/**
* Loads the bytes in a file.
*
* @param name the file name
* @return an array with the bytes in the file
*/
public byte[] loadBytes(String name) throws IOException {
FileInputStream in = null;
in = new FileInputStream(name);
try {
ByteArrayOutputStream buffer = new ByteArrayOutputStream();
int ch;
while ((ch = in.read()) != -1) buffer.write(ch);
return buffer.toByteArray();
} finally {
in.close();
}
}
private void addFont(String fontKey, String fontName, float scale) {
try {
fontName = fontName.toLowerCase();
FileInputStream stream = new FileInputStream("data/fonts/ttf/" + fontName + ".ttf");
Font f = Font.createFont(Font.TRUETYPE_FONT, stream);
f = f.deriveFont(scale);
fonts.put(fontKey, f);
stream.close();
} catch (Exception e) {
e.printStackTrace();
}
}
// Function use to load all Records from File when Application Execute.
void populateArray() {
try {
fis = new FileInputStream("Bank.dat");
dis = new DataInputStream(fis);
// Loop to Populate the Array.
while (true) {
for (int i = 0; i < 6; i++) {
records[rows][i] = dis.readUTF();
}
rows++;
}
} catch (Exception ex) {
total = rows;
if (total == 0) {
JOptionPane.showMessageDialog(
null,
"Records File is Empty.\nEnter Records First to Display.",
"BankSystem - EmptyFile",
JOptionPane.PLAIN_MESSAGE);
btnEnable();
} else {
try {
dis.close();
fis.close();
} catch (Exception exp) {
}
}
}
}
// read a jpeg file into a buffered image
protected static Image loadJPG(String filename) {
FileInputStream in = null;
try {
in = new FileInputStream(filename);
} catch (java.io.FileNotFoundException io) {
System.out.println("File Not Found");
}
JPEGImageDecoder decoder = JPEGCodec.createJPEGDecoder(in);
BufferedImage bi = null;
try {
bi = decoder.decodeAsBufferedImage();
in.close();
} catch (java.io.IOException io) {
System.out.println("IOException");
}
return bi;
}
public static void convertCangjie() {
try {
int totalCangjieColumn = 6;
FileInputStream fis = new FileInputStream("../../res/raw/cj");
InputStreamReader input = new InputStreamReader(fis, "UTF-8");
BufferedReader reader = new BufferedReader(input);
String str = null;
int index = 0;
int total = 0;
char column[] = new char[5];
System.out.println("#define CANGJIE_COLUMN " + totalCangjieColumn);
System.out.println("const jchar cangjie[][CANGJIE_COLUMN] = {");
do {
str = reader.readLine();
if (str == null) break;
index = str.indexOf('\t');
if (index < 0) index = str.indexOf(' ');
if (index > 0) {
System.out.print("\t { ");
for (int count = 0; count < 5; count++) {
if (count < index) {
column[count] = str.charAt(count);
if (column[count] < 'a' || column[count] > 'z') column[count] = 0;
if (((int) column[count]) >= 10 || ((int) column[count]) <= 99) System.out.print(' ');
if (((int) column[count]) <= 9) System.out.print(' ');
System.out.print(((int) column[count]));
} else {
System.out.print(" 0");
}
System.out.print(", ");
}
System.out.println((int) str.charAt(index + 1) + " }, ");
total++;
}
} while (str != null);
System.out.println("};");
System.out.println("jint cangjie_index[" + total + "];");
System.out.println("jint cangjie_frequency[" + total + "];");
reader.close();
input.close();
fis.close();
} catch (Exception ex) {
ex.printStackTrace();
}
}
private void openBin() {
fileChooser.resetChoosableFileFilters();
fileChooser.addChoosableFileFilter(binFilter);
fileChooser.setFileFilter(binFilter);
if (fileChooser.showOpenDialog(frame) == JFileChooser.APPROVE_OPTION) {
try {
FileInputStream inbinf = new FileInputStream(fileChooser.getSelectedFile());
int len = inbinf.available();
if (len % 2 == 1) throw new IOException(String.format("Odd file size (0x%x)\n", len));
len /= 2;
if (len > 0x10000) throw new IOException(String.format("Too large file (0x%x)\n", len));
binary = new char[len];
for (int i = 0; i < len; i++) {
int lo = inbinf.read();
int hi = inbinf.read();
if (lo == -1 || hi == -1) throw new IOException("Unable to read\n");
binary[i] = (char) ((hi << 8) | lo);
}
asmMap = new AsmMap();
Disassembler dasm = new Disassembler();
dasm.init(binary);
// TODO attach asmmap
StringBuilder sb = new StringBuilder();
while (dasm.getAddress() < binary.length) {
int addr = dasm.getAddress();
sb.append(String.format("%-26s ; [%04x] =", dasm.next(true), addr));
int addr2 = dasm.getAddress();
while (addr < addr2) {
char i = binary[addr++];
sb.append(
String.format(" %04x '%s'", (int) i, (i >= 0x20 && i < 0x7f) ? (char) i : '.'));
}
sb.append("\n");
}
srcBreakpoints.clear();
sourceRowHeader.breakpointsChanged();
sourceTextarea.setText(sb.toString());
} catch (IOException e1) {
JOptionPane.showMessageDialog(
frame, "Unable to open file: %s" + e1.getMessage(), "Error", JOptionPane.ERROR_MESSAGE);
e1.printStackTrace();
}
}
}
private AsmCodeGenerator initCodeGenerator(
final String formFileName, final String className, final String testDataPath)
throws Exception {
String tmpPath = FileUtil.getTempDirectory();
String formPath = testDataPath + formFileName;
String javaPath = testDataPath + className + ".java";
final int rc = Main.compile(new String[] {"-d", tmpPath, javaPath});
assertEquals(0, rc);
final String classPath = tmpPath + "/" + className + ".class";
final File classFile = new File(classPath);
assertTrue(classFile.exists());
final LwRootContainer rootContainer = loadFormData(formPath);
final AsmCodeGenerator codeGenerator =
new AsmCodeGenerator(
rootContainer,
myClassFinder,
myNestedFormLoader,
false,
new ClassWriter(ClassWriter.COMPUTE_FRAMES));
final FileInputStream classStream = new FileInputStream(classFile);
try {
codeGenerator.patchClass(classStream);
} finally {
classStream.close();
FileUtil.delete(classFile);
final File[] inners =
new File(tmpPath)
.listFiles(
new FilenameFilter() {
@Override
public boolean accept(File dir, String name) {
return name.startsWith(className + "$") && name.endsWith(".class");
}
});
if (inners != null) {
for (File file : inners) FileUtil.delete(file);
}
}
return codeGenerator;
}
public static void zipDirectory(File directory, File base, ZipOutputStream zos)
throws IOException {
File[] files = directory.listFiles();
byte[] buffer = new byte[8192];
int read = 0;
for (int i = 0, n = files.length; i < n; i++) {
if (files[i].isDirectory()) {
zipDirectory(files[i], base, zos);
} else {
FileInputStream in = new FileInputStream(files[i]);
ZipEntry entry = new ZipEntry(files[i].getPath().substring(base.getPath().length() + 1));
zos.putNextEntry(entry);
while (-1 != (read = in.read(buffer))) {
zos.write(buffer, 0, read);
}
in.close();
}
}
}
private void laden(Path saveName) throws IOException {
Properties prop = new Properties();
FileInputStream in = new FileInputStream(saveName.toString());
prop.load(in);
for (int i = 0; prop.containsKey(String.format("quellMenu%d", i)); i++)
quellListModel.addElement(
new ListItem(
Paths.get(prop.getProperty(String.format("quellMenu%d", i))),
Paths.get(prop.getProperty(String.format("quellMenu%d", i)))));
for (int i = 0; prop.containsKey(String.format("zielMenu%d", i)); i++)
zielListModel.addElement(
new ListItem(
Paths.get(prop.getProperty(String.format("zielMenu%d", i))),
Paths.get(prop.getProperty(String.format("zielMenu%d", i)))));
in.close();
}
private void openSrc() {
fileChooser.resetChoosableFileFilters();
fileChooser.addChoosableFileFilter(asmFilter);
fileChooser.setFileFilter(asmFilter);
if (fileChooser.showOpenDialog(frame) == JFileChooser.APPROVE_OPTION) {
try {
FileInputStream input = new FileInputStream(fileChooser.getSelectedFile());
char[] csources = new char[input.available()];
new InputStreamReader(input).read(csources, 0, csources.length);
srcBreakpoints.clear();
sourceRowHeader.breakpointsChanged();
sourceTextarea.setText(new String(csources));
asmMap = new AsmMap();
binary = new char[0];
} catch (IOException e1) {
JOptionPane.showMessageDialog(
frame, "Unable to open file", "Error", JOptionPane.ERROR_MESSAGE);
e1.printStackTrace();
}
}
}
public void openFile(String filename) {
try {
FileInputStream input = new FileInputStream(filename);
char x;
for (int i = 0; i < 9; i++) {
for (int j = 0; j < 9; j++) {
x = (char) input.read();
if (x == 'P') {
puzzleBox[i][j].setText(String.valueOf((char) input.read()));
puzzleBox[i][j].setEnabled(false);
} else {
x = (char) input.read();
if (x == 'X') {
puzzleBox[i][j].setText("");
puzzleBox[i][j].setEnabled(true);
} else {
puzzleBox[i][j].setText(String.valueOf(x));
puzzleBox[i][j].setEnabled(true);
}
}
}
x = (char) input.read();
x = (char) input.read();
}
input.close();
} catch (IOException ioException) {
JOptionPane.showMessageDialog(this, "Error Opening File", "Error", JOptionPane.ERROR_MESSAGE);
}
}
protected static boolean vnmrjPassword(String strUser, char[] password) {
boolean blogin = false;
try {
PasswordService objPassword = PasswordService.getInstance();
String encrPassword = objPassword.encrypt(new String(password));
if (pwprops == null) {
String strPath = FileUtil.openPath(WUserUtil.PASSWORD);
if (strPath == null) return blogin;
pwprops = new Properties();
FileInputStream fis = new FileInputStream(strPath);
pwprops.load(fis);
fis.close();
}
String stoPassword = pwprops.getProperty(strUser);
if (encrPassword.equals(stoPassword)) blogin = true;
} catch (Exception e) {
// e.printStackTrace();
Messages.writeStackTrace(e);
}
return blogin;
}
/** Procedure to set value for the code-swap strings */
void getCodeSwapString() {
File inputFile = new File(fileStr1);
FileInputStream input = null;
try {
input = new FileInputStream(inputFile);
} catch (FileNotFoundException fe) {
System.err.println(fileStr1 + " not found. " + fe);
// System.exit(-1);;
}
byte bt[] = new byte[(int) inputFile.length()];
try {
input.read(bt);
textStr1 = new String(bt);
input.close();
} catch (IOException ie) {
System.err.println("Can't read from the input stream " + ie);
// System.exit(-1);;
}
inputFile = new File(fileStr2);
try {
input = new FileInputStream(inputFile);
} catch (FileNotFoundException fe) {
System.err.println(fileStr2 + " not found. " + fe);
// System.exit(-1);;
}
try {
bt = new byte[(int) inputFile.length()];
input.read(bt);
textStr2 = new String(bt);
input.close();
} catch (IOException ie) {
System.err.println("Can't read from the input stream " + ie);
// System.exit(-1);;
}
}
public void loadState(String extension) {
String directory = cartridge.romFileName + extension;
try {
reset();
FileInputStream fl = new FileInputStream(directory);
DataInputStream sv = new DataInputStream(fl);
// write cpu data
loadData(sv, directory);
// write battery ram
cartridge.loadData(sv, directory);
// write graphic memory
graphicsChip.loadData(sv, directory);
// writes io state
ioHandler.loadData(sv, directory);
sv.close();
fl.close();
} catch (FileNotFoundException ex) {
System.out.println("Dmgcpu.loadState: Could not open file " + directory);
System.out.println("Error Message: " + ex.getMessage());
System.exit(-1);
} catch (IOException ex) {
System.out.println("Dmgcpu.loadState: Could not read file " + directory);
System.out.println("Error Message: " + ex.getMessage());
System.exit(-1);
}
System.out.println("Loaded stage!");
}
private static ImageData readPPM(File file) throws IOException, BadImageFileException {
FileInputStream s = new FileInputStream(file);
ImageData imageData;
try {
String S1 = readln(s);
int width;
int height;
int bands;
int dataType;
if (S1.equals("P5") || S1.equals("P6")) {
bands = S1.equals("P5") ? 1 : 3;
String S2 = readln(s);
String S3 = readln(s);
String dimensions[] = S2.split("\\s");
width = Integer.parseInt(dimensions[0]);
height = Integer.parseInt(dimensions[1]);
dataType = S3.equals("255") ? DataBuffer.TYPE_BYTE : DataBuffer.TYPE_USHORT;
imageData = new ImageData(width, height, bands, dataType);
} else if (S1.equals("P7")) {
String WIDTH = "WIDTH ";
String HEIGHT = "HEIGHT ";
String DEPTH = "DEPTH ";
String MAXVAL = "MAXVAL ";
// String TUPLTYPE = "TUPLTYPE ";
// String ENDHDR = "ENDHDR";
String SWIDTH = readln(s);
width = Integer.parseInt(SWIDTH.substring(WIDTH.length()));
String SHEIGHT = readln(s);
height = Integer.parseInt(SHEIGHT.substring(HEIGHT.length()));
String SDEPTH = readln(s);
bands = Integer.parseInt(SDEPTH.substring(DEPTH.length()));
String SMAXVAL = readln(s);
dataType =
SMAXVAL.substring(MAXVAL.length()).equals("65535")
? DataBuffer.TYPE_USHORT
: DataBuffer.TYPE_BYTE;
// String STUPLTYPE = readln(s);
// String SENDHDR = readln(s);
imageData = new ImageData(width, height, bands, dataType);
} else return null;
int totalData = width * height * bands * (dataType == DataBuffer.TYPE_BYTE ? 1 : 2);
FileChannel c = s.getChannel();
if (file.length() != totalData + c.position()) {
c.close();
throw new BadImageFileException(file);
}
ByteBuffer bb = c.map(FileChannel.MapMode.READ_ONLY, c.position(), totalData);
if (dataType == DataBuffer.TYPE_USHORT) {
// bb.order(ByteOrder.BIG_ENDIAN);
bb.order(ByteOrder.nativeOrder());
bb.asShortBuffer().get((short[]) imageData.data);
// Darty hack to prevent crash on Arch Linux (issue #125)
if (ByteOrder.nativeOrder() != ByteOrder.BIG_ENDIAN)
for (int i = 0; i < ((short[]) imageData.data).length; ++i)
((short[]) imageData.data)[i] = Short.reverseBytes(((short[]) imageData.data)[i]);
} else bb.get((byte[]) imageData.data);
if (bb instanceof DirectBuffer) ((DirectBuffer) bb).cleaner().clean();
c.close();
} catch (Exception e) {
e.printStackTrace();
s.close();
throw new BadImageFileException(file, e);
} finally {
s.close();
}
return imageData;
}
public static void convertQuick() {
try {
HashMap<String, ArrayList<Character>> charList = new HashMap<String, ArrayList<Character>>();
Font font = new Font("Droid Sans Fallback", 16, Font.PLAIN);
int totalQuickColumn = 3;
FileInputStream fis = new FileInputStream("quick-classic.txt");
InputStreamReader input = new InputStreamReader(fis, "UTF-8");
BufferedReader reader = new BufferedReader(input);
String str = null;
int index = 0;
int total = 0;
ArrayList<String> keyList = new ArrayList<String>();
System.out.println("#define QUICK_COLUMN " + totalQuickColumn);
System.out.println("const jchar quick[][QUICK_COLUMN] = {");
do {
str = reader.readLine();
if (str == null) break;
index = str.indexOf('\t');
if (index < 0) index = str.indexOf(' ');
if (index > 0) {
if (font.canDisplay(str.charAt(index + 1))) {
StringBuffer sb = new StringBuffer();
// System.out.print("\t { ");
if ((int) str.charAt(1) == 9 || str.charAt(1) == ' ') {
// System.out.print("'" + str.charAt(0) + "', 0, ");
sb.append(str.charAt(0));
} else {
sb.append(str.charAt(0));
sb.append(str.charAt(1));
// System.out.print("'" + str.charAt(0) + "', '" + str.charAt(1) + "', ");
}
String key = sb.toString();
// System.out.println((int) str.charAt(index + 1) + " }, ");
Character ch = new Character(str.charAt(index + 1));
if (!keyList.contains(key)) keyList.add(key);
if (charList.containsKey(key)) {
charList.get(key).add(ch);
} else {
ArrayList<Character> c = new ArrayList<Character>();
c.add(ch);
charList.put(key, c);
}
total++;
}
}
} while (str != null);
for (int count = 0; count < keyList.size(); count++) {
String k = keyList.get(count);
ArrayList<Character> l = charList.get(k);
for (int loop = 0; loop < l.size(); loop++) {
if (k.length() == 1) {
System.out.println("\t { '" + k.charAt(0) + "', 0, " + l.get(loop) + " }, ");
} else {
System.out.println(
"\t { '" + k.charAt(0) + "', '" + k.charAt(1) + "', " + l.get(loop) + " }, ");
}
}
}
System.out.println("};");
System.out.println("jint quick_index[" + total + "];");
System.out.println("jint quick_frequency[" + total + "];");
reader.close();
input.close();
fis.close();
} catch (Exception ex) {
ex.printStackTrace();
}
}
public static void convertCangjieHK() {
try {
Font font = new Font("Droid Sans Fallback", 16, Font.PLAIN);
ArrayList<String> codeList = new ArrayList<String>();
HashMap<String, ArrayList<CangjieChar>> codeMap =
new HashMap<String, ArrayList<CangjieChar>>();
int totalCangjieColumn = 7;
FileInputStream fis = new FileInputStream("cangjie3.txt");
InputStreamReader input = new InputStreamReader(fis, "UTF-8");
BufferedReader reader = new BufferedReader(input);
String str = null;
int index = 0;
int total = 0;
char column[] = new char[5];
boolean hkchar = false;
System.out.println("#define CANGJIE_COLUMN " + totalCangjieColumn);
System.out.println("const jchar cangjie[][CANGJIE_COLUMN] = {");
do {
str = reader.readLine();
if (str == null) break;
if (str.compareTo("#####") == 0) {
hkchar = true;
continue;
}
index = str.indexOf('\t');
if (index < 0) index = str.indexOf(' ');
if (index > 0 && font.canDisplay(str.charAt(index + 1))) {
int type = Character.getType(str.charAt(index + 1));
if (Character.isLetter(str.charAt(index + 1))
|| type == Character.START_PUNCTUATION
|| type == Character.END_PUNCTUATION
|| type == Character.OTHER_PUNCTUATION
|| type == Character.MATH_SYMBOL
|| type == Character.DASH_PUNCTUATION
|| type == Character.CONNECTOR_PUNCTUATION
|| type == Character.OTHER_SYMBOL
|| type == Character.INITIAL_QUOTE_PUNCTUATION
|| type == Character.FINAL_QUOTE_PUNCTUATION
|| type == Character.SPACE_SEPARATOR) {
// System.out.print("\t { ");
// for (int count = 0; count < 5; count++) {
// if (count < index) {
// column[count] = str.charAt(count);
// if (column[count] < 'a' || column[count] > 'z') column[count] = 0;
// if (((int) column[count]) >= 10 || ((int) column[count]) <= 99) System.out.print('
// ');
// if (((int) column[count]) <= 9) System.out.print(' ');
// System.out.print(((int) column[count]));
// } else {
// System.out.print(" 0");
// }
// System.out.print(", ");
// }
// System.out.println((int) str.charAt(index + 1) + " }, ");
String cangjie = str.substring(0, index).trim();
char ch = str.charAt(index + 1);
if (!codeList.contains(cangjie)) codeList.add(cangjie);
ArrayList<CangjieChar> list = null;
if (codeMap.containsKey(cangjie)) {
list = codeMap.get(cangjie);
} else {
list = new ArrayList<CangjieChar>();
}
CangjieChar cc = new CangjieChar(ch, hkchar);
list.add(cc);
codeMap.put(cangjie, list);
total++;
} else {
System.err.println(
"Character Not Found : "
+ str.charAt(index + 1)
+ " "
+ Character.getType(str.charAt(index + 1)));
}
}
} while (str != null);
Collections.sort(codeList);
for (int count0 = 0; count0 < codeList.size(); count0++) {
String _str = codeList.get(count0);
ArrayList<CangjieChar> ca = codeMap.get(_str);
for (int count1 = 0; count1 < ca.size(); count1++) {
for (int count2 = 0; count2 < 5; count2++) {
if (count2 < _str.length()) System.out.print("'" + _str.charAt(count2) + "', ");
else System.out.print(" 0, ");
}
System.out.println(((int) ca.get(count1).c) + ", " + (ca.get(count1).hk ? 1 : 0) + ", ");
}
}
System.out.println("};");
System.out.println("jint cangjie_index[" + total + "];");
System.out.println("jint cangjie_frequency[" + total + "];");
reader.close();
input.close();
fis.close();
} catch (Exception ex) {
ex.printStackTrace();
}
}
public static void main(String[] arg) {
if (arg.length != 2) {
System.err.println("usage: java ScpTo file1 user@remotehost:file2");
System.exit(-1);
}
FileInputStream fis = null;
try {
String lfile = arg[0];
String user = arg[1].substring(0, arg[1].indexOf('@'));
arg[1] = arg[1].substring(arg[1].indexOf('@') + 1);
String host = arg[1].substring(0, arg[1].indexOf(':'));
String rfile = arg[1].substring(arg[1].indexOf(':') + 1);
JSch jsch = new JSch();
Session session = jsch.getSession(user, host, 22);
// username and password will be given via UserInfo interface.
UserInfo ui = new MyUserInfo();
session.setUserInfo(ui);
session.connect();
boolean ptimestamp = true;
// exec 'scp -t rfile' remotely
String command = "scp " + (ptimestamp ? "-p" : "") + " -t " + rfile;
Channel channel = session.openChannel("exec");
((ChannelExec) channel).setCommand(command);
// get I/O streams for remote scp
OutputStream out = channel.getOutputStream();
InputStream in = channel.getInputStream();
channel.connect();
if (checkAck(in) != 0) {
System.exit(0);
}
File _lfile = new File(lfile);
if (ptimestamp) {
command = "T " + (_lfile.lastModified() / 1000) + " 0";
// The access time should be sent here,
// but it is not accessible with JavaAPI ;-<
command += (" " + (_lfile.lastModified() / 1000) + " 0\n");
out.write(command.getBytes());
out.flush();
if (checkAck(in) != 0) {
System.exit(0);
}
}
// send "C0644 filesize filename", where filename should not include '/'
long filesize = _lfile.length();
command = "C0644 " + filesize + " ";
if (lfile.lastIndexOf('/') > 0) {
command += lfile.substring(lfile.lastIndexOf('/') + 1);
} else {
command += lfile;
}
command += "\n";
out.write(command.getBytes());
out.flush();
if (checkAck(in) != 0) {
System.exit(0);
}
// send a content of lfile
fis = new FileInputStream(lfile);
byte[] buf = new byte[1024];
while (true) {
int len = fis.read(buf, 0, buf.length);
if (len <= 0) break;
out.write(buf, 0, len); // out.flush();
}
fis.close();
fis = null;
// send '\0'
buf[0] = 0;
out.write(buf, 0, 1);
out.flush();
if (checkAck(in) != 0) {
System.exit(0);
}
out.close();
channel.disconnect();
session.disconnect();
System.exit(0);
} catch (Exception e) {
System.out.println(e);
try {
if (fis != null) fis.close();
} catch (Exception ee) {
}
}
}
public void runEvaluator() {
int nSize = r.getNodeCount();
nodeValues = new Double[nSize];
allValues = new Double[nSize][];
for (int i = 0; i < nSize; i++) {
allValues[i] = new Double[nSize];
}
// get Oj's
double[] o = new double[nSize];
if (orgFile == null) {
for (int i = 0; i < nSize; i++) {
o[i] = 1.0;
}
} else {
try {
FileInputStream fis = new FileInputStream(orgFile);
InputStreamReader isr = new InputStreamReader(fis);
BufferedReader in = new BufferedReader(isr, 8096);
String line = in.readLine();
// try to guess delimiters
String delim = " ";
if (line.indexOf('\t') != 0) {
delim = "\t";
} else if (line.indexOf(',') != 0) {
delim = ",";
}
Hashtable values = new Hashtable();
while (line != null) {
StringTokenizer st = new StringTokenizer(line, delim);
line = in.readLine();
String key = st.nextToken().trim();
if (st.hasMoreTokens()) {
try {
Double d = Double.valueOf(st.nextToken());
values.put(key, d);
} catch (NumberFormatException nfe) {
// ignore?
}
}
}
fis.close();
TreeSet missingActors = new TreeSet();
for (int i = 0; i < nSize; i++) {
String actorName = r.getParent().getActor(i).getName();
Double oValue = (Double) values.get(actorName);
if (oValue == null) {
missingActors.add(actorName);
o[i] = 1.0;
} else {
o[i] = oValue.doubleValue();
}
}
if (missingActors.size() > 0) {
String errorMsg = "Couldn't find organization values for ";
if (missingActors.size() <= 10) {
Iterator iter = missingActors.iterator();
errorMsg += "'" + iter.next() + "'";
while (iter.hasNext()) {
errorMsg += ", '" + iter.next() + "'";
}
errorMsg += ".";
} else {
errorMsg += missingActors.size() + " actors.";
}
JFrame f = new JFrame();
JOptionPane.showMessageDialog(
f, errorMsg, "Missing Values", JOptionPane.WARNING_MESSAGE);
}
} catch (IOException ioe) {
Application.handleNonFatalThrowable(ioe);
}
}
// i think i need to calculate all p_ij's
double[][] p = new double[nSize][];
for (int i = 0; i < nSize; i++) {
p[i] = new double[nSize];
double i_out = 0.0;
for (int j = 0; j < nSize; j++) {
if ((i != j) || (!ignoreDiagonals)) {
if (investments == OUTBOUND || investments == BOTH) {
i_out += r.getTieStrength(i, j);
}
if (investments == INBOUND || investments == BOTH) {
i_out += r.getTieStrength(j, i);
}
}
}
for (int j = 0; j < nSize; j++) {
p[i][j] = 0.0;
if (i_out != 0.0) {
if (investments == OUTBOUND || investments == BOTH) {
p[i][j] += r.getTieStrength(i, j) / i_out;
}
if (investments == INBOUND || investments == BOTH) {
p[i][j] += r.getTieStrength(j, i) / i_out;
}
}
}
}
switch (type) {
// implementation of Burt (1992: 64) equation 2.7
case CONSTRAINT:
for (int i = 0; i < nSize; i++) {
double i_total = 0.0;
allValues[i][i] = new Double(Double.NaN);
for (int j = 0; j < nSize; j++) {
if (i != j) {
double c_sum = p[i][j];
for (int q = 0; q < nSize; q++) {
if ((q != i) && (q != j)) {
c_sum += p[i][q] * p[q][j];
}
}
double c_ij = c_sum * c_sum * o[j];
i_total += c_ij;
allValues[i][j] = new Double(c_ij);
}
}
nodeValues[i] = new Double(i_total);
}
break;
case EFFECTIVE_SIZE:
break;
}
}
public void actionPerformed(ActionEvent e) {
if (e.getSource() == jbSaveLayer) {
try {
FileOutputStream fout = new FileOutputStream(jtfCengMing.getText() + ".wyf");
ObjectOutputStream oout = new ObjectOutputStream(fout);
oout.writeObject(itemArray);
oout.close();
fout.close();
} catch (Exception ea) {
ea.printStackTrace();
}
} else if (e.getSource() == jbLoadLayer) {
try {
FileInputStream fin = new FileInputStream(jtfCengMing.getText() + ".wyf");
ObjectInputStream oin = new ObjectInputStream(fin);
itemArray = (Item[][]) oin.readObject();
oin.close();
fin.close();
this.flush();
} catch (Exception ea) {
ea.printStackTrace();
}
lvp.repaint();
} else if (e.getSource() == jbLoadAll) { // 全部铺上当前选中
for (int row = 0; row < 40; row++) {
for (int col = 0; col < 60; col++) {
Item item = ((Item) (jl.getSelectedValue())).clone();
itemArray[row][col] = item;
if (item != null) {
item.setPosition(col, row);
}
}
}
lvp.repaint();
} else if (e.getSource() == jbCreate) { // 生成源代码
try {
FileOutputStream fout = null;
DataOutputStream dout = null;
fout = new FileOutputStream("maps.so");
dout = new DataOutputStream(fout);
int totalBlocks = 0;
for (int i = 0; i < 40; i++) {
for (int j = 0; j < 60; j++) {
Item item = itemArray[i][j];
if (item != null) {
totalBlocks++;
}
}
}
System.out.println("totalBlocks=" + totalBlocks);
// 写入不空块的数量
dout.writeInt(totalBlocks);
for (int i = 0; i < 40; i++) {
for (int j = 0; j < 60; j++) {
Item item = itemArray[i][j];
if (item != null) {
int w = item.w; // 元素的图片宽度
int h = item.h; // 元素的图片高度
int col = item.col; // 元素的地图列
int row = item.row; // 元素的地图行
int pCol = item.pCol; // 元素的占位列
int pRow = item.pRow; // 元素的占位行
String leiMing = item.leiMing; // 类名
int[][] notIn = item.notIn; // 不可通过
int[][] keYu = item.keYu; // 可遇矩阵
// 计算图片下标
int outBitmapInxex = 0;
if (leiMing.equals("Grass")) {
outBitmapInxex = 0;
} else if (leiMing.equals("XiaoHua1")) {
outBitmapInxex = 1;
} else if (leiMing.equals("MuZhuang")) {
outBitmapInxex = 2;
} else if (leiMing.equals("XiaoHua2")) {
outBitmapInxex = 3;
} else if (leiMing.equals("Road")) {
outBitmapInxex = 4;
} else if (leiMing.equals("Jing")) {
outBitmapInxex = 5;
}
dout.writeByte(outBitmapInxex); // 记录图片下标
dout.writeByte(0); // 记录可遇标志 0-不可遇 底层都不可遇
dout.writeByte(w); // 图片宽度
dout.writeByte(h); // 图片高度
dout.writeByte(col); // 总列数
dout.writeByte(row); // 总行数
dout.writeByte(pCol); // 占位列
dout.writeByte(pRow); // 占位行
int bktgCount = notIn.length; // 不可通过点的数量
dout.writeByte(bktgCount); // 写入不可通过点的数量
for (int k = 0; k < bktgCount; k++) {
dout.writeByte(notIn[k][0]);
dout.writeByte(notIn[k][1]);
}
}
}
}
dout.close();
fout.close();
} catch (Exception ea) {
ea.printStackTrace();
}
}
}
/**
* Parse the section file and fill in the Dbase.
*
* @return Success code
*/
public void parse() throws Exception {
JOAParameter tempProperties[] = new JOAParameter[100];
FileInputStream in = null;
DataInputStream inData = null;
short inShort = 0;
long bytesRead = 0;
long bytesInFile = mFile.length();
short[] sarray = new short[1];
int mTotalStns = 0;
EPSProgressDialog mProgress = new EPSProgressDialog(new Frame(), mProgressStr, Color.blue);
mProgress.setVisible(true);
// Get an epic key database specific to JOA
EPIC_Key_DB mEpicKeyDB = new EPIC_Key_DB("joa_epic.key");
// Get an epic key database specific to JOA
EPIC_Key_DB mOrigEpicKeyDB = new EPIC_Key_DB("epic.key");
// create a vector for temporary storage of the dbases
Vector dBases = new Vector(100);
try {
in = new FileInputStream(mFile);
BufferedInputStream bis = new BufferedInputStream(in, 1000000);
inData = new DataInputStream(bis);
// read version
short vers = inData.readShort();
bytesRead += 2;
if (vers < 2) {
FileImportException fiex = new FileImportException();
String errStr = "Invalid version for a JOA binary file";
fiex.setErrorType(errStr);
throw fiex;
}
// read number of bytes in file description string
inShort = inData.readShort();
bytesRead += 2;
// read the file description String
byte buf[] = new byte[inShort];
inData.read(buf, 0, inShort);
String fileDescrip = new String(buf);
bytesRead += inShort;
// create a new open file object
JOADataFile of = new JOADataFile(fileDescrip);
// read the number of sections
int numSections = inData.readShort();
bytesRead += 2;
// read each section
JOASection sech;
int ord = 0;
for (int s = 0; s < numSections; s++) {
mProgress.setPercentComplete(100.0 * ((double) bytesRead / (double) bytesInFile));
// read the section header
inShort = inData.readShort();
bytesRead += 2;
byte buf1[] = new byte[inShort];
inData.read(buf1, 0, inShort);
String sectionDescrip = new String(buf1);
bytesRead += inShort;
// read the ship code
byte bufsc[] = new byte[2];
bufsc[0] = inData.readByte();
bufsc[1] = inData.readByte();
String shipCode = new String(bufsc);
bytesRead += 2;
// read num casts
int numCasts = inData.readShort();
bytesRead += 2;
// read num parameters
int numVars = inData.readShort();
bytesRead += 2;
// quality code
int qcStd = 1;
if (vers == 4) {
qcStd = inData.readShort();
bytesRead += 2;
}
// create a new section
of.mNumSections++;
sech = new JOASection(of.mNumSections, sectionDescrip, shipCode, numCasts, numVars);
if (vers == 2) {
// read the properties
byte bufv[] = new byte[4];
for (int p = 0; p < numVars; p++) {
// parameter name
inData.read(bufv, 0, 4);
String tempVar = new String(bufv);
bytesRead += 4;
// units
inShort = inData.readShort();
bytesRead += 2;
String units = null;
if (inShort > 0) {
byte buf11[] = new byte[inShort];
inData.read(buf11, 0, inShort);
units = new String(buf11);
bytesRead += inShort;
}
// convert varnames to UC
tempVar.toUpperCase();
// create new property
tempProperties[p] = new JOAParameter(tempVar, units);
// add this property to the section property list
if (tempProperties[p].mUnits == null) {
tempProperties[p].mUnits =
EPS_Util.paramNameToJOAUnits(false, tempProperties[0].mVarLabel);
}
if (tempProperties[p].mUnits == null) {
tempProperties[p].mUnits = new String("na");
}
tempProperties[p].mCastOrObs = EPSConstants.ALL_OBS;
// read the actual scale
int actScale = inData.readShort();
bytesRead += 2;
if (actScale != 0) tempProperties[p].mActScale = 1.0 / (double) actScale;
else tempProperties[p].mActScale = 1.0;
// read the actual origin
int actOrigin = inData.readShort();
tempProperties[p].mActOrigin = (double) actOrigin * tempProperties[p].mActScale;
// read reverse y
int reverseY = inData.readShort();
bytesRead += 2;
if (reverseY == 0) tempProperties[p].mReverseY = false;
else tempProperties[p].mReverseY = true;
tempProperties[p].mWasCalculated = false;
}
} else {
// read the properties
String tempVar = null;
for (int p = 0; p < numVars; p++) {
// length of parameter name
inShort = inData.readShort();
bytesRead += 2;
// parameter name
if (inShort > 0) {
byte buf13[] = new byte[inShort];
inData.read(buf13, 0, inShort);
tempVar = new String(buf13);
bytesRead += inShort;
}
// units
inShort = inData.readShort();
bytesRead += 2;
String units = null;
if (inShort > 0) {
byte buf11[] = new byte[inShort];
inData.read(buf11, 0, inShort);
units = new String(buf11);
bytesRead += inShort;
}
// convert varnames to UC
tempVar = tempVar.toUpperCase();
// create new property
tempProperties[p] = new JOAParameter(tempVar, units);
// add this property to the section property list
if (tempProperties[p].mUnits == null) {
tempProperties[p].mUnits =
EPS_Util.paramNameToJOAUnits(false, tempProperties[0].mVarLabel);
}
if (tempProperties[p].mUnits == null) {
tempProperties[p].mUnits = new String("na");
}
tempProperties[p].mCastOrObs = EPSConstants.ALL_OBS;
// read the actual scale
int actScale = inData.readShort();
bytesRead += 2;
if (actScale != 0) tempProperties[p].mActScale = 1.0 / (double) actScale;
else tempProperties[p].mActScale = 1.0;
// read the actual origin
int actOrigin = inData.readShort();
tempProperties[p].mActOrigin = (double) actOrigin * tempProperties[p].mActScale;
// read reverse y
int reverseY = inData.readShort();
bytesRead += 2;
if (reverseY == 0) tempProperties[p].mReverseY = false;
else tempProperties[p].mReverseY = true;
tempProperties[p].mWasCalculated = false;
}
}
// read the cast headers
for (int c = 0; c < numCasts; c++) {
// read station number
inShort = inData.readShort();
bytesRead += 2;
byte bufx[] = new byte[inShort];
inData.read(bufx, 0, inShort);
String stnNum = new String(bufx);
bytesRead += inShort;
// read cast number
int castNum = inData.readShort();
bytesRead += 2;
double myLat = 0.0;
double myLon = 0.0;
if (vers == 2) {
// read latitude/lon
int lat = inData.readInt();
bytesRead += 4;
int lon = inData.readInt();
bytesRead += 4;
myLat = lat * 0.001;
myLon = lon * 0.001;
} else if (vers > 2) {
// read latitude/lon
myLat = inData.readDouble();
bytesRead += 8;
myLon = inData.readDouble();
bytesRead += 4;
}
// read number of bottles
int numBottles = inData.readShort();
bytesRead += 2;
// read the date
int year = inData.readInt();
bytesRead += 4;
int month = inData.readInt();
bytesRead += 4;
int day = inData.readInt();
bytesRead += 4;
int hour = inData.readInt();
bytesRead += 4;
double min = inData.readDouble();
bytesRead += 8;
// read bottom
int bottomdbar = inData.readInt();
// read station quality
int stnQual = inData.readShort();
bytesRead += 2;
ord++;
JOAStation sh =
new JOAStation(
ord,
shipCode,
stnNum,
castNum,
myLat,
myLon,
numBottles,
year,
month,
day,
hour,
min,
bottomdbar,
stnQual);
sech.mStations.addElement(sh);
sh.setType("JOA BOTTLE");
// make a DBase object
Dbase db = new Dbase();
// add the global attributes
db.addEPSAttribute(
"CRUISE", EPCHAR, sech.mSectionDescription.length(), sech.mSectionDescription);
db.addEPSAttribute("CAST", EPCHAR, sh.mStnNum.length(), sh.mStnNum);
sarray[0] = (short) sh.mBottomDepthInDBARS;
db.addEPSAttribute("WATER_DEPTH", EPSHORT, 1, sarray);
db.addEPSAttribute("DATA_ORIGIN", EPCHAR, sech.mShipCode.length(), sech.mShipCode);
String dType = sh.getType();
if (dType == null) dType = "UNKN";
db.addEPSAttribute("DATA_TYPE", EPCHAR, dType.length(), dType);
sarray[0] = (short) stnQual;
db.addEPSAttribute("STN_QUALITY", EPSHORT, 1, sarray);
db.setDataType("JOA BOTTLE");
// add to temporary collection
dBases.addElement(db);
}
int start = mTotalStns;
int end = sech.mStations.size() + mTotalStns;
for (int sc = start; sc < end; sc++) {
mProgress.setPercentComplete(100.0 * ((double) bytesRead / (double) bytesInFile));
// get a dBase
Dbase db = (Dbase) dBases.elementAt(sc);
// get a station
JOAStation sh = (JOAStation) sech.mStations.elementAt(sc - start);
// create an array of arrays to store the data
double[][] va = new double[sech.mNumVars][sh.mNumBottles];
int[][] qc = new int[sech.mNumVars][sh.mNumBottles];
short[] bqc = new short[sh.mNumBottles];
int presPos = 0;
// read the bottles
for (int b = 0; b < sh.mNumBottles; b++) {
// read the bottle quality code
bqc[b] = inData.readShort();
bytesRead += 2;
for (int v = 0; v < sech.mNumVars; v++) {
// store the position of the PRES variable
if (tempProperties[v].mVarLabel.equals("PRES")) presPos = v;
// get the measured parameter
double dVarVal = EPSConstants.MISSINGVALUE;
try {
dVarVal = inData.readDouble();
} catch (IOException e) {
FileImportException fiex = new FileImportException();
String errStr =
"Error reading the parameter data. "
+ "\n"
+ "Bottle #"
+ b
+ " Parameter #"
+ v;
fiex.setErrorType(errStr);
throw fiex;
}
bytesRead += 8;
// store the value in the multidimensional array
va[v][b] = dVarVal;
// get the quality flag
short flag = (short) EPSConstants.MISSINGVALUE;
try {
flag = inData.readShort();
} catch (IOException e) {
FileImportException fiex = new FileImportException();
String errStr =
"Error reading the parameter quality code. "
+ "\n"
+ "Bottle #"
+ b
+ " Parameter #"
+ v;
fiex.setErrorType(errStr);
throw fiex;
}
bytesRead += 2;
qc[v][b] = flag;
} // for v
} // for b
// add the bottle quality codes as an attribute
db.addEPSAttribute("BOTTLE_QUALITY_CODES", EPSHORT, sh.mNumBottles, bqc);
// create the axes time = 0, depth = 1, lat = 2, lon = 3
Axis timeAxis = new Axis();
Axis zAxis = new Axis();
Axis latAxis = new Axis();
Axis lonAxis = new Axis();
// time axis
timeAxis.setName("time");
timeAxis.setTime(true);
timeAxis.setUnlimited(false);
timeAxis.setAxisType(EPTAXIS);
timeAxis.setLen(1);
int hour = 0;
if (sh.mHour != EPSConstants.MISSINGVALUE) hour = sh.mHour;
double mins = 0;
if (sh.mMinute != EPSConstants.MISSINGVALUE) mins = sh.mMinute;
// make the time axis units
String date = "days since ";
int min = (int) mins;
double fmin = mins - min;
int secs = (int) (fmin * 60.0);
double fsec = (fmin * 60.0) - secs;
int msec = (int) (fsec * 1000.0);
String fs = String.valueOf(fsec);
fs = fs.substring(fs.indexOf(".") + 1, fs.length()).trim();
int f = 0;
if (fs != null && fs.length() > 0) f = Integer.valueOf(fs).intValue();
// sprintf(time_string,"%04d-%02d-%02d %02d:%02d:%02d.%03d",yr,mon,day,hr,min,sec,f);
String frmt =
new String(
"{0,number,####}-{1,number,00}-{2,number,00} {3,number,00}:{4,number,00}:{5,number,00}.{6,number,000}");
MessageFormat msgf = new MessageFormat(frmt);
Object[] objs = {
new Integer(sh.mYear),
new Integer(sh.mMonth),
new Integer(sh.mDay),
new Integer(hour),
new Integer(min),
new Integer(secs),
new Integer(f)
};
StringBuffer out = new StringBuffer();
msgf.format(objs, out, null);
String time_string = new String(out);
date = date + time_string;
timeAxis.addAttribute(0, "units", EPCHAR, date.length(), date);
timeAxis.setUnits(date);
GeoDate gd = null;
try {
gd = new GeoDate(sh.mMonth, sh.mDay, sh.mYear, hour, min, secs, msec);
GeoDate[] ta = {gd};
MultiArray tma = new ArrayMultiArray(ta);
timeAxis.setData(tma);
db.setAxis(timeAxis);
} catch (Exception ex) {
GeoDate[] ta = {new GeoDate()};
MultiArray tma = new ArrayMultiArray(ta);
timeAxis.setData(tma);
db.setAxis(timeAxis);
}
// add the time axes variable
EPSVariable var = new EPSVariable();
var.setOname("time");
var.setDtype(EPDOUBLE);
var.setVclass(Double.TYPE);
var.addAttribute(0, "units", EPCHAR, date.length(), date);
var.setUnits(date);
double[] vta = {0.0};
MultiArray vtma = new ArrayMultiArray(vta);
try {
var.setData(vtma);
} catch (Exception ex) {
}
db.addEPSVariable(var);
// z axis
zAxis.setName("depth");
zAxis.setTime(false);
zAxis.setUnlimited(false);
zAxis.setLen(sh.mNumBottles);
zAxis.setAxisType(EPZAXIS);
zAxis.addAttribute(0, "FORTRAN_format", EPCHAR, 5, "f10.1");
zAxis.addAttribute(1, "units", EPCHAR, 4, "dbar");
zAxis.setUnits("dbar");
zAxis.setFrmt("f10.1");
// zAxis.addAttribute(2, "type", EPCHAR, 0, "");
sarray[0] = 1;
zAxis.addAttribute(2, "epic_code", EPSHORT, 1, sarray);
double[] za = new double[sh.mNumBottles];
for (int b = 0; b < sh.mNumBottles; b++) {
za[b] = va[presPos][b];
}
MultiArray zma = new ArrayMultiArray(za);
zAxis.setData(zma);
db.setAxis(zAxis);
// add the z axes variables
var = new EPSVariable();
var.setOname("depth");
var.setDtype(EPDOUBLE);
var.setVclass(Double.TYPE);
var.addAttribute(0, "FORTRAN_format", EPCHAR, 5, "f10.1");
var.addAttribute(1, "units", EPCHAR, 4, "dbar");
var.setUnits("dbar");
var.setFrmt("f10.1");
// var.addAttribute(2, "type", EPCHAR, 0, "");
sarray[0] = 1;
var.addAttribute(2, "epic_code", EPSHORT, 1, sarray);
MultiArray zvma = new ArrayMultiArray(za);
try {
var.setData(zvma);
} catch (Exception ex) {
}
db.addEPSVariable(var);
// lat axis
latAxis.setName("latitude");
latAxis.setTime(false);
latAxis.setUnlimited(false);
latAxis.setLen(1);
latAxis.setAxisType(EPYAXIS);
latAxis.addAttribute(0, "FORTRAN_format", EPCHAR, 5, "f10.4");
latAxis.addAttribute(1, "units", EPCHAR, 7, "degrees");
latAxis.setUnits("degrees");
latAxis.setFrmt("f10.4");
// latAxis.addAttribute(2, "type", EPCHAR, 0, "");
sarray[0] = 500;
latAxis.addAttribute(2, "epic_code", EPSHORT, 1, sarray);
double lat = sh.mLat;
double[] la = {lat};
MultiArray lma = new ArrayMultiArray(la);
latAxis.setData(lma);
db.setAxis(latAxis);
// add the y axes variable
var = new EPSVariable();
var.setOname("latitude");
var.setDtype(EPDOUBLE);
var.setVclass(Double.TYPE);
var.addAttribute(0, "FORTRAN_format", EPCHAR, 5, "f10.4");
var.addAttribute(1, "units", EPCHAR, 7, "degrees");
var.setUnits("degrees");
var.setFrmt("f10.4");
// var.addAttribute(2, "type", EPCHAR, 0, "");
sarray[0] = 500;
var.addAttribute(2, "epic_code", EPSHORT, 1, sarray);
MultiArray yvma = new ArrayMultiArray(la);
try {
var.setData(yvma);
} catch (Exception ex) {
}
db.addEPSVariable(var);
// lon axis
lonAxis.setName("longitude");
lonAxis.setTime(false);
lonAxis.setUnlimited(false);
lonAxis.setLen(1);
lonAxis.setAxisType(EPXAXIS);
lonAxis.addAttribute(0, "FORTRAN_format", EPCHAR, 5, "f10.4");
lonAxis.addAttribute(1, "units", EPCHAR, 7, "degrees");
lonAxis.setUnits("degrees");
lonAxis.setFrmt("f10.4");
// lonAxis.addAttribute(2, "type", EPCHAR, 0, "");
sarray[0] = 502;
lonAxis.addAttribute(2, "epic_code", EPSHORT, 1, sarray);
double lon = sh.mLon;
double[] lla = {lon};
lma = new ArrayMultiArray(lla);
lonAxis.setData(lma);
db.setAxis(lonAxis);
// add the x axes variable
var = new EPSVariable();
var.setOname("longitude");
var.setDtype(EPDOUBLE);
var.setVclass(Double.TYPE);
var.addAttribute(0, "FORTRAN_format", EPCHAR, 5, "f10.4");
var.addAttribute(1, "units", EPCHAR, 7, "degrees");
var.setUnits("degrees");
var.setFrmt("f10.4");
// var.addAttribute(2, "type", EPCHAR, 0, "");
sarray[0] = 502;
var.addAttribute(2, "epic_code", EPSHORT, 1, sarray);
MultiArray xvma = new ArrayMultiArray(lla);
try {
var.setData(xvma);
} catch (Exception ex) {
}
db.addEPSVariable(var);
// add the measured variables
for (int v = 0; v < sech.mNumVars; v++) {
// if (presPos == v)
// continue;
// create an array of measured EPSVariables for this database
EPSVariable epsVar = new EPSVariable();
// initialize the new EPSVariables
// look this variable up in JOA EPIC_Key. find matching entry in original EPIC Key
String oname = tempProperties[v].mVarLabel;
String sname = null;
String lname = null;
String gname = null;
String units = null;
String ffrmt = null;
int keyID = -99;
int type = -99;
try {
keyID = mEpicKeyDB.findKey(tempProperties[v].mVarLabel);
Key key = mOrigEpicKeyDB.findKey(keyID);
gname = key.getGname();
sname = key.getSname();
lname = key.getLname();
units = key.getUnits();
ffrmt = key.getFrmt();
type = key.getType();
} catch (Exception e) {
lname = tempProperties[v].mVarLabel;
gname = tempProperties[v].mVarLabel;
sname = tempProperties[v].mVarLabel;
units = tempProperties[v].mUnits;
}
// make a new variable
epsVar = new EPSVariable();
epsVar.setOname(oname);
epsVar.setSname(sname);
epsVar.setLname(lname);
epsVar.setGname(gname);
epsVar.setDtype(EPDOUBLE);
epsVar.setVclass(Double.TYPE);
int numAttributes = 0;
if (ffrmt != null) {
epsVar.addAttribute(numAttributes++, "FORTRAN_format", EPCHAR, ffrmt.length(), ffrmt);
epsVar.setFrmt(ffrmt);
}
if (units != null && units.length() > 0) {
epsVar.addAttribute(numAttributes++, "units", EPCHAR, units.length(), units);
epsVar.setUnits(units);
}
if (keyID >= 0) {
sarray[0] = (short) type;
// epsVar.addAttribute(numAttributes++, "type", EPSHORT, 1, sarray);
}
if (keyID >= 0) {
sarray[0] = (short) keyID;
epsVar.addAttribute(numAttributes++, "epic_code", EPSHORT, 1, sarray);
}
// add the quality code attribute
String qcVar = oname + "_QC";
epsVar.addAttribute(numAttributes++, "OBS_QC_VARIABLE", EPCHAR, qcVar.length(), qcVar);
// connect variable to axis
epsVar.setDimorder(0, 0);
epsVar.setDimorder(1, 1);
epsVar.setDimorder(2, 2);
epsVar.setDimorder(3, 3);
epsVar.setT(timeAxis);
epsVar.setZ(zAxis);
epsVar.setY(latAxis);
epsVar.setX(lonAxis);
// set the data
// create storage for the measured variables
double[][][][] vaa = new double[1][sh.mNumBottles][1][1];
for (int b = 0; b < sh.mNumBottles; b++) {
vaa[0][b][0][0] = va[v][b];
}
MultiArray mdma = new ArrayMultiArray(vaa);
try {
epsVar.setData(mdma);
} catch (Exception ex) {
System.out.println("throwing");
}
// add the variable to the database
db.addEPSVariable(epsVar);
// create the quality code variable
epsVar = new EPSVariable();
epsVar.setOname(oname + "_QC");
epsVar.setSname(sname + "_QC");
epsVar.setLname(sname + "_QC");
epsVar.setGname(sname + "_QC");
epsVar.setDtype(EPSHORT);
epsVar.setVclass(Short.TYPE);
// connect variable to axis
epsVar.setDimorder(0, 0);
epsVar.setDimorder(1, 1);
epsVar.setDimorder(2, 2);
epsVar.setDimorder(3, 3);
epsVar.setT(timeAxis);
epsVar.setZ(zAxis);
epsVar.setY(latAxis);
epsVar.setX(lonAxis);
// set the data
// create storage for the qc variables
short[][][][] qcaa = new short[1][sh.mNumBottles][1][1];
for (int b = 0; b < sh.mNumBottles; b++) {
qcaa[0][b][0][0] = (short) qc[v][b];
}
MultiArray qcma = new ArrayMultiArray(qcaa);
try {
epsVar.setData(qcma);
} catch (Exception ex) {
System.out.println("throwing");
}
// add the qc variable to the database
db.addEPSVariable(epsVar);
} // for v
}
mTotalStns += numCasts;
} // for sc
// read the file comments
StringBuffer sb = null;
while (true) {
try {
// read continuation line
inShort = inData.readShort();
bytesRead += 2;
if (inShort == 1) {
// read number of bytes in file description string
inShort = inData.readShort();
bytesRead += 2;
// read the file description String
byte buf2[] = new byte[inShort];
inData.read(buf2, 0, inShort);
String commentLine = new String(buf2);
bytesRead += inShort;
if (sb == null) sb = new StringBuffer(commentLine);
else sb.append(commentLine);
}
} catch (IOException e) {
break;
}
} // while true
if (sb != null) {
// make attributes for the comments
mOwnerDBase.setDataComment(new String(sb));
}
// make a sub database in the dbase
mOwnerDBase.createSubEntries(mTotalStns, mFile.getName());
for (int d = 0; d < mTotalStns; d++) {
Dbase db = (Dbase) dBases.elementAt(d);
mOwnerDBase.addSubEntry(db);
}
mProgress.setPercentComplete(100.0);
mProgress.setVisible(false);
mProgress.dispose();
in.close();
} catch (IOException e) {
mProgress.setVisible(false);
mProgress.dispose();
throw e;
}
}