/**
* Edit
*
* @param mapping
* @param form
* @param request
* @param response
* @return
* @throws Exception
*/
public ActionForward edit(
ActionMapping mapping,
ActionForm form,
HttpServletRequest request,
HttpServletResponse response)
throws Exception {
log.debug("<TargetedModificationAction> Entering edit");
if (!isTokenValid(request)) {
return mapping.findForward("failure");
}
// Grab the current modelID from the session
String modelID = (String) request.getSession().getAttribute(Constants.MODELID);
TargetedModificationForm targetedModificationForm = (TargetedModificationForm) form;
// Grab the current SpontaneousMutation we are working with related to
// this
String aTargetedModificationID = targetedModificationForm.getModificationId();
log.debug(
"<TargetedModificationAction save> following Characteristics:"
+ "\n\t getName: "
+ targetedModificationForm.getName()
+ "\n\t getModificationType: "
+ targetedModificationForm.getModificationType()
+ "\n\t getOtherModificationType: "
+ targetedModificationForm.getOtherModificationType()
+ "\n\t getGeneIdentifier: "
+ targetedModificationForm.getGeneIdentifier()
+ "\n\t getEsCellLineName: "
+ targetedModificationForm.getEsCellLineName()
+ "\n\t getBlastocystName: "
+ targetedModificationForm.getBlastocystName()
+ "\n\t getConditionedBy: "
+ targetedModificationForm.getConditionedBy()
+ "\n\t getDescription: "
+ targetedModificationForm.getDescription()
+ "\n\t getComments: "
+ targetedModificationForm.getComments()
+ "\n\t getMgiId: "
+ targetedModificationForm.getMgiId()
+ "\n\t getZfinId: "
+ targetedModificationForm.getZfinId()
+ "\n\t getRgdId: "
+ targetedModificationForm.getRgdId()
+ "\n\t getUrl: "
+ targetedModificationForm.getUrl()
+ "\n\t getTitle: "
+ targetedModificationForm.getTitle()
+ "\n\t getDescriptionOfConstruct: "
+ targetedModificationForm.getDescriptionOfConstruct()
+ "\n\t getConstructSequence(): "
+ targetedModificationForm.getConstructSequence()
+ (String) request.getSession().getAttribute("camod.loggedon.username"));
TargetedModificationManager targetedModificationManager =
(TargetedModificationManager) getBean("targetedModificationManager");
String theAction = (String) request.getParameter(Constants.Parameters.ACTION);
String theForward = "AnimalModelTreePopulateAction";
try {
// retrieve animal model by it's id
AnimalModelManager theAnimalModelManager = (AnimalModelManager) getBean("animalModelManager");
AnimalModel theAnimalModel = theAnimalModelManager.get(modelID);
if ("Delete".equals(theAction)) {
targetedModificationManager.remove(aTargetedModificationID, theAnimalModel);
ActionMessages msg = new ActionMessages();
msg.add(
ActionMessages.GLOBAL_MESSAGE,
new ActionMessage("targetedmodification.delete.successful"));
saveErrors(request, msg);
} else {
TargetedModification theTargetedModification =
targetedModificationManager.get(aTargetedModificationID);
targetedModificationManager.update(
theAnimalModel, targetedModificationForm, theTargetedModification, request);
log.debug("TargetedModification edited");
ActionMessages msg = new ActionMessages();
msg.add(
ActionMessages.GLOBAL_MESSAGE,
new ActionMessage("targetedmodification.edit.successful"));
saveErrors(request, msg);
}
} catch (IllegalArgumentException e) {
log.error("Exception ocurred editing a TargetedModification", e);
theForward = "input";
// Encountered an error saving the model.
ActionMessages msg = new ActionMessages();
msg.add(ActionMessages.GLOBAL_MESSAGE, new ActionMessage("errors.image.unsupportedfiletype"));
saveErrors(request, msg);
} catch (Exception e) {
log.error("Exception occurred creating a TargetedModification", e);
// Encountered an error saving the model.
ActionMessages msg = new ActionMessages();
msg.add(ActionMessages.GLOBAL_MESSAGE, new ActionMessage("errors.admin.message"));
saveErrors(request, msg);
}
log.debug("< TargetedModificationAction> Exiting edit");
resetToken(request);
return mapping.findForward(theForward);
}
/**
* Save
*
* @param mapping
* @param form
* @param request
* @param response
* @return
* @throws Exception
*/
public ActionForward save(
ActionMapping mapping,
ActionForm form,
HttpServletRequest request,
HttpServletResponse response)
throws Exception {
log.debug("<TargetedModificationAction> Entering save");
if (!isTokenValid(request)) {
return mapping.findForward("failure");
}
// Create a form to edit
TargetedModificationForm targetedModificationForm = (TargetedModificationForm) form;
// Grab the current modelID from the session
String theModelId = (String) request.getSession().getAttribute(Constants.MODELID);
log.debug(
"<TargetedModificationAction save> following Characteristics:"
+ "\n\t getName: "
+ targetedModificationForm.getName()
+ "\n\t getModificationType: "
+ targetedModificationForm.getModificationType()
+ "\n\t getOtherModificationType: "
+ targetedModificationForm.getOtherModificationType()
+ "\n\t getGeneIdentifier: "
+ targetedModificationForm.getGeneIdentifier()
+ "\n\t getEsCellLineName: "
+ targetedModificationForm.getEsCellLineName()
+ "\n\t getBlastocystName: "
+ targetedModificationForm.getBlastocystName()
+ "\n\t getConditionedBy: "
+ targetedModificationForm.getConditionedBy()
+ "\n\t getDescription: "
+ targetedModificationForm.getDescription()
+ "\n\t getComments: "
+ targetedModificationForm.getComments()
+ "\n\t getMgiId: "
+ targetedModificationForm.getMgiId()
+ "\n\t getZfinId: "
+ targetedModificationForm.getZfinId()
+ "\n\t getRgdId: "
+ targetedModificationForm.getRgdId()
+ "\n\t getUrl: "
+ targetedModificationForm.getUrl()
+ "\n\t getTitle: "
+ targetedModificationForm.getTitle()
+ "\n\t getDescriptionOfConstruct: "
+ targetedModificationForm.getDescriptionOfConstruct()
+ "\n\t getConstructSequence(): "
+ targetedModificationForm.getConstructSequence()
+ (String) request.getSession().getAttribute("camod.loggedon.username"));
String theForward = "AnimalModelTreePopulateAction";
try {
// retrieve model and update w/ new values
AnimalModelManager theAnimalModelManager = (AnimalModelManager) getBean("animalModelManager");
AnimalModel theAnimalModel = theAnimalModelManager.get(theModelId);
theAnimalModelManager.addGeneticDescription(
theAnimalModel, targetedModificationForm, request);
log.debug("New TargetedModification created");
// Add a message to be displayed in submitOverview.jsp saying you've
// created a new model successfully
ActionMessages msg = new ActionMessages();
msg.add(
ActionMessages.GLOBAL_MESSAGE,
new ActionMessage("targetedmodification.creation.successful"));
saveErrors(request, msg);
} catch (IllegalArgumentException e) {
log.error("Exception ocurred saving a TargetedModification", e);
theForward = "input";
// Encountered an error saving the model.
ActionMessages msg = new ActionMessages();
msg.add(ActionMessages.GLOBAL_MESSAGE, new ActionMessage("errors.image.unsupportedfiletype"));
saveErrors(request, msg);
} catch (Exception e) {
log.error("Exception ocurred creating TargetedModification", e);
// Encountered an error saving the model.
ActionMessages msg = new ActionMessages();
msg.add(ActionMessages.GLOBAL_MESSAGE, new ActionMessage("errors.admin.message"));
saveErrors(request, msg);
}
log.debug("<TargetedModificationAction> Exiting save");
resetToken(request);
return mapping.findForward(theForward);
}