/**
* This is the new write method that uses XML methods to generate an XML file.
*
* @param location The location where the new file should be stored.
* @param file The file that was being used to create this table.
* @param tableID The ID of the table.
* @param semanticFramework The semantic framework object. This contains get methods that are
* required for the output File.
* @throws IOException If the given location doesn't exist.
*/
private void write2(String location, File file, int tableID, SemanticFramework semanticFramework)
throws IOException {
try {
DocumentBuilderFactory docFactory = DocumentBuilderFactory.newInstance();
DocumentBuilder docBuilder = docFactory.newDocumentBuilder();
Document doc = docBuilder.newDocument();
org.w3c.dom.Element rootElement = doc.createElement("TEAFile");
doc.appendChild(rootElement);
// provenance:
org.w3c.dom.Element provenance = doc.createElement("provenance");
rootElement.appendChild(provenance);
org.w3c.dom.Element detectionID = doc.createElement("DetectionID");
detectionID.appendChild(doc.createTextNode(tableID + ""));
provenance.appendChild(detectionID);
org.w3c.dom.Element fromFile = doc.createElement("fromFile");
fromFile.appendChild(doc.createTextNode(file.getName()));
provenance.appendChild(fromFile);
org.w3c.dom.Element fromPath = doc.createElement("fromPath");
fromPath.appendChild(doc.createTextNode(file.getAbsolutePath()));
provenance.appendChild(fromPath);
org.w3c.dom.Element fromPage = doc.createElement("fromPage");
fromPage.appendChild(doc.createTextNode(Integer.toString(pageNumber)));
provenance.appendChild(fromPage);
org.w3c.dom.Element horizontalThresholdModifier =
doc.createElement("horizontalThresholdModifier");
horizontalThresholdModifier.appendChild(
doc.createTextNode(this.horizontalThresholdModifier + ""));
provenance.appendChild(horizontalThresholdModifier);
org.w3c.dom.Element verticalThresholdModifier =
doc.createElement("horizontalThresholdModifier");
verticalThresholdModifier.appendChild(
doc.createTextNode(this.verticalThresholdModifier + ""));
provenance.appendChild(verticalThresholdModifier);
// Results:
org.w3c.dom.Element results = doc.createElement("results");
rootElement.appendChild(results);
org.w3c.dom.Element minX1 = doc.createElement("TableBoundaryX1");
minX1.appendChild(doc.createTextNode(this.minX1 + ""));
results.appendChild(minX1);
org.w3c.dom.Element maxX2 = doc.createElement("TableBoundaryX2");
maxX2.appendChild(doc.createTextNode(this.maxX2 + ""));
results.appendChild(maxX2);
org.w3c.dom.Element minY1 = doc.createElement("TableBoundaryY1");
minY1.appendChild(doc.createTextNode(this.minY1 + ""));
results.appendChild(minY1);
org.w3c.dom.Element maxY2 = doc.createElement("TableBoundaryY2");
maxY2.appendChild(doc.createTextNode(this.maxY2 + ""));
results.appendChild(maxY2);
org.w3c.dom.Element title1 = doc.createElement("title1");
title1.appendChild(doc.createTextNode(name));
results.appendChild(title1);
org.w3c.dom.Element title2 = doc.createElement("title2");
title2.appendChild(doc.createTextNode(titleAndHeaders.toString()));
results.appendChild(title2);
org.w3c.dom.Element columns = doc.createElement("columns");
results.appendChild(columns);
for (Column2 columnContent : dataInColumns) {
org.w3c.dom.Element column = doc.createElement("column");
column.appendChild(doc.createTextNode(columnContent.toString().replace("�", "")));
columns.appendChild(column);
}
org.w3c.dom.Element lines = doc.createElement("lines");
results.appendChild(lines);
ArrayList<ArrayList<Cell>> table = recreateTableLines(semanticFramework);
for (ArrayList<Cell> line : table) {
org.w3c.dom.Element XMLLine = doc.createElement("line");
XMLLine.appendChild(doc.createTextNode(line.toString().replace("�", "")));
lines.appendChild(XMLLine);
}
/*System.out.println("table:" + table);
for(Line line : data){
if(line.getHighestY2()<=this.maxY2&&line.getLowestY1()>=this.minY1&&line.getClusterSize()>1){
org.w3c.dom.Element XMLLine = doc.createElement("line");
XMLLine.appendChild(doc.createTextNode(line.toString().replace("�", "")));
lines.appendChild(XMLLine);
}
else{
System.out.println("NO GOOD: " + line);
}
}
*/
if (rowSpanners.size() > 0) {
org.w3c.dom.Element rowSpanners = doc.createElement("rowSpanners");
results.appendChild(rowSpanners);
for (Line line : this.rowSpanners) {
org.w3c.dom.Element rowSpanner = doc.createElement("rowSpanner");
rowSpanner.appendChild(doc.createTextNode(line.toString()));
rowSpanners.appendChild(rowSpanner);
}
}
// Semantics:
org.w3c.dom.Element semantics = doc.createElement("tableSemantics");
rootElement.appendChild(semantics);
org.w3c.dom.Element title = doc.createElement("title");
title.appendChild(doc.createTextNode(semanticFramework.getTitle().toString()));
semantics.appendChild(title);
org.w3c.dom.Element titleConfidence = doc.createElement("titleConfidence");
Double semanticFrameworkDouble = semanticFramework.getTitleConfidence();
titleConfidence.appendChild(doc.createTextNode(semanticFrameworkDouble.toString()));
semantics.appendChild(titleConfidence);
if (!semanticFramework.getRowSpanners().isEmpty()) {
org.w3c.dom.Element rowSpanners = doc.createElement("subHeaders");
rowSpanners.appendChild(doc.createTextNode(semanticFramework.getRowSpanners().toString()));
semantics.appendChild(rowSpanners);
org.w3c.dom.Element IdentifiersConfidenceAlignment =
doc.createElement("subHeadersConfidenceAlignment");
IdentifiersConfidenceAlignment.appendChild(
doc.createTextNode(semanticFramework.getIdentifiersConfidenceAlignment().toString()));
semantics.appendChild(IdentifiersConfidenceAlignment);
org.w3c.dom.Element getIdentifiersConfidenceColumnsSpanned =
doc.createElement("subHeadersConfidenceColumnsSpanned");
getIdentifiersConfidenceColumnsSpanned.appendChild(
doc.createTextNode(
semanticFramework.getIdentifiersConfidenceColumnsSpanned().toString()));
semantics.appendChild(getIdentifiersConfidenceColumnsSpanned);
org.w3c.dom.Element IdentifiersConfidenceLineDistance =
doc.createElement("subHeadersConfidenceLineDistance");
IdentifiersConfidenceLineDistance.appendChild(
doc.createTextNode(
semanticFramework.getIdentifiersConfidenceLineDistance().toString()));
semantics.appendChild(IdentifiersConfidenceLineDistance);
}
if (!semanticFramework.getValidatedRowSpanners().isEmpty()) {
org.w3c.dom.Element rowSpanners = doc.createElement("rowSpanners");
rowSpanners.appendChild(
doc.createTextNode(semanticFramework.getValidatedRowSpanners().toString()));
semantics.appendChild(rowSpanners);
org.w3c.dom.Element rowSpannersConfidenceAlignment =
doc.createElement("rowSpannersConfidenceAlignment");
rowSpannersConfidenceAlignment.appendChild(
doc.createTextNode(semanticFramework.getRowSpannersConfidenceAlignment().toString()));
semantics.appendChild(rowSpannersConfidenceAlignment);
org.w3c.dom.Element rowSpannersConfidenceColumnsSpanned =
doc.createElement("rowSpannersConfidenceColumnsSpanned");
rowSpannersConfidenceColumnsSpanned.appendChild(
doc.createTextNode(
semanticFramework.getRowSpannersConfidenceColumnsSpanned().toString()));
semantics.appendChild(rowSpannersConfidenceColumnsSpanned);
org.w3c.dom.Element rowSpannersConfidenceLineDistance =
doc.createElement("rowSpannersConfidenceLineDistance");
rowSpannersConfidenceLineDistance.appendChild(
doc.createTextNode(
semanticFramework.getRowSpannersConfidenceLineDistance().toString()));
semantics.appendChild(rowSpannersConfidenceLineDistance);
}
org.w3c.dom.Element headers = doc.createElement("headers");
headers.appendChild(doc.createTextNode(semanticFramework.getHeaders().toString()));
semantics.appendChild(headers);
org.w3c.dom.Element headersConfidence = doc.createElement("headersConfidence");
headersConfidence.appendChild(
doc.createTextNode(semanticFramework.getHeaderConfidence().toString()));
semantics.appendChild(headersConfidence);
// validation:
org.w3c.dom.Element validation = doc.createElement("validation");
rootElement.appendChild(validation);
org.w3c.dom.Element clusterCertainty = doc.createElement("columnConfidence");
clusterCertainty.appendChild(
doc.createTextNode(this.validation.getClusterCertainty().toString()));
validation.appendChild(clusterCertainty);
org.w3c.dom.Element mostFrequentNumberOfClusters =
doc.createElement("mostFrequentNumberOfClusters");
mostFrequentNumberOfClusters.appendChild(
doc.createTextNode(this.validation.getMostFrequentNumberOfClusters() + ""));
validation.appendChild(mostFrequentNumberOfClusters);
org.w3c.dom.Element highestAmountOfClusters = doc.createElement("highestAmountOfClusters");
highestAmountOfClusters.appendChild(
doc.createTextNode(this.validation.getHighestAmountOfClusters() + ""));
validation.appendChild(highestAmountOfClusters);
org.w3c.dom.Element highestAmountOfClustersOccurrences =
doc.createElement("highestAmountOfClustersOccurrences");
highestAmountOfClustersOccurrences.appendChild(
doc.createTextNode(this.validation.getHighestAmountOfClustersOccurrences() + ""));
validation.appendChild(highestAmountOfClustersOccurrences);
org.w3c.dom.Element clusterThreshold = doc.createElement("clusterThreshold");
clusterThreshold.appendChild(doc.createTextNode(this.validation.getLineThreshold() + ""));
validation.appendChild(clusterThreshold);
org.w3c.dom.Element cellsWithMissingDataAdded =
doc.createElement("cellsWithMissingDataAdded");
cellsWithMissingDataAdded.appendChild(
doc.createTextNode(this.validation.getCellsWithMissingDataAdded() + ""));
validation.appendChild(cellsWithMissingDataAdded);
if (this.validation.getCellsWithMissingDataAdded() > 0) {
org.w3c.dom.Element cellsWithMissingDataAddedScores =
doc.createElement("cellsWithMissingDataAddedScores");
cellsWithMissingDataAddedScores.appendChild(
doc.createTextNode(this.validation.getCellsWithMissingDataAddedObjects() + ""));
validation.appendChild(cellsWithMissingDataAddedScores);
}
org.w3c.dom.Element averageDistanceBetweenRows =
doc.createElement("averageDistanceBetweenRows");
averageDistanceBetweenRows.appendChild(
doc.createTextNode(this.validation.getAverageDistanceBetweenRows() + ""));
validation.appendChild(averageDistanceBetweenRows);
if (this.validation.getTitleConfidence().size() > 0) {
org.w3c.dom.Element TitleConfidence = doc.createElement("TitleConfidence");
TitleConfidence.appendChild(doc.createTextNode(this.validation.getTitleConfidence() + ""));
validation.appendChild(TitleConfidence);
}
org.w3c.dom.Element falsePositive = doc.createElement("falsePositive");
falsePositive.appendChild(doc.createTextNode(this.validation.getFalsePositive() + ""));
validation.appendChild(falsePositive);
TransformerFactory transformerFactory = TransformerFactory.newInstance();
Transformer transformer = transformerFactory.newTransformer();
DOMSource source = new DOMSource(doc);
LOGGER.info(
"Written file: "
+ location
+ "\\results\\"
+ file.getName().substring(0, file.getName().length() - 5)
+ "-"
+ tableID
+ ".xml");
File file2 =
new File(
location
+ "\\results\\"
+ file.getName().substring(0, file.getName().length() - 5)
+ "-"
+ tableID
+ ".xml");
Writer output = new BufferedWriter(new FileWriter(file2));
StreamResult result = new StreamResult(output);
// Output to console for testing
transformer.setOutputProperty(OutputKeys.INDENT, "yes");
transformer.setOutputProperty("{http://xml.apache.org/xslt}indent-amount", "2");
transformer.transform(source, result);
output.close();
System.out.println("File saved.");
} catch (ParserConfigurationException pce) {
pce.printStackTrace();
} catch (TransformerConfigurationException e) {
e.printStackTrace();
} catch (TransformerException e) {
e.printStackTrace();
}
}
// This method will try to recreate the original lines of the table using all the previous
// information about the table.
private ArrayList<ArrayList<Cell>> recreateTableLines(SemanticFramework semanticFramework) {
ArrayList<ArrayList<Cell>> table = new ArrayList<ArrayList<Cell>>();
for (Column2 column : dataInColumns) {
ArrayList<Cell> cells = column.getCellObjects();
table.add(cells);
}
int maxLength = Integer.MIN_VALUE;
for (ArrayList<Cell> column : table) {
int length = column.size();
if (length > maxLength) {
maxLength = length;
}
}
ArrayList<ArrayList<Cell>> newTable = new ArrayList<ArrayList<Cell>>();
ArrayList<Column2> incompleteRowColumns = new ArrayList<Column2>();
ArrayList<Cell> col = new ArrayList<Cell>();
int counter = 0;
while (counter < maxLength) {
ArrayList<Cell> line = new ArrayList<Cell>();
newTable.add(line);
counter++;
}
for (Column2 column : dataInColumns) {
if (column.getCellObjects().size() == maxLength) {
col = column.getCellObjects();
for (ArrayList<Cell> line : newTable) {
if (line.size() >= dataInColumns.indexOf(column)) {
line.add(dataInColumns.indexOf(column), col.get(newTable.indexOf(line)));
} else {
line.add(col.get(newTable.indexOf(line)));
}
}
} else {
incompleteRowColumns.add(column); // gonna be mapped
}
}
for (Column2 column : incompleteRowColumns) {
ArrayList<Cell> cells = column.getCellObjects();
for (Cell cellOfNewColumn : cells) {
System.out.println(cellOfNewColumn);
boolean breaking = false;
Cells:
for (ArrayList<Cell> line : newTable) {
for (Cell cell : line) {
if (cell.getY1()
>= cellOfNewColumn
.getY2()) { // ||(CommonMethods.calcDistance(cell.getY2(),
// cellOfNewColumn.getY1())>(averageLineDistance*verticalThresholdModifier))&&line.indexOf(cellOfNewColumn)!=0)
System.out.println(
newTable.indexOf(line)
+ " "
+ cell
+ " "
+ cellOfNewColumn
+ " "
+ newTable.size()
+ " "
+ dataInColumns.indexOf(column)
+ " "
+ line.size());
if (newTable.indexOf(line) != 0) {
System.out.println(
newTable.get(newTable.indexOf(line) - 1).size()
+ " "
+ dataInColumns.indexOf(column));
if (newTable.get(newTable.indexOf(line) - 1).size()
>= dataInColumns.indexOf(column)) {
newTable
.get(newTable.indexOf(line) - 1)
.add(dataInColumns.indexOf(column), cellOfNewColumn);
breaking = true;
break Cells;
} else {
newTable.get(newTable.indexOf(line) - 1).add(cellOfNewColumn);
breaking = true;
break Cells;
}
} else {
newTable.add(0, new ArrayList<Cell>());
newTable.get(0).add(cellOfNewColumn);
breaking = true;
break Cells;
}
}
}
}
if (!breaking) {
System.out.println("wasn't breaking. Now it is!");
System.out.println(
newTable.size()
+ " "
+ dataInColumns.indexOf(column)
+ " "
+ newTable.get(newTable.size() - 1).size());
System.out.println(dataInColumns.indexOf(column) + " " + (newTable.size() - 1));
if (dataInColumns.indexOf(column) <= newTable.get(newTable.size() - 1).size() - 1) {
newTable.get(newTable.size() - 1).add(dataInColumns.indexOf(column), cellOfNewColumn);
breaking = true;
} else {
newTable.get(newTable.size() - 1).add(cellOfNewColumn);
breaking = true;
}
}
}
}
// TODO: Implement missing data by looking at the touchcolumn of the rowspan and add all the
// columns from data in columns as empty cells.
double totalY2 = 0;
double averageY2;
for (Line rowSpanner : semanticFramework.getValidatedRowSpanners()) {
for (ArrayList<Cell> line : newTable) {
for (Cell cell : line) {
totalY2 = totalY2 + cell.getY2();
}
averageY2 = totalY2 / line.size();
if (rowSpanner.getAverageY1() < averageY2) {
newTable.add(newTable.indexOf(line), new ArrayList<Cell>());
newTable.get(newTable.indexOf(line) - 1).add(rowSpanner.getCellObject());
break;
}
}
}
for (Line subHeader : semanticFramework.getRowSpanners()) {
for (ArrayList<Cell> line : newTable) {
for (Cell cell : line) {
totalY2 = totalY2 + cell.getY2();
}
int firstMappedColumn = 0;
averageY2 = totalY2 / line.size();
if (subHeader.getAverageY1() < averageY2) {
newTable.add(newTable.indexOf(line), new ArrayList<Cell>());
for (Column2 column : dataInColumns) {
newTable.get(newTable.indexOf(line) - 1).add(new Cell());
if (column.touchesColumn(subHeader.getFirstX1(), subHeader.getLastX2())) {
firstMappedColumn = dataInColumns.indexOf(column);
}
}
newTable
.get(newTable.indexOf(line) - 1)
.set(firstMappedColumn, subHeader.getCellObject());
break;
}
}
}
System.out.println("NEWTABLE:");
System.out.println(newTable);
return newTable;
}