (JOAStation) sech.mStations.elementAt(sc - start);
// create an array of arrays to store the data
double[][] va = new double[sech.mNumVars][sh.mNumBottles];
int[][] qc = new int[sech.mNumVars][sh.mNumBottles];
short[] bqc = new short[sh.mNumBottles];
int presPos = 0;
// read the bottles
for (int b = 0; b < sh.mNumBottles; b++) {
// read the bottle quality code
bqc[b] = inData.readShort();
bytesRead += 2;
for (int v = 0; v < sech.mNumVars; v++) {
// store the position of the PRES variable
if (tempProperties[v].mVarLabel.equals("PRES")) presPos = v;
// get the measured parameter
double dVarVal = EPSConstants.MISSINGVALUE;
try {
dVarVal = inData.readDouble();
} catch (IOException e) {
FileImportException fiex = new FileImportException();
String errStr =
"Error reading the parameter data. "
+ "\n"
+ "Bottle #"
+ b
+ " Parameter #"
+ v;
fiex.setErrorType(errStr);
throw fiex;
}
bytesRead += 8;
// store the value in the multidimensional array
va[v][b] = dVarVal;
// get the quality flag
short flag = (short) EPSConstants.MISSINGVALUE;
try {
flag = inData.readShort();
} catch (IOException e) {
FileImportException fiex = new FileImportException();
String errStr =
"Error reading the parameter quality code. "
+ "\n"
+ "Bottle #"
+ b
+ " Parameter #"
+ v;
fiex.setErrorType(errStr);
throw fiex;
}
bytesRead += 2;
qc[v][b] = flag;
} // for v
} // for b
// add the bottle quality codes as an attribute
db.addEPSAttribute("BOTTLE_QUALITY_CODES", EPSHORT, sh.mNumBottles, bqc);
// create the axes time = 0, depth = 1, lat = 2, lon = 3
Axis timeAxis = new Axis();
Axis zAxis = new Axis();
Axis latAxis = new Axis();
Axis lonAxis = new Axis();
// time axis
timeAxis.setName("time");
timeAxis.setTime(true);
timeAxis.setUnlimited(false);
timeAxis.setAxisType(EPTAXIS);
timeAxis.setLen(1);
int hour = 0;
if (sh.mHour != EPSConstants.MISSINGVALUE) hour = sh.mHour;
double mins = 0;
if (sh.mMinute != EPSConstants.MISSINGVALUE) mins = sh.mMinute;
// make the time axis units
String date = "days since ";
int min = (int) mins;
double fmin = mins - min;
int secs = (int) (fmin * 60.0);
double fsec = (fmin * 60.0) - secs;
int msec = (int) (fsec * 1000.0);
String fs = String.valueOf(fsec);
fs = fs.substring(fs.indexOf(".") + 1, fs.length()).trim();
int f = 0;
if (fs != null && fs.length() > 0) f = Integer.valueOf(fs).intValue();
// sprintf(time_string,"%04d-%02d-%02d %02d:%02d:%02d.%03d",yr,mon,day,hr,min,sec,f);
String frmt =
new String(
"{0,number,####}-{1,number,00}-{2,number,00} {3,number,00}:{4,number,00}:{5,number,00}.{6,number,000}");
MessageFormat msgf = new MessageFormat(frmt);
Object[] objs = {
new Integer(sh.mYear),
new Integer(sh.mMonth),
new Integer(sh.mDay),
new Integer(hour),
new Integer(min),
new Integer(secs),
new Integer(f)
};
StringBuffer out = new StringBuffer();
msgf.format(objs, out, null);
String time_string = new String(out);
date = date + time_string;
timeAxis.addAttribute(0, "units", EPCHAR, date.length(), date);
timeAxis.setUnits(date);
GeoDate gd = null;
try {
gd = new GeoDate(sh.mMonth, sh.mDay, sh.mYear, hour, min, secs, msec);
GeoDate[] ta = {gd};
MultiArray tma = new ArrayMultiArray(ta);
timeAxis.setData(tma);
db.setAxis(timeAxis);
} catch (Exception ex) {
GeoDate[] ta = {new GeoDate()};
MultiArray tma = new ArrayMultiArray(ta);
timeAxis.setData(tma);
db.setAxis(timeAxis);
}
// add the time axes variable
EPSVariable var = new EPSVariable();
var.setOname("time");
var.setDtype(EPDOUBLE);
var.setVclass(Double.TYPE);
var.addAttribute(0, "units", EPCHAR, date.length(), date);
var.setUnits(date);
double[] vta = {0.0};
MultiArray vtma = new ArrayMultiArray(vta);
try {
var.setData(vtma);
} catch (Exception ex) {
}
db.addEPSVariable(var);
// z axis
zAxis.setName("depth");
zAxis.setTime(false);
zAxis.setUnlimited(false);
zAxis.setLen(sh.mNumBottles);
zAxis.setAxisType(EPZAXIS);
zAxis.addAttribute(0, "FORTRAN_format", EPCHAR, 5, "f10.1");
zAxis.addAttribute(1, "units", EPCHAR, 4, "dbar");
zAxis.setUnits("dbar");
zAxis.setFrmt("f10.1");
// zAxis.addAttribute(2, "type", EPCHAR, 0, "");
sarray[0] = 1;
zAxis.addAttribute(2, "epic_code", EPSHORT, 1, sarray);
double[] za = new double[sh.mNumBottles];
for (int b = 0; b < sh.mNumBottles; b++) {
za[b] = va[presPos][b];
}
MultiArray zma = new ArrayMultiArray(za);
zAxis.setData(zma);
db.setAxis(zAxis);
// add the z axes variables
var = new EPSVariable();
var.setOname("depth");
var.setDtype(EPDOUBLE);
var.setVclass(Double.TYPE);
var.addAttribute(0, "FORTRAN_format", EPCHAR, 5, "f10.1");
var.addAttribute(1, "units", EPCHAR, 4, "dbar");
var.setUnits("dbar");
var.setFrmt("f10.1");
// var.addAttribute(2, "type", EPCHAR, 0, "");
sarray[0] = 1;
var.addAttribute(2, "epic_code", EPSHORT, 1, sarray);
MultiArray zvma = new ArrayMultiArray(za);
try {
var.setData(zvma);
} catch (Exception ex) {
}
db.addEPSVariable(var);
// lat axis
latAxis.setName("latitude");
latAxis.setTime(false);
latAxis.setUnlimited(false);
latAxis.setLen(1);
latAxis.setAxisType(EPYAXIS);
latAxis.addAttribute(0, "FORTRAN_format", EPCHAR, 5, "f10.4");
latAxis.addAttribute(1, "units", EPCHAR, 7, "degrees");
latAxis.setUnits("degrees");
latAxis.setFrmt("f10.4");
// latAxis.addAttribute(2, "type", EPCHAR, 0, "");
sarray[0] = 500;
latAxis.addAttribute(2, "epic_code", EPSHORT, 1, sarray);
double lat = sh.mLat;
double[] la = {lat};
MultiArray lma = new ArrayMultiArray(la);
latAxis.setData(lma);
db.setAxis(latAxis);
// add the y axes variable
var = new EPSVariable();
var.setOname("latitude");
var.setDtype(EPDOUBLE);
var.setVclass(Double.TYPE);
var.addAttribute(0, "FORTRAN_format", EPCHAR, 5, "f10.4");
var.addAttribute(1, "units", EPCHAR, 7, "degrees");
var.setUnits("degrees");
var.setFrmt("f10.4");
// var.addAttribute(2, "type", EPCHAR, 0, "");
sarray[0] = 500;
var.addAttribute(2, "epic_code", EPSHORT, 1, sarray);
MultiArray yvma = new ArrayMultiArray(la);
try {
var.setData(yvma);
} catch (Exception ex) {
}
db.addEPSVariable(var);
// lon axis
lonAxis.setName("longitude");
lonAxis.setTime(false);
lonAxis.setUnlimited(false);
lonAxis.setLen(1);
lonAxis.setAxisType(EPXAXIS);
lonAxis.addAttribute(0, "FORTRAN_format", EPCHAR, 5, "f10.4");
lonAxis.addAttribute(1, "units", EPCHAR, 7, "degrees");
lonAxis.setUnits("degrees");
lonAxis.setFrmt("f10.4");
// lonAxis.addAttribute(2, "type", EPCHAR, 0, "");
sarray[0] = 502;
lonAxis.addAttribute(2, "epic_code", EPSHORT, 1, sarray);
double lon = sh.mLon;
double[] lla = {lon};
lma = new ArrayMultiArray(lla);
lonAxis.setData(lma);
db.setAxis(lonAxis);
// add the x axes variable
var = new EPSVariable();
var.setOname("longitude");
var.setDtype(EPDOUBLE);
var.setVclass(Double.TYPE);
var.addAttribute(0, "FORTRAN_format", EPCHAR, 5, "f10.4");
var.addAttribute(1, "units", EPCHAR, 7, "degrees");
var.setUnits("degrees");
var.setFrmt("f10.4");
// var.addAttribute(2, "type", EPCHAR, 0, "");
sarray[0] = 502;
var.addAttribute(2, "epic_code", EPSHORT, 1, sarray);
MultiArray xvma = new ArrayMultiArray(lla);
try {
var.setData(xvma);
} catch (Exception ex) {
}
db.addEPSVariable(var);
// add the measured variables
for (int v = 0; v < sech.mNumVars; v++) {
// if (presPos == v)
// continue;
// create an array of measured EPSVariables for this database
EPSVariable epsVar = new EPSVariable();
// initialize the new EPSVariables
// look this variable up in JOA EPIC_Key. find matching entry in original EPIC Key
String oname = tempProperties[v].mVarLabel;
String sname = null;
String lname = null;
String gname = null;
String units = null;
String ffrmt = null;
int keyID = -99;
int type = -99;
try {
keyID = mEpicKeyDB.findKey(tempProperties[v].mVarLabel);
Key key = mOrigEpicKeyDB.findKey(keyID);
gname = key.getGname();
sname = key.getSname();
lname = key.getLname();
units = key.getUnits();
ffrmt = key.getFrmt();
type = key.getType();
} catch (Exception e) {
lname = tempProperties[v].mVarLabel;
gname = tempProperties[v].mVarLabel;
sname = tempProperties[v].mVarLabel;
units = tempProperties[v].mUnits;
}
// make a new variable
epsVar = new EPSVariable();
epsVar.setOname(oname);
epsVar.setSname(sname);
epsVar.setLname(lname);
epsVar.setGname(gname);
epsVar.setDtype(EPDOUBLE);
epsVar.setVclass(Double.TYPE);
int numAttributes = 0;
if (ffrmt != null) {
epsVar.addAttribute(numAttributes++, "FORTRAN_format", EPCHAR, ffrmt.length(), ffrmt);
epsVar.setFrmt(ffrmt);
}
if (units != null && units.length() > 0) {
epsVar.addAttribute(numAttributes++, "units", EPCHAR, units.length(), units);
epsVar.setUnits(units);
}
if (keyID >= 0) {
sarray[0] = (short) type;
// epsVar.addAttribute(numAttributes++, "type", EPSHORT, 1, sarray);
}
if (keyID >= 0) {
sarray[0] = (short) keyID;
epsVar.addAttribute(numAttributes++, "epic_code", EPSHORT, 1, sarray);
}
// add the quality code attribute
String qcVar = oname + "_QC";
epsVar.addAttribute(numAttributes++, "OBS_QC_VARIABLE", EPCHAR, qcVar.length(), qcVar);
// connect variable to axis
epsVar.setDimorder(0, 0);
epsVar.setDimorder(1, 1);
epsVar.setDimorder(2, 2);
epsVar.setDimorder(3, 3);
epsVar.setT(timeAxis);
epsVar.setZ(zAxis);
epsVar.setY(latAxis);
epsVar.setX(lonAxis);
// set the data
// create storage for the measured variables
double[][][][] vaa = new double[1][sh.mNumBottles][1][1];
for (int b = 0; b < sh.mNumBottles; b++) {
vaa[0][b][0][0] = va[v][b];
}
MultiArray mdma = new ArrayMultiArray(vaa);
try {
epsVar.setData(mdma);
} catch (Exception ex) {
System.out.println("throwing");
}
// add the variable to the database
db.addEPSVariable(epsVar);
// create the quality code variable
epsVar = new EPSVariable();
epsVar.setOname(oname + "_QC");
epsVar.setSname(sname + "_QC");
epsVar.setLname(sname + "_QC");
epsVar.setGname(sname + "_QC");
epsVar.setDtype(EPSHORT);
epsVar.setVclass(Short.TYPE);
// connect variable to axis
epsVar.setDimorder(0, 0);
epsVar.setDimorder(1, 1);
epsVar.setDimorder(2, 2);
epsVar.setDimorder(3, 3);
epsVar.setT(timeAxis);
epsVar.setZ(zAxis);
epsVar.setY(latAxis);
epsVar.setX(lonAxis);
// set the data
// create storage for the qc variables
short[][][][] qcaa = new short[1][sh.mNumBottles][1][1];
for (int b = 0; b < sh.mNumBottles; b++) {
qcaa[0][b][0][0] = (short) qc[v][b];
}
MultiArray qcma = new ArrayMultiArray(qcaa);
try {
epsVar.setData(qcma);
} catch (Exception ex) {
System.out.println("throwing");
}
// add the qc variable to the database
db.addEPSVariable(epsVar);
} // for v
}
mTotalStns += numCasts;
} // for sc
// read the file comments
StringBuffer sb = null;
while (true) {
try {
// read continuation line
inShort = inData.readShort();
bytesRead += 2;
if (inShort == 1) {
// read number of bytes in file description string
inShort = inData.readShort();
bytesRead += 2;
// read the file description String
byte buf2[] = new byte[inShort];
inData.read(buf2, 0, inShort);
String commentLine = new String(buf2);
bytesRead += inShort;
if (sb == null) sb = new StringBuffer(commentLine);
else sb.append(commentLine);
}
} catch (IOException e) {
break;
}
} // while true
if (sb != null) {
// make attributes for the comments
mOwnerDBase.setDataComment(new String(sb));
}
// make a sub database in the dbase
mOwnerDBase.createSubEntries(mTotalStns, mFile.getName());
for (int d = 0; d < mTotalStns; d++) {
Dbase db = (Dbase) dBases.elementAt(d);
mOwnerDBase.addSubEntry(db);
}
mProgress.setPercentComplete(100.0);
mProgress.setVisible(false);
mProgress.dispose();
in.close();
} catch (IOException e) {
mProgress.setVisible(false);
mProgress.dispose();
throw e;
}
}