public long updatePart(String userId, long partId, PartData part) {
Entry existing = dao.get(partId);
authorization.expectWrite(userId, existing);
Entry entry = InfoToModelFactory.updateEntryField(part, existing);
entry.getLinkedEntries().clear();
if (part.getLinkedParts() != null && part.getLinkedParts().size() > 0) {
for (PartData data : part.getLinkedParts()) {
Entry linked = dao.getByPartNumber(data.getPartId());
// check permissions on link
if (!authorization.canRead(userId, linked)) {
continue;
}
if (!canLink(entry, linked)) continue;
entry.getLinkedEntries().add(linked);
}
}
entry.setModificationTime(Calendar.getInstance().getTime());
if (entry.getVisibility() == Visibility.DRAFT.getValue()) {
List<EntryField> invalidFields = EntryUtil.validates(part);
if (invalidFields.isEmpty()) entry.setVisibility(Visibility.OK.getValue());
}
entry = dao.update(entry);
// check pi email
String piEmail = entry.getPrincipalInvestigatorEmail();
if (StringUtils.isNotEmpty(piEmail)) {
Account pi = DAOFactory.getAccountDAO().getByEmail(piEmail);
if (pi != null) {
// add write permission for the PI (method also checks to see if permission already exists)
AccessPermission accessPermission = new AccessPermission();
accessPermission.setArticle(AccessPermission.Article.ACCOUNT);
accessPermission.setArticleId(pi.getId());
accessPermission.setType(AccessPermission.Type.WRITE_ENTRY);
accessPermission.setTypeId(entry.getId());
permissionsController.addPermission(userId, accessPermission);
}
}
return entry.getId();
}
/**
* Retrieves and sets the default values for the entry. Some of these values (e.g. PI, and Funding
* Source) are set by individual users as part of their personal preferences
*
* @param userId Unique identifier for user requesting the values.
* @param type entry type
* @return PartData object with the retrieve part defaults
*/
public PartData getPartDefaults(String userId, EntryType type) {
PartData partData = new PartData(type);
PreferencesController preferencesController = new PreferencesController();
// pi defaults
String value =
preferencesController.getPreferenceValue(
userId, PreferenceKey.PRINCIPAL_INVESTIGATOR.name());
if (value != null) {
Account piAccount = accountController.getByEmail(value);
if (piAccount == null) {
partData.setPrincipalInvestigator(value);
} else {
partData.setPrincipalInvestigator(piAccount.getFullName());
partData.setPrincipalInvestigatorEmail(piAccount.getEmail());
partData.setPrincipalInvestigatorId(piAccount.getId());
}
}
// funding source defaults
value = preferencesController.getPreferenceValue(userId, PreferenceKey.FUNDING_SOURCE.name());
if (value != null) {
partData.setFundingSource(value);
}
// owner and creator details
Account account = accountController.getByEmail(userId);
if (account != null) {
partData.setOwner(account.getFullName());
partData.setOwnerEmail(account.getEmail());
partData.setCreator(partData.getOwner());
partData.setCreatorEmail(partData.getOwnerEmail());
}
// set the entry type defaults
return EntryUtil.setPartDefaults(partData);
}