public String toString() {
String s = "[" + helper_type + ";";
for (Enumeration e = seq.elements(); e.hasMoreElements(); ) {
try {
Class c = (Class) e.nextElement();
s += c.getName() + ",";
} catch (NoSuchElementException ee) {
s += "???" + ",";
}
}
return s + "]";
}
public static PiHelper load_pi_helper(
PiHelper pi_helper_cache, ConditionalDistribution pxu, Distribution[] pi_messages)
throws Exception {
if (pi_messages.length == 0) return new TrivialPiHelper();
Vector seq = new Vector();
seq.addElement(pxu.getClass());
for (int i = 0; i < pi_messages.length; i++) seq.addElement(pi_messages[i].getClass());
if (pi_helper_cache != null
&& MatchClassPattern.matches(pi_helper_cache.description(), seq, new int[1], new int[1]))
return pi_helper_cache;
Class c = find_helper_class(seq, "pi");
return (PiHelper) c.newInstance();
}
private Connection getSYBASEConnection() {
try {
Class.forName("com.sybase.jdbc2.jdbc.SybDriver");
return DriverManager.getConnection("jdbc:sybase:Tds:fe-test:2048/feDB", "sa", null);
} catch (Exception e) {
e.printStackTrace();
return null;
}
}
private Connection getSOLIDConnection() {
try {
Class.forName("solid.jdbc.SolidDriver");
return DriverManager.getConnection("jdbc:solid://nms-clienttest1:1313/dba/dba", "dba", "dba");
} catch (Exception e) {
e.printStackTrace();
return null;
}
}
private Connection getTIMESTENConnection() {
try {
Class.forName("com.timesten.jdbc.TimesTenDriver");
return DriverManager.getConnection("jdbc:timesten:direct:WebNmsDB", "root", null);
} catch (Exception e) {
e.printStackTrace();
return null;
}
}
private Connection getMYSQLConnection() {
try {
Class.forName("org.gjt.mm.mysql.Driver");
return DriverManager.getConnection("jdbc:mysql://localhost/WebNmsDB", "root", null);
} catch (Exception e) {
e.printStackTrace();
return null;
}
}
public Connection createConnection() throws Exception {
Connection con;
try {
Class.forName(dbClass);
con = DriverManager.getConnection(dbUrl, dbUser, dbPassword);
} catch (Exception e) {
e.printStackTrace();
throw e;
}
return con;
}
private Connection getORACLEConnection() {
try {
Class.forName("oracle.jdbc.driver.OracleDriver");
return DriverManager.getConnection(
"jdbc:oracle:thin:@kernel-win:1521:oracle", "BFW3", "BFW3");
} catch (Exception e) {
e.printStackTrace();
return null;
}
}
public static Object invoke_description(Class c) {
try {
Field f = c.getField("description_array");
return f.get(null);
} catch (NoSuchFieldException e) {
} // eat the exception; apparently c is not a helper
catch (Exception e) {
} // HMM, SHOULD WE TRY HARDER TO FIGURE OUT WHAT'S GOING ON HERE ???
return null;
}
/**
* Broadcasts a Cytoscape movie style tuple which assigns the value of a single attribute to the
* nodes listed in allNames. [is this correct? -jcb]
*
* @param title
* @param attributeName
* @param allNames
* @param allValues
*/
public void createAndBroadcastGaggleTuple(
String title, String attributeName, String[] allNames, String[] allValues) {
Class valueClass = getValueType(allValues);
GaggleTuple gaggleTuple = new GaggleTuple();
gaggleTuple.setName(title);
Tuple metadata = new Tuple();
metadata.addSingle(new Single(title));
gaggleTuple.setMetadata(metadata);
Tuple dataTuple = new Tuple();
dataTuple.setName(title);
gaggleTuple.setSpecies(defaultSpecies);
for (int i = 0; i < allNames.length; i++) {
Serializable value;
if (valueClass.equals(Integer.class)) {
value = Integer.valueOf(allValues[i]);
} else if (valueClass.equals(Double.class)) {
value = Double.valueOf(allValues[i]);
} else { // string
String s = allValues[i];
if (s.startsWith("|") && s.endsWith("|")) {
value = s.substring(1, s.length() - 1);
} else {
value = allValues[i];
}
}
Tuple row = new Tuple();
row.addSingle(new Single(allNames[i]));
row.addSingle(new Single(attributeName));
row.addSingle(new Single(value));
dataTuple.addSingle(new Single(row));
}
gaggleTuple.setData(dataTuple);
broadcastGaggleTuple(gaggleTuple);
}
static {
// FIXME: RMIServerImpl_Stub is generated at build time
// after jconsole is built. We need to investigate if
// the Makefile can be fixed to build jconsole in the
// right order. As a workaround for now, we dynamically
// load RMIServerImpl_Stub class instead of statically
// referencing it.
Class<? extends Remote> serverStubClass = null;
try {
serverStubClass = Class.forName(rmiServerImplStubClassName).asSubclass(Remote.class);
} catch (ClassNotFoundException e) {
// should never reach here
throw (InternalError) new InternalError(e.getMessage()).initCause(e);
}
rmiServerImplStubClass = serverStubClass;
}
private static void checkStub(Remote stub, Class<? extends Remote> stubClass) {
// Check remote stub is from the expected class.
//
if (stub.getClass() != stubClass) {
if (!Proxy.isProxyClass(stub.getClass())) {
throw new SecurityException("Expecting a " + stubClass.getName() + " stub!");
} else {
InvocationHandler handler = Proxy.getInvocationHandler(stub);
if (handler.getClass() != RemoteObjectInvocationHandler.class) {
throw new SecurityException(
"Expecting a dynamic proxy instance with a "
+ RemoteObjectInvocationHandler.class.getName()
+ " invocation handler!");
} else {
stub = (Remote) handler;
}
}
}
// Check RemoteRef in stub is from the expected class
// "sun.rmi.server.UnicastRef2".
//
RemoteRef ref = ((RemoteObject) stub).getRef();
if (ref.getClass() != UnicastRef2.class) {
throw new SecurityException(
"Expecting a " + UnicastRef2.class.getName() + " remote reference in stub!");
}
// Check RMIClientSocketFactory in stub is from the expected class
// "javax.rmi.ssl.SslRMIClientSocketFactory".
//
LiveRef liveRef = ((UnicastRef2) ref).getLiveRef();
RMIClientSocketFactory csf = liveRef.getClientSocketFactory();
if (csf == null || csf.getClass() != SslRMIClientSocketFactory.class) {
throw new SecurityException(
"Expecting a "
+ SslRMIClientSocketFactory.class.getName()
+ " RMI client socket factory in stub!");
}
}
/**
* Contact a belief network context, get the helper list, and search the list to see if there's a
* helper which matches the type sequence specified. If there's more than one helper which
* matches, find the ``best fit.''
*
* <p>The class and count scores of the best-fitting helper class are written into
* <tt>max_class_score[0]</tt> and <tt>max_count_score[0]</tt>, respectively.
*/
public static Class find_helper_class0(
Vector seq, String helper_type, int[] max_class_score, int[] max_count_score)
throws ClassNotFoundException {
long t0 = System.currentTimeMillis();
if (bnc != null) // make sure the reference is still alive
try {
bnc.get_name();
} catch (RemoteException e) {
bnc = null;
}
if (bnc == null) // need to locate a context
{
String cb = System.getProperty("java.rmi.server.codebase", "http://localhost");
long tt0 = System.currentTimeMillis();
try {
bnc = BeliefNetworkContext.locate_context(new URL(cb).getHost());
} catch (Exception e) {
throw new ClassNotFoundException("nested: " + e);
}
}
String[] helperlist;
try {
helperlist = bnc.get_helper_names(helper_type);
} catch (RemoteException e) {
throw new ClassNotFoundException("bnc.get_helper_names failed");
}
int[] class_score1 = new int[1], count_score1 = new int[1];
max_class_score[0] = -1;
max_count_score[0] = -1;
Class cmax_score = null;
for (int i = 0; i < helperlist.length; i++) {
try {
Class c = RMIClassLoader.loadClass(helperlist[i]);
SeqTriple[] sm = (SeqTriple[]) invoke_description(c);
if (sm == null) continue; // apparently not a helper class
if (MatchClassPattern.matches(sm, seq, class_score1, count_score1)) {
if (class_score1[0] > max_class_score[0]
|| (class_score1[0] == max_class_score[0] && count_score1[0] > max_count_score[0])) {
cmax_score = c;
max_class_score[0] = class_score1[0];
max_count_score[0] = count_score1[0];
}
}
} catch (Exception e2) {
System.err.println("PiHelperLoader: attempt to load " + helperlist[i] + " failed; " + e2);
}
}
if (cmax_score == null) {
System.err.println("find_helper_class0: failed; helper list:");
for (int i = 0; i < helperlist.length; i++) System.err.println("\t" + helperlist[i]);
String s = "";
for (Enumeration e = seq.elements(); e.hasMoreElements(); ) {
try {
Class c = (Class) e.nextElement();
s += c.getName() + ",";
} catch (NoSuchElementException ee) {
s += "???" + ",";
}
}
throw new ClassNotFoundException("no " + helper_type + " helper for sequence [" + s + "]");
}
// FOR NOW IGNORE THE POSSIBILITY OF TWO OR MORE MATCHES !!!
return cmax_score;
}
/**
* This method returns a <tt>Class</tt> for a helper which can handle the list of distributions
* specified by <tt>seq1</tt>. We maintain a cache of recently-loaded helpers, so check the cache
* before going to the trouble of searching for a helper. The cache is blown away every
* <tt>HELPER_CACHE_REFRESH</tt> seconds.
*
* <p>If we can't find a helper in the cache, we must search through the list of available helpers
* to find an appropriate one. First try to find helper using class sequence as specified by
* <tt>seq</tt>. Whether or not that succeeds, promote any <tt>Gaussian</tt> in the sequence to
* <tt>MixGaussians</tt>, and try again. If we get a better match on the second try, return the
* helper thus found.
*/
public static Class find_helper_class(Vector seq1, String helper_type)
throws ClassNotFoundException {
// Let's see if an appropriate helper is in the cache.
// If the cache is too old, empty it and search for the helper anew.
if (System.currentTimeMillis() - cache_timestamp > HELPER_CACHE_REFRESH) {
helper_cache = new Hashtable();
cache_timestamp = System.currentTimeMillis();
// Go on and search for appropriate helper.
} else {
HelperCacheKey key = new HelperCacheKey(helper_type, seq1);
Class helper_class = (Class) helper_cache.get(key);
if (helper_class != null) {
if (Global.debug > -1)
System.err.println(
"PiHelperLoader.find_helper_class: found helper class: "
+ helper_class
+ "; no need to search.");
return helper_class;
}
// else no luck; we have to search for helper.
}
// Well, we didn't find a helper in the cache, so let's go to work.
if (Global.debug > -1)
System.err.println(
"PiHelperLoader.find_helper_class: DID NOT FIND HELPER CLASS; NOW SEARCH.");
Class c1 = null, c2 = null;
ClassNotFoundException cnfe1 = null, cnfe2 = null;
int[] class_score1 = new int[1], count_score1 = new int[1];
int[] class_score2 = new int[1], count_score2 = new int[1];
try {
c1 = find_helper_class1(seq1, helper_type, class_score1, count_score1);
} catch (ClassNotFoundException e) {
cnfe1 = e;
} // hang on, we may need to re-throw later.
Class gaussian_class = Class.forName("riso.distributions.Gaussian");
MixGaussians mog = new MixGaussians(1, 1);
Vector seq2 = new Vector(seq1.size());
for (int i = 0; i < seq1.size(); i++)
if (gaussian_class.isAssignableFrom((Class) seq1.elementAt(i)))
seq2.addElement(mog.getClass());
else seq2.addElement(seq1.elementAt(i));
try {
c2 = find_helper_class1(seq2, helper_type, class_score2, count_score2);
} catch (ClassNotFoundException e) {
cnfe2 = e;
}
if (cnfe1 == null && cnfe2 == null) {
// Both matched; see which one fits better.
// Break ties in favor of the helper for non-promoted messages.
if (class_score1[0] >= class_score2[0]
|| (class_score1[0] == class_score2[0] && count_score1[0] >= count_score2[0])) {
if (Global.debug > 1)
System.err.println(
"\taccept helper " + c1 + " for non-promoted classes instead of " + c2);
if (Global.debug > 1)
System.err.println(
"\t\t"
+ class_score1[0]
+ ", "
+ class_score2[0]
+ "; "
+ count_score1[0]
+ ", "
+ count_score2[0]);
helper_cache.put(new HelperCacheKey(helper_type, seq1), c1);
return c1;
} else {
if (Global.debug > 1)
System.err.println("\taccept helper " + c2 + " for promoted classes instead of " + c1);
if (Global.debug > 1)
System.err.println(
"\t\t"
+ class_score1[0]
+ ", "
+ class_score2[0]
+ "; "
+ count_score1[0]
+ ", "
+ count_score2[0]);
helper_cache.put(new HelperCacheKey(helper_type, seq1), c2);
return c2;
}
} else if (cnfe1 == null && cnfe2 != null) {
// Only the first try matched, return it.
helper_cache.put(new HelperCacheKey(helper_type, seq1), c1);
return c1;
} else if (cnfe1 != null && cnfe2 == null) {
// Only the second try matched, return it.
helper_cache.put(new HelperCacheKey(helper_type, seq1), c2);
return c2;
} else {
// Neither try matched. Re-throw the exception generated by the first try.
throw cnfe1;
}
}