/* * Similar to makeSureValInRange function except it is meant to return * more than one values of valid user input via LinkedList and it will * not return unless all of the input is valid * @param1 scanner object * @param2 lowerbound int * @param3 upperbound int * @param4 String that represents the entity we are entering the values for */ public static LinkedList<Integer> makeSureValInRange2( Scanner scan, int lowerbound, int upperbound, String inputFor) { assert (lowerbound <= upperbound); LinkedList<Integer> list = new LinkedList<Integer>(); System.out.println( SearchCriteria.prioritySetUpString( SearchCriteria.StringEnum.SELECT_CRITERIA, inputFor)); // prints the options to the user int value = scan.nextInt(); if (valInRange(lowerbound, upperbound, value)) { list.add(value); // If the first inputted is in range then we add more values boolean done = false; int i = lowerbound; while (!done && i < upperbound) { // keep looking for input until user enters a duplicate value // or the LinkedList of input is full value = scan.nextInt(); if (!list.contains(value) && valInRange(lowerbound, upperbound, value)) list.add(value); else done = true; i++; } return list; } else { // If the first value intered is not valid, then we return a null, which means that // we use default values (all values within range) System.out.println( SearchCriteria.prioritySetUpString(SearchCriteria.StringEnum.DEFAULT, inputFor)); return null; } }
public void deleteNumberDefByNextIdx( CFSecurityAuthorization Authorization, CFDbTestValueByNextIdxKey argKey) { final String S_ProcName = "deleteNumberDefByNextIdx"; CFDbTestNumberDefBuff cur; LinkedList<CFDbTestNumberDefBuff> matchSet = new LinkedList<CFDbTestNumberDefBuff>(); Iterator<CFDbTestNumberDefBuff> values = dictByPKey.values().iterator(); while (values.hasNext()) { cur = values.next(); if (argKey.equals(cur)) { matchSet.add(cur); } } Iterator<CFDbTestNumberDefBuff> iterMatch = matchSet.iterator(); while (iterMatch.hasNext()) { cur = iterMatch.next(); String subClassCode = cur.getClassCode(); if ("NUMD".equals(subClassCode)) { schema.getTableNumberDef().deleteNumberDef(Authorization, cur); } else if ("NUMC".equals(subClassCode)) { schema.getTableNumberCol().deleteNumberCol(Authorization, (CFDbTestNumberColBuff) cur); } else if ("NUMT".equals(subClassCode)) { schema.getTableNumberType().deleteNumberType(Authorization, (CFDbTestNumberTypeBuff) cur); } else { throw CFLib.getDefaultExceptionFactory() .newUnsupportedClassException( getClass(), S_ProcName, "subClassCode", cur, "Instance of or subclass of NumberDef must not be \"" + subClassCode + "\""); } } }
public void parseInputFile(File inputFile) throws IOException { geneFeatures.clear(); otherRecords.clear(); try { GFFEntrySet gffEntries = GFFTools.readGFF(inputFile); Iterator itr = gffEntries.lineIterator(); int count = 0; int intronFeatures = 0; LinkedList<GFFRecord> cdsRecs = new LinkedList<GFFRecord>(); while (itr.hasNext()) { Object val = itr.next(); if (val instanceof GFFRecord) { GFFRecord rec = (GFFRecord) val; count += 1; if (rec.getFeature().endsWith("gene")) { GeneFeatures gf = new GeneFeatures(rec); geneFeatures.put(gf.id, gf); } else if (rec.getFeature().equals("CDS")) { cdsRecs.addLast(rec); } else { otherRecords.add(rec); } } } for (GFFRecord rec : cdsRecs) { Map<String, List<String>> attrs = decodeAttrMap(rec); if (geneFeatures.containsKey(attrs.get("Parent").get(0))) { geneFeatures.get(attrs.get("Parent").get(0)).addCDS(rec, attrs); } else { System.err.println("Unknown CDS Parent: " + attrs.get("Parent").get(0)); } } for (String k : geneFeatures.keySet()) { GeneFeatures gf = geneFeatures.get(k); if (gf.cds != null && gf.cds.size() > 1) { intronFeatures++; } } System.err.println("# GFF Records: " + count); System.err.println("# Gene Feature Sets: " + geneFeatures.size()); System.err.println("\t# Intron-Features: " + intronFeatures); } catch (ParserException e) { e.printStackTrace(); } catch (BioException e) { e.printStackTrace(); } }
public Collection<ExptCondition> getAllConditions() throws SQLException { LinkedList<Integer> conds = new LinkedList<Integer>(); Statement s = cxn.createStatement(); ResultSet rs = s.executeQuery("select distinct(e.condition) from experiment e"); while (rs.next()) { conds.add(rs.getInt(1)); } rs.close(); s.close(); return loader.loadAllExptConditions(conds); }
public Iterator<String> execute(String input) { try { ps.setString(1, input); ResultSet rs = ps.executeQuery(); LinkedList<String> results = new LinkedList<String>(); while (rs.next()) { results.add(rs.getString(1)); } rs.close(); return results.iterator(); } catch (SQLException e) { e.printStackTrace(); } return new EmptyIterator<String>(); }
@Override public Iterator<TickClient> getLocalItems(int itemTypes, Room R) { LinkedList<TickClient> localItems = null; for (TickClient C : tickers) { switch (itemTypes) { case 0: if (C.getClientObject() instanceof MOB) { if (((MOB) C.getClientObject()).getStartRoom() == R) { if (localItems == null) localItems = new LinkedList<TickClient>(); localItems.add(C); } } else if ((C.getClientObject() instanceof ItemTicker) && ((((ItemTicker) C.getClientObject()).properLocation() == R))) { if (localItems == null) localItems = new LinkedList<TickClient>(); localItems.add(C); } break; case 1: if ((C.getClientObject() instanceof ItemTicker) && ((((ItemTicker) C.getClientObject()).properLocation() == R))) { if (localItems == null) localItems = new LinkedList<TickClient>(); localItems.add(C); } break; case 2: if ((C.getClientObject() instanceof MOB) && (((MOB) C.getClientObject()).getStartRoom() == R)) { if (localItems == null) localItems = new LinkedList<TickClient>(); localItems.add(C); } break; } } if (localItems == null) return null; return localItems.iterator(); }
public void deleteFeeByIdIdx(CFSecurityAuthorization Authorization, CFAccFeePKey argKey) { CFAccFeeBuff cur; LinkedList<CFAccFeeBuff> matchSet = new LinkedList<CFAccFeeBuff>(); Iterator<CFAccFeeBuff> values = dictByPKey.values().iterator(); while (values.hasNext()) { cur = values.next(); if (argKey.equals(cur)) { matchSet.add(cur); } } Iterator<CFAccFeeBuff> iterMatch = matchSet.iterator(); while (iterMatch.hasNext()) { cur = iterMatch.next(); deleteFee(Authorization, cur); } }
public void deleteDelSubDep3ByIdIdx(CFBamAuthorization Authorization, CFBamScopePKey argKey) { CFBamDelSubDep3Buff cur; LinkedList<CFBamDelSubDep3Buff> matchSet = new LinkedList<CFBamDelSubDep3Buff>(); Iterator<CFBamDelSubDep3Buff> values = dictByPKey.values().iterator(); while (values.hasNext()) { cur = values.next(); if (argKey.equals(cur)) { matchSet.add(cur); } } Iterator<CFBamDelSubDep3Buff> iterMatch = matchSet.iterator(); while (iterMatch.hasNext()) { cur = iterMatch.next(); deleteDelSubDep3(Authorization, cur); } }
public void deleteISOCurrencyByCcyNmIdx( CFBamAuthorization Authorization, CFBamISOCurrencyByCcyNmIdxKey argKey) { CFBamISOCurrencyBuff cur; LinkedList<CFBamISOCurrencyBuff> matchSet = new LinkedList<CFBamISOCurrencyBuff>(); Iterator<CFBamISOCurrencyBuff> values = dictByPKey.values().iterator(); while (values.hasNext()) { cur = values.next(); if (argKey.equals(cur)) { matchSet.add(cur); } } Iterator<CFBamISOCurrencyBuff> iterMatch = matchSet.iterator(); while (iterMatch.hasNext()) { cur = iterMatch.next(); deleteISOCurrency(Authorization, cur); } }
public void deleteLoaderBehaviourByUNameIdx( CFSecurityAuthorization Authorization, CFDbTestLoaderBehaviourByUNameIdxKey argKey) { CFDbTestLoaderBehaviourBuff cur; LinkedList<CFDbTestLoaderBehaviourBuff> matchSet = new LinkedList<CFDbTestLoaderBehaviourBuff>(); Iterator<CFDbTestLoaderBehaviourBuff> values = dictByPKey.values().iterator(); while (values.hasNext()) { cur = values.next(); if (argKey.equals(cur)) { matchSet.add(cur); } } Iterator<CFDbTestLoaderBehaviourBuff> iterMatch = matchSet.iterator(); while (iterMatch.hasNext()) { cur = iterMatch.next(); deleteLoaderBehaviour(Authorization, cur); } }
/** * Preconditions: 1. flag must be one of TMSTARTRSCAN, TMENDRSCAN, TMNOFLAGS or TMSTARTTRSCAN | * TMENDRSCAN 2. if flag isn't TMSTARTRSCAN or TMSTARTRSCAN | TMENDRSCAN, a recovery scan must be * in progress * * <p>Postconditions: 1. list of prepared xids is returned */ public Xid[] recover(int flag) throws XAException { // Check preconditions if (flag != TMSTARTRSCAN && flag != TMENDRSCAN && flag != TMNOFLAGS && flag != (TMSTARTRSCAN | TMENDRSCAN)) throw new PGXAException(GT.tr("Invalid flag"), XAException.XAER_INVAL); // We don't check for precondition 2, because we would have to add some additional state in // this object to keep track of recovery scans. // All clear. We return all the xids in the first TMSTARTRSCAN call, and always return // an empty array otherwise. if ((flag & TMSTARTRSCAN) == 0) return new Xid[0]; else { try { Statement stmt = conn.createStatement(); try { // If this connection is simultaneously used for a transaction, // this query gets executed inside that transaction. It's OK, // except if the transaction is in abort-only state and the // backed refuses to process new queries. Hopefully not a problem // in practise. ResultSet rs = stmt.executeQuery("SELECT gid FROM pg_prepared_xacts"); LinkedList l = new LinkedList(); while (rs.next()) { Xid recoveredXid = RecoveredXid.stringToXid(rs.getString(1)); if (recoveredXid != null) l.add(recoveredXid); } rs.close(); return (Xid[]) l.toArray(new Xid[l.size()]); } finally { stmt.close(); } } catch (SQLException ex) { throw new PGXAException(GT.tr("Error during recover"), ex, XAException.XAER_RMERR); } } }
public static synchronized Connection getConnection() { clearClosedConnection(); while (m_notUsedConnection.size() > 0) { try { ConnectionWrapper wrapper = (ConnectionWrapper) m_notUsedConnection.removeFirst(); if (wrapper.connection.isClosed()) { continue; } m_usedUsedConnection.add(wrapper); if (DEBUG) { wrapper.debugInfo = new Throwable("Connection initial statement"); } return wrapper.connection; } catch (Exception e) { } } int newCount = getIncreasingConnectionCount(); LinkedList list = new LinkedList(); ConnectionWrapper wrapper = null; for (int i = 0; i < newCount; i++) { wrapper = getNewConnection(); if (wrapper != null) { list.add(wrapper); } } if (list.size() == 0) { return null; } wrapper = (ConnectionWrapper) list.removeFirst(); m_usedUsedConnection.add(wrapper); m_notUsedConnection.addAll(list); list.clear(); return wrapper.connection; }
// @SuppressWarnings("unchecked") public void checkForOutgoingMessages() throws Exception { Statement sqlCmd1, sqlCmd2; ResultSet rs; LinkedList messageList = new LinkedList(); COutgoingMessage message; int batchLimit; batchLimit = settings.getPhoneSettings().getBatchOutgoing(); sqlCmd1 = connection.createStatement(ResultSet.TYPE_SCROLL_INSENSITIVE, ResultSet.CONCUR_READ_ONLY); rs = sqlCmd1.executeQuery("select count(*) as cnt from sms_out where dispatch_date is null"); rs.next(); if (rs.getInt("cnt") != 0) { rs.close(); sqlCmd2 = connection.createStatement(); rs = sqlCmd1.executeQuery("select * from sms_out where dispatch_date is null"); while (rs.next()) { if (messageList.size() > batchLimit) break; message = new COutgoingMessage(rs.getString("recipient").trim(), rs.getString("text").trim()); message.setId("" + rs.getInt("id")); message.setFlashSms(rs.getInt("flash_sms") == 1); message.setStatusReport(rs.getInt("status_report") == 1); message.setSourcePort(rs.getInt("src_port")); message.setDestinationPort(rs.getInt("dst_port")); message.setValidityPeriod(rs.getInt("validity_period")); if (settings.getPhoneSettings().getMessageEncoding().equalsIgnoreCase("7bit")) message.setMessageEncoding(CMessage.MessageEncoding.Enc7Bit); else if (settings.getPhoneSettings().getMessageEncoding().equalsIgnoreCase("8bit")) message.setMessageEncoding(CMessage.MessageEncoding.Enc8Bit); else if (settings.getPhoneSettings().getMessageEncoding().equalsIgnoreCase("unicode")) message.setMessageEncoding(CMessage.MessageEncoding.EncUcs2); else message.setMessageEncoding(CMessage.MessageEncoding.Enc7Bit); messageList.add(message); } rs.close(); mainThread.service.sendMessage(messageList); for (int i = 0; i < messageList.size(); i++) { message = (COutgoingMessage) messageList.get(i); if (message.getDispatchDate() != null) { settings.getGeneralSettings().rawOutLog(message); if (mainThread.mainWindow != null) { mainThread.mainWindow.setOutTo(message.getRecipient()); mainThread.mainWindow.setOutDate(message.getDispatchDate().toString()); mainThread.mainWindow.setOutText(message.getText()); } else { System.out.println(CConstants.TEXT_OUTMSG); System.out.println("\t" + CConstants.LABEL_OUTGOING_TO + message.getRecipient()); System.out.println("\t" + CConstants.LABEL_OUTGOING_DATE + message.getDate()); System.out.println("\t" + CConstants.LABEL_OUTGOING_TEXT + message.getText()); } sqlCmd2.executeUpdate( "update sms_out set dispatch_date = " + escapeDate(message.getDispatchDate(), true) + " where id = " + message.getId()); } } sqlCmd2.close(); connection.commit(); } else { rs.close(); connection.rollback(); } sqlCmd1.close(); }
private void initPK(ConnectionProvider cp, String shortTableName) throws SQLException, DBException { ResultSet rs; IndexElement[] iearr = getIndexes(); if (iearr != null) { for (int i = 0; i < iearr.length; i++) if (iearr[i].isUnique()) { UniqueKeyElementImpl ukei = new UniqueKeyElementImpl( iearr[i].getName().getName(), false); // false = not primary key (primary flag is setted later) UniqueKeyElement uke = new UniqueKeyElement(ukei, (TableElement) element, iearr[i]); uke.setColumns(iearr[i].getColumns()); changeKeys(new UniqueKeyElement[] {uke}, DBElement.Impl.ADD); } UniqueKeyElement[] ukes = ((TableElement) element).getUniqueKeys(); rs = cp.getDatabaseMetaData() .getPrimaryKeys(cp.getConnection().getCatalog(), cp.getSchema(), shortTableName); TreeMap cols = new TreeMap(); Object keySeq; String colName; if (rs != null) { HashMap rset = new HashMap(); while (rs.next()) { keySeq = rs.getObject("KEY_SEQ"); // NOI18N colName = rs.getString("COLUMN_NAME").trim(); // NOI18N cols.put(keySeq, colName); // NOI18N } rs.close(); } boolean primary = false; if (cols != null && cols.size() > 0) primary = true; if (primary) { if (ukes == null || ukes.length == 0) { // issue 56492: no index defined for the primary key // generate a UniqueKeyElement and an IndexElement for it String indexName = "primary_key_index"; // NOI18N int i = 1; while (((TableElement) element).getIndex(DBIdentifier.create(indexName)) != null) { indexName = indexName + i; i++; } LinkedList idxs = new LinkedList(); for (Iterator it = cols.values().iterator(); it.hasNext(); ) { // non-unique = false, thus the index is unique -- see initIndexes() idxs.add(indexName + "." + it.next() + ".false"); // NOI18N } IndexElementImpl iei = new IndexElementImpl(this, indexName, true); IndexElement ie = new IndexElement(iei, (TableElement) element); iei.initColumns(idxs); changeIndexes(new IndexElement[] {ie}, DBElement.Impl.ADD); UniqueKeyElementImpl ukei = new UniqueKeyElementImpl(ie.getName().getName(), true); UniqueKeyElement uke = new UniqueKeyElement(ukei, (TableElement) element, ie); uke.setColumns(ie.getColumns()); changeKeys(new UniqueKeyElement[] {uke}, DBElement.Impl.ADD); } else if (ukes.length == 1) ukes[0].setPrimaryKey(primary); else { ColumnElement[] ces; Object[] o = cols.values().toArray(); boolean equals; for (int i = 0; i < ukes.length; i++) { ces = ukes[i].getColumns(); if (ces.length != o.length) continue; else { equals = true; for (int j = 0; j < ces.length; j++) if (!o[j].toString().equals(ces[j].getName().getName())) { equals = false; break; } if (equals) { ukes[i].setPrimaryKey(primary); break; } } } } } } }
protected void initIndexes(ConnectionProvider cp, String tbl) { if (cp != null) try { boolean unique; DatabaseMetaData dmd = cp.getDatabaseMetaData(); String shortTableName; if (tbl == null) shortTableName = getName().getName(); else shortTableName = tbl; ResultSet rs; // rs = dmd.getIndexInfo(cp.getConnection().getCatalog(), // dmd.getUserName().trim(), shortTableName, false, true); rs = dmd.getIndexInfo( cp.getConnection().getCatalog(), cp.getSchema(), shortTableName, false, true); String name, columnName; boolean unq; LinkedList idxs = new LinkedList(); if (rs != null) { HashMap rset = new HashMap(); String uniqueStr; while (rs.next()) { name = rs.getString("INDEX_NAME"); // NOI18N columnName = rs.getString("COLUMN_NAME"); // NOI18N if (columnName != null) columnName = columnName.trim(); unq = rs.getBoolean("NON_UNIQUE"); // NOI18N // hack for PostgreSQL bug 3480: the driver returns quotes around quoted column names if (columnName != null && columnName.length() >= 2 && columnName.startsWith("\"") && columnName.endsWith("\"")) { // NOI18N columnName = columnName.substring(1, columnName.length() - 1); } if (name == null) continue; else name = name.trim(); if (unq) idxs.add(name + "." + columnName + ".false"); // NOI18N else idxs.add(name + "." + columnName + ".true"); // NOI18N } rs.close(); } String info; int start, end; for (int i = 0; i < idxs.size(); i++) { info = idxs.get(i).toString(); start = info.indexOf('.'); // NOI18N end = info.lastIndexOf('.'); // NOI18N name = info.substring(0, start); if ((info.substring(end + 1)).equals("true")) // NOI18N unique = true; else unique = false; if (indexes.find(DBIdentifier.create(name)) != null) continue; IndexElementImpl iei = new IndexElementImpl(this, name, unique); IndexElement[] ie = {new IndexElement(iei, (TableElement) element)}; iei.initColumns(idxs); changeIndexes(ie, DBElement.Impl.ADD); } } catch (Exception exc) { if (Boolean.getBoolean("netbeans.debug.exceptions")) // NOI18N exc.printStackTrace(); } }
public static void main(String[] args) { Statement statement = null; Connection conn = null; ResultSet rsMin = null; PreparedStatement psInsert = null; LinkedList<Statement> allStatements = new LinkedList<Statement>(); try { // Instantiate the driver Class.forName(JDBC_DRIVER); } catch (ClassNotFoundException cnfe) { System.out.println( "Can't instantiate driver class; check you have drives and classpath configured correctly?"); cnfe.printStackTrace(); System.exit(-1); // No driver? Need to fix before anything else will work. So quit the program } try { conn = DriverManager.getConnection(DB_CONNECTION_URL, USER, PASSWORD); statement = conn.createStatement(); allStatements.add(statement); System.out.println("Average Weather Database Program"); // Create a table in the database. Stores today's date, and the min and max temperatures // recorded. String createTableSQL = "CREATE TABLE temp (day date, mintemp double, maxtemp double)"; String deleteTableSQL = "DROP TABLE temp"; try { statement.executeUpdate(createTableSQL); System.out.println("Created temp table"); } catch (SQLException sqle) { // Seems the table already exists. Delete it and recreate it if (sqle.getSQLState() .startsWith("42")) { // Error code for table already existing start with XO System.out.println("Temp table appears to exist already, delete and recreate"); statement.executeUpdate(deleteTableSQL); statement.executeUpdate(createTableSQL); } else { // Something else went wrong. If we can't create the table, no point attempting // to run the rest of the code. Throw the exception again to be handled at the end of the // program. System.out.println("Got stuck in catch else " + sqle.getSQLState() + " is sql state"); throw sqle; } } // Add some test data String prepStatInsert = "INSERT INTO temp VALUES ( ?, ?, ? )"; psInsert = conn.prepareStatement(prepStatInsert); allStatements.add(psInsert); psInsert.setDate(1, Date.valueOf("2014-04-01")); psInsert.setDouble(2, 44.2); psInsert.setDouble(3, 58.7); psInsert.executeUpdate(); psInsert.setDate(1, Date.valueOf("2014-04-02")); psInsert.setDouble(2, 34.6); psInsert.setDouble(3, 55.1); psInsert.executeUpdate(); psInsert.setDate(1, Date.valueOf("2014-04-03")); psInsert.setDouble(2, 43.9); psInsert.setNull( 3, Types.DOUBLE); // Forgot to record the max temperature for this date so set it to null. psInsert.executeUpdate(); psInsert.setDate(1, Date.valueOf("2014-04-04")); psInsert.setDouble(2, 43.8); psInsert.setDouble(3, 47.2); psInsert.executeUpdate(); System.out.println("Added test data to database"); // Let's calculate the average minimum and average maximum temperature for all the days. // Add up all the maximum temperatures and divide by number of days to get average max // temperature. // Add up all the minimum temperatures and divide by number of days to get average min // temperature. double averageMaxTemp = 0; double averageMinTemp = 0; String getAvgsSQL = "SELECT AVG(mintemp) AS rsMin, AVG(maxtemp) AS rsMax FROM temp"; rsMin = statement.executeQuery(getAvgsSQL); while (rsMin.next()) { // there is only one averageMinTemp = rsMin.getDouble("rsMin"); System.out.println("Average min is " + averageMinTemp); averageMaxTemp = rsMin.getDouble("rsMax"); System.out.println("Average max is " + averageMaxTemp); } System.out.println( "Average maximum temperature = " + averageMaxTemp + " , average minimum temperature = " + averageMinTemp); } catch (SQLException se) { se.printStackTrace(); } catch (Exception e) { e.printStackTrace(); } finally { // A finally block runs whether an exception is thrown or not. Close resources and tidy up // whether this code worked or not. try { if (rsMin != null) { rsMin.close(); // Close result set System.out.println("ResultSet closed"); } } catch (SQLException se) { se.printStackTrace(); } // Close all of the statements. Stored a reference to each statement in allStatements so we // can loop over all of them and close them all. for (Statement s : allStatements) { if (s != null) { try { s.close(); System.out.println("Statement closed"); } catch (SQLException se) { System.out.println("Error closing statement"); se.printStackTrace(); } } } try { if (conn != null) { conn.close(); // Close connection to database System.out.println("Database connection closed"); } } catch (SQLException se) { se.printStackTrace(); } } System.out.println("End of program"); }