コード例 #1
0
 private void reportOnWorkflow(
     String workflowAccession, WorkflowRunStatus status, Date earlyDate, Date lateDate)
     throws IOException {
   String title = "";
   if (workflowAccession != null) {
     title = "workflow_" + workflowAccession;
   }
   if (status != null) {
     title += "status_" + status.name();
   }
   if (earlyDate != null) {
     title += "from" + dateFormat.format(earlyDate);
   }
   if (lateDate != null) {
     title += "to" + dateFormat.format(lateDate);
   }
   initWriter(title);
   String report;
   try {
     Integer workflowParameter = null;
     if (workflowAccession != null) {
       workflowParameter = Integer.parseInt(workflowAccession);
     }
     report = metadata.getWorkflowRunReport(workflowParameter, status, earlyDate, lateDate);
   } catch (RuntimeException e) {
     Log.fatal("Workflow not found", e);
     ret = new ReturnValue(ReturnValue.INVALIDPARAMETERS);
     return;
   }
   if (options.has("human")) {
     writer.write(TabExpansionUtil.expansion(report));
     return;
   }
   writer.write(report);
 }
コード例 #2
0
 /** Constructor for WorkflowRunReporter. */
 public WorkflowRunReporter() {
   super();
   parser
       .acceptsAll(Arrays.asList("workflow-run-accession", "wra"), "The SWID of the workflow run")
       .withRequiredArg();
   parser
       .acceptsAll(
           Arrays.asList("workflow-accession", "wa"),
           "The SWID of "
               + "a workflow. All the workflow runs for that workflow will be "
               + "retrieved.")
       .withRequiredArg();
   parser
       .acceptsAll(
           Arrays.asList("time-period", "t"),
           "Dates to check for "
               + "workflow runs. Dates are in format YYYY-MM-DD. If one date is "
               + "provided, from that point to the present is checked. If two, "
               + "separated by hyphen YYYY-MM-DDL:YYYY-MM-DD then it checks "
               + "that range")
       .withRequiredArg();
   parser
       .acceptsAll(Arrays.asList("output-filename", "o"), "Optional: The output filename")
       .withRequiredArg();
   parser.acceptsAll(Arrays.asList("stdout"), "Prints to standard out instead of to a file");
   parser.acceptsAll(
       Arrays.asList(WRSTDOUT),
       "Optional: will print the stdout of the workflow run, must specify the --workflow-run-accession");
   parser.acceptsAll(
       Arrays.asList(WRSTDERR),
       "Optional: will print the stderr of the workflow run, must specify the --workflow-run-accession");
   this.statusSpec =
       parser
           .accepts(
               "status",
               "Optional: Specify a particular status to restrict workflow runs that will be returned, status is one of "
                   + Arrays.toString(WorkflowRunStatus.values()))
           .withRequiredArg()
           .ofType(WorkflowRunStatus.class);
   parser.acceptsAll(
       Arrays.asList("human"), "Optional: will print output in expanded human friendly format");
   ret.setExitStatus(ReturnValue.SUCCESS);
 }