/*..........................................MContinuousStates................*/
public int userQueryItem(String message, MesquiteModule module) {
int numItems = getNumItems();
String[] items = new String[numItems];
for (int i = 0; i < items.length; i++) {
if (StringUtil.blank(getItemName(i))) items[i] = "(unnamed)";
else items[i] = getItemName(i);
}
return ListDialog.queryList(
module.containerOfModule(), "Select item", message, MesquiteString.helpString, items, 0);
}
public PAdjustToolExtra(NodePositionAdjust ownerModule, TreeDisplay treeDisplay) {
super(ownerModule, treeDisplay);
selectModule = ownerModule;
adjustTool =
new TreeTool(
this,
"posadjustor",
ownerModule.getPath(),
"adjustPosition.gif",
7,
7,
"Adjust node position",
"This tool adjusts branch lengths in such a way as to keep the relative positions of nodes constant, except for the node moved.");
adjustTool.setTouchedCommand(MesquiteModule.makeCommand("touchedPositionAdjust", this));
adjustTool.setDroppedCommand(MesquiteModule.makeCommand("droppedPositionAdjust", this));
adjustTool.setDraggedCommand(MesquiteModule.makeCommand("draggedPositionAdjust", this));
if (ownerModule.containerOfModule() instanceof MesquiteWindow) {
((MesquiteWindow) ownerModule.containerOfModule()).addTool(adjustTool);
}
}
/*.................................................................................................................*/
public void setTableAndTaxa(MesquiteTable table, Taxa taxa) {
this.table = table;
this.taxa = taxa;
if (containerOfModule() instanceof ListWindow && tool == null) {
String sortExplanation = "Assigns colors to taxa. ";
tool =
new TableTool(
this,
"sort",
getPath(),
"color.gif",
0,
0,
"Color taxon",
sortExplanation,
MesquiteModule.makeCommand("paint", this),
null,
null);
tool.setWorksOnRowNames(true);
((ListWindow) containerOfModule()).addTool(tool);
tool.setPopUpOwner(this);
}
}
public String getImagePath() { // TODO: this should use path to standard image
if (stacked) return MesquiteModule.getRootPath() + "images/miniscrollVert.gif";
else return MesquiteModule.getRootPath() + "images/miniscrollHoriz.gif";
}
