コード例 #1
0
 /**
  * This function populates the availability map with available storage locations.
  *
  * @param form SpecimenArrayAliquotForm
  * @param containerMap Map
  */
 private void populateAliquotsStorageLocations(SpecimenArrayAliquotForm form, Map containerMap) {
   final Map aliquotMap = form.getSpecimenArrayAliquotMap();
   final String noOfAliquots = form.getAliquotCount();
   StorageContainerUtil.populateAliquotMap(
       "SpecimenArray", containerMap, aliquotMap, noOfAliquots);
   form.setSpecimenArrayAliquotMap(aliquotMap);
 }
コード例 #2
0
 /**
  * @param specimenTypeCollection Collection
  * @param form SpecimenArrayAliquotForm
  * @return List : List
  */
 private List setSpecimenTypes(Collection specimenTypeCollection, SpecimenArrayAliquotForm form) {
   final String[] specimenTypeArr = new String[specimenTypeCollection.size()];
   final List specimenTypeList = new ArrayList();
   int i = 0;
   String specimenType = null;
   NameValueBean nameValueBean = null;
   for (final Iterator iter = specimenTypeCollection.iterator(); iter.hasNext(); i++) {
     specimenType = (String) iter.next();
     specimenTypeArr[i] = specimenType;
     nameValueBean = new NameValueBean(specimenType, specimenType);
     specimenTypeList.add(nameValueBean);
   }
   form.setSpecimenTypes(specimenTypeArr);
   return specimenTypeList;
 }
コード例 #3
0
  /**
   * Overrides the executeSecureAction method of SecureAction class.
   *
   * @param mapping object of ActionMapping
   * @param form : actionForm
   * @param request object of HttpServletRequest
   * @param response object of HttpServletResponse
   * @throws Exception generic exception
   * @return ActionForward : ActionForward
   */
  @Override
  public ActionForward executeSecureAction(
      ActionMapping mapping,
      ActionForm form,
      HttpServletRequest request,
      HttpServletResponse response)
      throws Exception {
    DAO dao = null;
    String pageOf = null;
    try {
      final SessionDataBean sessionDataBean =
          (SessionDataBean) request.getSession().getAttribute(Constants.SESSION_DATA);
      dao = AppUtility.openDAOSession(sessionDataBean);
      final SpecimenArrayAliquotForm specimenArrayAliquotForm = (SpecimenArrayAliquotForm) form;
      pageOf = request.getParameter(Constants.PAGE_OF);
      final StorageContainerForSpArrayBizLogic bizLogic = new StorageContainerForSpArrayBizLogic();
      final SessionDataBean sessionData =
          (SessionDataBean) request.getSession().getAttribute(Constants.SESSION_DATA);
      final List<NameValueBean> storagePositionListForSpecimenArrayAliquot =
          AppUtility.getStoragePositionTypeListForTransferEvent();
      request.setAttribute(
          "storagePositionListForSpecimenArrayAliquot", storagePositionListForSpecimenArrayAliquot);
      final String exceedingMaxLimit = "false";
      if (specimenArrayAliquotForm.getButtonClicked().equalsIgnoreCase("submit")) {
        final Map tempAliquotMap = new HashMap();
        if (specimenArrayAliquotForm.getCheckedButton().equals("1")) {
          tempAliquotMap.put("label", specimenArrayAliquotForm.getParentSpecimenArrayLabel());
        } else {
          tempAliquotMap.put("barcode", specimenArrayAliquotForm.getBarcode());
        }
        tempAliquotMap.put("aliquotcount", specimenArrayAliquotForm.getAliquotCount());
        request.getSession().setAttribute("tempAliquotMap", tempAliquotMap);
      } else if (specimenArrayAliquotForm.getButtonClicked().equalsIgnoreCase("create")) {
        boolean arePropertiesChanged = false;
        final Map tempAliquotMap = (HashMap) request.getSession().getAttribute("tempAliquotMap");
        final String label = (String) tempAliquotMap.get("label");
        final String barcode = (String) tempAliquotMap.get("barcode");
        if (specimenArrayAliquotForm.getCheckedButton().equals("1")) {
          if (label == null
              || !label
                  .trim()
                  .equalsIgnoreCase(
                      specimenArrayAliquotForm.getParentSpecimenArrayLabel().trim())) {
            arePropertiesChanged = true;
          }
        } else {
          if (barcode == null
              || !barcode.trim().equalsIgnoreCase(specimenArrayAliquotForm.getBarcode().trim())) {
            arePropertiesChanged = true;
          }
        }
        final String aliquotcount = (String) tempAliquotMap.get("aliquotcount");
        if (!aliquotcount
            .trim()
            .equalsIgnoreCase(specimenArrayAliquotForm.getAliquotCount().trim())) {
          arePropertiesChanged = true;
        }

        /**
         * Repopulate the form with storage container locations in case user has changed any of
         * label/barcode, aliquot count, quantity per aliquot.
         */
        if (arePropertiesChanged == true) {
          specimenArrayAliquotForm.setParentSpecimenArrayLabel(label);
          specimenArrayAliquotForm.setAliquotCount(aliquotcount);
          specimenArrayAliquotForm.setBarcode(barcode);

          ActionErrors errors = this.getActionErrors(request);

          if (errors == null) {
            errors = new ActionErrors();
          }
          if (arePropertiesChanged == true) {
            errors.add(
                ActionErrors.GLOBAL_ERROR,
                new ActionError("errors.specimenArrayAliquots.reSubmit"));
          }

          TreeMap containerMap = new TreeMap();
          this.checkForSpecimenArray(request, specimenArrayAliquotForm, dao);
          // int aliquotCount =
          // Integer.parseInt(specimenArrayAliquotForm.getAliquotCount());
          final Long id = (Long) request.getAttribute(Constants.STORAGE_TYPE_ID);
          containerMap =
              bizLogic.getAllocatedContainerMapForSpecimenArray(id.longValue(), sessionData, dao);
          this.populateAliquotsStorageLocations(specimenArrayAliquotForm, containerMap);
          request.setAttribute(Constants.AVAILABLE_CONTAINER_MAP, containerMap);
          request.setAttribute(Constants.PAGE_OF, Constants.PAGE_OF_SPECIMEN_ARRAY_CREATE_ALIQUOT);
          this.saveErrors(request, errors);
          return mapping.findForward(Constants.PAGE_OF_SPECIMEN_ARRAY_CREATE_ALIQUOT);

        } else {
          // TODO
          specimenArrayAliquotForm.setButtonClicked("none");
          return mapping.findForward(Constants.COMMON_ADD_EDIT);
        }
      }

      if (Constants.PAGE_OF_SPECIMEN_ARRAY_ALIQUOT_SUMMARY.equals(pageOf)) {
        final Map map = (Map) request.getAttribute("forwardToHashMap");

        if (map != null) {
          // TODO
          specimenArrayAliquotForm.setSpecimenClass(
              CommonUtilities.toString(map.get(Constants.ALIQUOT_SPECIMEN_CLASS)));
          specimenArrayAliquotForm.setSpecimenArrayType(
              CommonUtilities.toString(map.get(Constants.ALIQUOT_SPECIMEN_ARRAY_TYPE)));
          specimenArrayAliquotForm.setAliquotCount(
              CommonUtilities.toString(map.get(Constants.ALIQUOT_ALIQUOT_COUNTS)));
          final Collection specimenTypesCollection =
              (Collection) map.get(Constants.ALIQUOT_SPECIMEN_TYPES);
          final List specimenTypeList =
              this.setSpecimenTypes(specimenTypesCollection, specimenArrayAliquotForm);
          request.setAttribute(Constants.SPECIMEN_TYPE_LIST, specimenTypeList);
          String containerNameKey = "";
          String posDim1Key = "";
          String posDim2Key = "";
          /** This code is added to set storage positions in case of manual mode. bug 15085 */
          for (int iCount = 1;
              iCount <= Integer.parseInt(specimenArrayAliquotForm.getAliquotCount());
              iCount++) {
            if (map.get("radio_" + iCount) != null && map.get("radio_" + iCount).equals("2")) {
              containerNameKey = "SpecimenArray:" + iCount + "_StorageContainer_name";
              posDim1Key = "SpecimenArray:" + iCount + "_positionDimensionOne";
              posDim2Key = "SpecimenArray:" + iCount + "_positionDimensionTwo";
              map.put(containerNameKey, map.get(containerNameKey + "_fromMap"));
              if (!map.get(posDim1Key + "_fromMap").equals("")) {
                map.put(posDim1Key, map.get(posDim1Key + "_fromMap"));
              }
              if (!map.get(posDim2Key + "_fromMap").equals("")) {
                map.put(posDim2Key, map.get(posDim2Key + "_fromMap"));
              }
            }
          }
          specimenArrayAliquotForm.setSpecimenArrayAliquotMap(map);
        }

        final ActionErrors errors = this.getActionErrors(request);

        if (errors == null || errors.size() == 0) {
          final ActionMessages messages = new ActionMessages();
          messages.add(ActionMessages.GLOBAL_MESSAGE, new ActionMessage("aliquots.success"));
          this.saveMessages(request, messages);
        }
        return mapping.findForward(pageOf);
      }

      Map containerMap = new HashMap();
      if (Constants.PAGE_OF_SPECIMEN_ARRAY_CREATE_ALIQUOT.equals(
          request.getParameter(Constants.PAGE_OF))) {
        pageOf = this.validate(request, specimenArrayAliquotForm);

        if (Constants.PAGE_OF_SPECIMEN_ARRAY_CREATE_ALIQUOT.equals(pageOf)) {
          pageOf = this.checkForSpecimenArray(request, specimenArrayAliquotForm, dao);

          if (Constants.PAGE_OF_SPECIMEN_ARRAY_CREATE_ALIQUOT.equals(pageOf)) {
            final int aliquotCount = Integer.parseInt(specimenArrayAliquotForm.getAliquotCount());
            final Long id = (Long) request.getAttribute(Constants.STORAGE_TYPE_ID);
            containerMap =
                bizLogic.getAllocatedContainerMapForSpecimenArray(id.longValue(), sessionData, dao);
            pageOf = this.checkForSufficientAvailablePositions(request, containerMap, aliquotCount);

            if (Constants.PAGE_OF_SPECIMEN_ARRAY_CREATE_ALIQUOT.equals(pageOf)) {
              final ActionErrors errors = (ActionErrors) request.getAttribute(Globals.ERROR_KEY);
              if (errors == null || errors.size() == 0) {
                this.populateAliquotsStorageLocations(specimenArrayAliquotForm, containerMap);
              }
            }
          }
        }
      }
      request.setAttribute(Constants.EXCEEDS_MAX_LIMIT, exceedingMaxLimit);
      request.setAttribute(Constants.AVAILABLE_CONTAINER_MAP, containerMap);
      request.setAttribute(Constants.PAGE_OF, pageOf);
    } finally {
      dao.closeSession();
    }
    return mapping.findForward(pageOf);
  }
コード例 #4
0
  /**
   * @param request HttpServletRequest
   * @param form SpecimenArrayAliquotForm
   * @return String : String
   * @throws BizLogicException : BizLogicException
   * @throws Exception : Exception
   */
  private String checkForSpecimenArray(
      HttpServletRequest request, SpecimenArrayAliquotForm form, DAO dao)
      throws BizLogicException, Exception {
    List specimenArrayList = new ArrayList();
    String errorString = "";
    final String specimenArrayLabel = form.getParentSpecimenArrayLabel();
    final int aliquotCount = Integer.parseInt(form.getAliquotCount());
    if (form.getCheckedButton().equals("1")) {

      specimenArrayList =
          dao.retrieve(SpecimenArray.class.getName(), Constants.SYSTEM_NAME, specimenArrayLabel);
      errorString = Constants.SYSTEM_LABEL;
    } else {
      final String barcode = form.getBarcode().trim();
      specimenArrayList =
          dao.retrieve(SpecimenArray.class.getName(), Constants.SYSTEM_BARCODE, barcode);
      errorString = Constants.SYSTEM_BARCODE;
    }

    if (specimenArrayList.isEmpty()) {
      final ActionErrors errors = this.getActionErrors(request);
      errors.add(
          ActionErrors.GLOBAL_ERROR,
          new ActionError("errors.specimenArrayAliquots.notExists", errorString));
      this.saveErrors(request, errors);
      return Constants.PAGE_OF_SPECIMEN_ARRAY_ALIQUOT;
    } else {
      final SpecimenArray specimenArray = (SpecimenArray) specimenArrayList.get(0);
      /**
       * Name : Virender Reviewer: Prafull Retriving specimenArrayTypeObject replaced
       * SpecimenArrayType arrayType = specimenArray.getSpecimenArrayType();
       */
      if (Status.ACTIVITY_STATUS_DISABLED.toString().equals(specimenArray.getActivityStatus())) {
        final ActionErrors errors = this.getActionErrors(request);
        errors.add(
            ActionErrors.GLOBAL_ERROR,
            new ActionError("errors.specimenArrayAliquots.disabled", "Parent Specimen Array"));
        this.saveErrors(request, errors);
        return Constants.PAGE_OF_SPECIMEN_ARRAY_ALIQUOT;
        // throw BizLogicException(
        // "Fail to create Aliquots, Parent SpecimenArray" + " " +
        // ApplicationProperties.getValue("error.object.disabled"));
      }
      final List arrayTypeList =
          dao.retrieveAttribute(
              SpecimenArray.class, "id", specimenArray.getId(), "specimenArrayType");
      if ((arrayTypeList != null) && (arrayTypeList.size() > 0)) {
        final SpecimenArrayType arrayType = (SpecimenArrayType) arrayTypeList.get(0);
        form.setSpecimenArrayType(arrayType.getName());
        form.setSpecimenClass(arrayType.getSpecimenClass());

        /**
         * Name: Virender Mehta Reviewer: Prafull Retrive Child Specimen Collection from parent
         * Specimen String[] specimenTypeArr = new
         * String[arrayType.getSpecimenTypeCollection().size()];
         */
        final Collection specimenTypeCollection =
            dao.retrieveAttribute(
                SpecimenArrayType.class,
                "id",
                arrayType.getId(),
                "elements(specimenTypeCollection)");
        // String[] specimenTypeArr = new
        // String[specimenTypeCollection.size()];

        final List specimenTypeList = this.setSpecimenTypes(specimenTypeCollection, form);
        request.setAttribute(Constants.SPECIMEN_TYPE_LIST, specimenTypeList);

        request.setAttribute(Constants.STORAGE_TYPE_ID, arrayType.getId());

        final Map aliquotMap = form.getSpecimenArrayAliquotMap();

        final SpecimenArrayAliquotsBizLogic aliquotBizLogic =
            (SpecimenArrayAliquotsBizLogic)
                AbstractFactoryConfig.getInstance()
                    .getBizLogicFactory()
                    .getBizLogic(Constants.SPECIMEN_ARRAY_ALIQUOT_FORM_ID);
        final long nextAvailablenumber =
            aliquotBizLogic.getNextAvailableNumber("CATISSUE_SPECIMEN_ARRAY");

        /** Putting the default label values in the AliquotMap */
        for (int i = 1; i <= aliquotCount; i++) {

          final String labelKey = "SpecimenArray:" + i + "_label";
          final String aliquotLabel = specimenArrayLabel + "_" + (nextAvailablenumber + i - 1);
          aliquotMap.put(labelKey, aliquotLabel);
        }

        form.setSpecimenArrayAliquotMap(aliquotMap);
        form.setSpecimenArrayId("" + specimenArray.getId());
      }
    }

    return Constants.PAGE_OF_SPECIMEN_ARRAY_CREATE_ALIQUOT;
  }