private boolean specimenHasOptions(
HashMap<PathSpecimenContainerDetailVo, OrderInvestigationVoCollection>
specimenAlternateContainers) {
Set<PathSpecimenContainerDetailVo> keys = specimenAlternateContainers.keySet();
for (PathSpecimenContainerDetailVo specimenContainer : keys) {
OrderInvestigationVoCollection values = specimenAlternateContainers.get(specimenContainer);
if (values != null && values.size() > 1) {
for (OrderInvestigationVo investigation : values) {
PathInvDetailsVo pathologyDetails = null;
if (investigation.getInvestigation().getParentInvestigationPathDetails() != null) {
pathologyDetails = investigation.getInvestigation().getParentInvestigationPathDetails();
} else {
pathologyDetails = investigation.getInvestigation().getPathInvDetails();
}
SpecimenVo specimenVo = pathologyDetails.getSpecimens().get(0);
if (specimenVo.getAlternativePaediatricContainers() != null) {
for (SpecimenContainerVo container : specimenVo.getAlternativePaediatricContainers()) {
if (container.getSpecContainer().equals(specimenContainer)) return true;
}
}
}
}
}
return false;
}
private String getInvestigationDisplayText(
OrderInvestigationVo investigation, PathInvDetailsVo pathologyDetails) {
if (investigation == null || pathologyDetails == null)
throw new CodingRuntimeException("Logical error - parameters can't be null");
StringBuilder displayString = new StringBuilder();
displayString.append(investigation.getInvestigation().getInvestigationIndex().getName());
displayString.append(" - ");
displayString.append(
pathologyDetails
.getSpecimens()
.get(0)
.getPaediatricContainers()
.get(0)
.getSpecContainer()
.getName());
displayString
.append(" (")
.append(
pathologyDetails.getSpecimens().get(0).getPaediatricContainers().get(0).getVolume());
displayString.append(" mls)");
return displayString.toString();
}
/**
* Build a hash map with OderSpecimen as key, configured SpecimenContainer as secondary key, and
* OrderInvestigation collection as values
*
* <p>Instead of comparing every specimen container from every investigation with every specimen
* from other investigations, build a hash map with OrderSpecimen primary key, SpecimenContainer
* secondary key and add all investigations from an OrderSpecimen that have SpecimenContainer
* configured. If there are more than one investigation in the collection, then that
* SpecimenContainer is common to more than one investigation for the OrderSpecimen
*/
private HashMap<
OrderSpecimenVo, HashMap<PathSpecimenContainerDetailVo, OrderInvestigationVoCollection>>
buildHashMapOfAlternativeContainers(OrderSpecimenVoCollection myOrderPotentialSpecimens) {
if (myOrderPotentialSpecimens == null || myOrderPotentialSpecimens.size() == 0) return null;
HashMap<OrderSpecimenVo, HashMap<PathSpecimenContainerDetailVo, OrderInvestigationVoCollection>>
generalAlternativeContainers =
new HashMap<
OrderSpecimenVo,
HashMap<PathSpecimenContainerDetailVo, OrderInvestigationVoCollection>>();
for (OrderSpecimenVo specimen : myOrderPotentialSpecimens) {
HashMap<PathSpecimenContainerDetailVo, OrderInvestigationVoCollection>
specimenAlternativeContainers =
new HashMap<PathSpecimenContainerDetailVo, OrderInvestigationVoCollection>();
for (int i = 0; i < specimen.getInvestigations().size(); i++) {
OrderInvestigationVo investigation =
(OrderInvestigationVo)
specimen.getInvestigations().get(i); // Unsafe upcast due to performance reasons
PathInvDetailsVo pathologyDetails = null;
if (investigation.getInvestigation().getParentInvestigationPathDetails() != null) {
pathologyDetails = investigation.getInvestigation().getParentInvestigationPathDetails();
} else {
pathologyDetails = investigation.getInvestigation().getPathInvDetails();
}
SpecimenVo specimenVo = pathologyDetails.getSpecimens().get(0);
PathSpecimenContainerDetailVo pediatricContainer =
specimenVo.getPaediatricContainers().get(0).getSpecContainer();
addSpecimenInvestigationToMap(
specimenAlternativeContainers, investigation, pediatricContainer);
for (SpecimenContainerVo containers : specimenVo.getAlternativePaediatricContainers()) {
addSpecimenInvestigationToMap(
specimenAlternativeContainers, investigation, containers.getSpecContainer());
}
}
generalAlternativeContainers.put(specimen, specimenAlternativeContainers);
}
return generalAlternativeContainers;
}
private float addInvestigationsWithAlternates(
OrderInvestigationRefVoCollection investigations,
grdItemsRow specimenRow,
HashMap<PathSpecimenContainerDetailVo, OrderInvestigationVoCollection>
alternativeContainers) {
if (investigations == null || investigations.size() == 0)
throw new CodingRuntimeException(
"Logical Error - can't choose alternative containers for specimens without investigations");
float totalRequiedVolume = 0;
for (OrderInvestigationRefVo investigationRef : investigations) {
// Upcast - possible error, but done due to performance consideration
OrderInvestigationVo investigation = (OrderInvestigationVo) investigationRef;
// Get investigation pathology details
// Favor parent investigation Pathology Details - this might indicate an add-on investigation
PathInvDetailsVo pathologyDetails = null;
if (investigation.getInvestigation().getParentInvestigationPathDetails() != null) {
pathologyDetails = investigation.getInvestigation().getParentInvestigationPathDetails();
} else {
pathologyDetails = investigation.getInvestigation().getPathInvDetails();
}
// Create child row for OrderInvestigationVo
grdItemsRow investigationRow = specimenRow.getRows().newRow();
// Set investigation name and value to row
investigationRow.setColText(getInvestigationDisplayText(investigation, pathologyDetails));
investigationRow.setValue(investigation);
boolean isPaed = isUsePaedContainer();
if (isPaed) {
// Get specimen from pathology details - implementation only for Simple Investigation
// Revise code when implementing Complex investigations
SpecimenVo specimen = pathologyDetails.getSpecimens().get(0);
// Pediatric container - alternate containers can only be configured for investigations with
// only one pediatric container; any investigation must contain at least one pediatric
// container
SpecimenContainerVo paediatricContainer = specimen.getPaediatricContainers().get(0);
investigationRow
.getColContainer()
.newRow(paediatricContainer, paediatricContainer.getSpecContainer().getName());
investigationRow.getColContainer().setValue(paediatricContainer);
totalRequiedVolume +=
pathologyDetails.getSpecimens().get(0).getPaediatricContainers().get(0).getVolume();
if (specimen.getAlternativePaediatricContainers() != null) {
int addedAlternatives = 0;
for (SpecimenContainerVo alternatePaedContainer :
specimen.getAlternativePaediatricContainers()) {
OrderInvestigationVoCollection orderInvestigations =
alternativeContainers.get(alternatePaedContainer.getSpecContainer());
if (orderInvestigations != null
&& orderInvestigations.size() > 1
&& orderInvestigations.contains(investigation)) {
alternatePaedContainer
.getSpecContainer()
.setAlternativeVol(alternatePaedContainer.getVolume());
investigationRow
.getColContainer()
.newRow(
alternatePaedContainer, alternatePaedContainer.getSpecContainer().getName());
addedAlternatives++;
}
}
investigationRow.setColContainerReadOnly(addedAlternatives == 0);
}
}
}
return totalRequiedVolume;
}