@Test(expected = JargonException.class)
public void testCreateBundleNoOverwriteCollectionDoesNotExist() throws Exception {
String tarName = "testCreateBundleNoOverwriteCollectionDoesNotExist.tar";
String testSubdir = "testCreateBundleNoOverwriteCollectionDoesNotExist";
String bunSubdir = "testCreateBundleNoOverwriteCollectionDoesNotExistBunSubdir";
IRODSAccount irodsAccount =
testingPropertiesHelper.buildIRODSAccountFromTestProperties(testingProperties);
IRODSFile irodsFile = null;
String targetBunIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + "/" + bunSubdir);
String targetBunFileAbsPath = targetBunIrodsCollection + "/" + tarName;
irodsFile = new IRODSFile(irodsFileSystem, targetBunIrodsCollection);
irodsFile.mkdir();
String targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + "/" + testSubdir);
IRODSAccessObjectFactory accessObjectFactory =
IRODSAccessObjectFactoryImpl.instance(irodsFileSystem.getCommands());
BulkFileOperationsAO bulkFileOperationsAO = accessObjectFactory.getBulkFileOperationsAO();
bulkFileOperationsAO.createABundleFromIrodsFilesAndStoreInIrods(
targetBunFileAbsPath, targetIrodsCollection, "");
}
@Test(expected = JargonException.class)
public void testExtractBundleNoOverwriteNoBulkWhenTargetCollectionAlreadyExists()
throws Exception {
// gets a SYS_COPY_ALREADY_IN_RESC -46000
String tarName = "testExtractBundleNoOverwriteNoBulkWhenTargetCollectionAlreadyExists.tar";
String testSubdir = "testExtractBundleNoOverwriteNoBulkWhenTargetCollectionAlreadyExists";
String bunSubdir =
"testExtractBundleNoOverwriteNoBulkWhenTargetCollectionAlreadyExistsBunSubdir";
String testExtractTargetSubdir =
"testExtractBundleNoOverwriteNoBulkWhenTargetCollectionAlreadyExistsTargetCollection";
String fileName = "fileName.txt";
int count = 5;
IRODSAccount irodsAccount =
testingPropertiesHelper.buildIRODSAccountFromTestProperties(testingProperties);
IRODSFile irodsFile = null;
String targetBunIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + "/" + bunSubdir);
String targetBunFileAbsPath = targetBunIrodsCollection + "/" + tarName;
irodsFile = new IRODSFile(irodsFileSystem, targetBunIrodsCollection);
irodsFile.mkdir();
String targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + "/" + testSubdir);
irodsFile = new IRODSFile(irodsFileSystem, targetIrodsCollection);
irodsFile.mkdir();
String myTarget = "";
for (int i = 0; i < count; i++) {
myTarget = targetIrodsCollection + "/c" + (10000 + i) + fileName;
irodsFile = new IRODSFile(irodsFileSystem, myTarget);
irodsFile.createNewFile();
}
IRODSAccessObjectFactory accessObjectFactory =
IRODSAccessObjectFactoryImpl.instance(irodsFileSystem.getCommands());
BulkFileOperationsAO bulkFileOperationsAO = accessObjectFactory.getBulkFileOperationsAO();
bulkFileOperationsAO.createABundleFromIrodsFilesAndStoreInIrods(
targetBunFileAbsPath, targetIrodsCollection, "");
// extract the bun file now to a different subdir
targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + "/" + testExtractTargetSubdir);
bulkFileOperationsAO.extractABundleIntoAnIrodsCollection(
targetBunFileAbsPath, targetIrodsCollection, "");
// repeat the same operation, causing an overwrite situation, should get
// an error
bulkFileOperationsAO.extractABundleIntoAnIrodsCollection(
targetBunFileAbsPath, targetIrodsCollection, "");
}
@BeforeClass
public static void setUpBeforeClass() throws Exception {
TestingPropertiesHelper testingPropertiesLoader = new TestingPropertiesHelper();
testingProperties = testingPropertiesLoader.getTestProperties();
irodsTestSetupUtilities = new IRODSTestSetupUtilities();
irodsTestSetupUtilities.initializeIrodsScratchDirectory();
irodsTestSetupUtilities.initializeDirectoryForTest(IRODS_COMMAND_TEST_PATH);
}
@Test
public void testCreateBundleNoOverwriteCollectionExists() throws Exception {
String tarName = "testCreateBundleNoOverwriteCollectionExists.tar";
String testSubdir = "testCreateBundleNoOverwriteCollectionExists";
String bunSubdir = "testCreateBundleNoOverwriteCollectionExistsBunSubdir";
String fileName = "fileName";
int count = 200;
IRODSAccount irodsAccount =
testingPropertiesHelper.buildIRODSAccountFromTestProperties(testingProperties);
IRODSFile irodsFile = null;
String targetBunIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + "/" + bunSubdir);
String targetBunFileAbsPath = targetBunIrodsCollection + "/" + tarName;
irodsFile = new IRODSFile(irodsFileSystem, targetBunIrodsCollection);
irodsFile.mkdir();
String targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + "/" + testSubdir);
irodsFile = new IRODSFile(irodsFileSystem, targetIrodsCollection);
irodsFile.mkdir();
String myTarget = "";
for (int i = 0; i < count; i++) {
myTarget = targetIrodsCollection + "/c" + (10000 + i) + fileName;
irodsFile = new IRODSFile(irodsFileSystem, myTarget);
irodsFile.createNewFile();
}
IRODSAccessObjectFactory accessObjectFactory =
IRODSAccessObjectFactoryImpl.instance(irodsFileSystem.getCommands());
IRODSServerProperties props = irodsFileSystem.getCommands().getIrodsServerProperties();
if (!props.isTheIrodsServerAtLeastAtTheGivenReleaseVersion(
RemoteExecuteServiceImpl.STREAMING_API_CUTOFF)) {
return;
}
BulkFileOperationsAO bulkFileOperationsAO = accessObjectFactory.getBulkFileOperationsAO();
boolean didFail = false;
try {
bulkFileOperationsAO.createABundleFromIrodsFilesAndStoreInIrods(
targetBunFileAbsPath, targetIrodsCollection, "");
bulkFileOperationsAO.createABundleFromIrodsFilesAndStoreInIrods(
targetBunFileAbsPath, targetIrodsCollection, "");
} catch (JargonException je) {
didFail = true;
}
TestCase.assertTrue("expected this to fail with JargonException", didFail);
}
@Test
public void testCreateBundleWhenTarFileAlreadyExistsForceSpecified() throws Exception {
String tarName = "testCreateBundleWhenTarFileAlreadyExistsForceSpecified.tar";
String testSubdir = "testCreateBundleWhenTarFileAlreadyExistsForceSpecified";
String bunSubdir = "testCreateBundleWhenTarFileAlreadyExistsForceSpecifiedBunSubdir";
String fileName = "fileName";
int count = 20;
IRODSAccount irodsAccount =
testingPropertiesHelper.buildIRODSAccountFromTestProperties(testingProperties);
IRODSServerProperties props = irodsFileSystem.getCommands().getIrodsServerProperties();
if (!props.isTheIrodsServerAtLeastAtTheGivenReleaseVersion(
RemoteExecuteServiceImpl.STREAMING_API_CUTOFF)) {
return;
}
IRODSFile irodsFile = null;
String targetBunIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + "/" + bunSubdir);
String targetBunFileAbsPath = targetBunIrodsCollection + "/" + tarName;
irodsFile = new IRODSFile(irodsFileSystem, targetBunIrodsCollection);
irodsFile.mkdir();
// create the tar file with the same name as the one I will want to
// create later
irodsFile = new IRODSFile(irodsFileSystem, targetBunFileAbsPath);
irodsFile.createNewFile();
String targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + "/" + testSubdir);
irodsFile = new IRODSFile(irodsFileSystem, targetIrodsCollection);
irodsFile.mkdir();
String myTarget = "";
for (int i = 0; i < count; i++) {
myTarget = targetIrodsCollection + "/c" + (10000 + i) + fileName;
irodsFile = new IRODSFile(irodsFileSystem, myTarget);
irodsFile.createNewFile();
}
IRODSAccessObjectFactory accessObjectFactory =
IRODSAccessObjectFactoryImpl.instance(irodsFileSystem.getCommands());
BulkFileOperationsAO bulkFileOperationsAO = accessObjectFactory.getBulkFileOperationsAO();
bulkFileOperationsAO.createABundleFromIrodsFilesAndStoreInIrodsWithForceOption(
targetBunFileAbsPath, targetIrodsCollection, "");
assertionHelper.assertIrodsFileOrCollectionExists(targetBunFileAbsPath);
}
@BeforeClass
public static void setUpBeforeClass() throws Exception {
TestingPropertiesHelper testingPropertiesLoader = new TestingPropertiesHelper();
testingProperties = testingPropertiesLoader.getTestProperties();
scratchFileUtils = new ScratchFileUtils(testingProperties);
scratchFileUtils.clearAndReinitializeScratchDirectory(IRODS_TEST_SUBDIR_PATH);
irodsTestSetupUtilities = new IRODSTestSetupUtilities();
irodsTestSetupUtilities.initializeIrodsScratchDirectory();
irodsTestSetupUtilities.initializeDirectoryForTest(IRODS_TEST_SUBDIR_PATH);
assertionHelper = new AssertionHelper();
IRODSAccount irodsAccount =
testingPropertiesHelper.buildIRODSAccountFromTestProperties(testingProperties);
irodsFileSystem = new IRODSFileSystem(irodsAccount);
}
@Test(expected = JargonException.class)
public void testCreateBundleWhenTarFileAlreadyExists() throws Exception {
String tarName = "testCreateBundleWhenTarFileAlreadyExists.tar";
String testSubdir = "testCreateBundleWhenTarFileAlreadyExists";
String bunSubdir = "testCreateBundleWhenTarFileAlreadyExistsBunSubdir";
String fileName = "fileName";
int count = 20;
IRODSAccount irodsAccount =
testingPropertiesHelper.buildIRODSAccountFromTestProperties(testingProperties);
IRODSFile irodsFile = null;
String targetBunIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + "/" + bunSubdir);
String targetBunFileAbsPath = targetBunIrodsCollection + "/" + tarName;
irodsFile = new IRODSFile(irodsFileSystem, targetBunIrodsCollection);
irodsFile.mkdir();
// create the tar file with the same name as the one I will want to
// create later
irodsFile = new IRODSFile(irodsFileSystem, targetBunFileAbsPath);
irodsFile.createNewFile();
String targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + "/" + testSubdir);
irodsFile = new IRODSFile(irodsFileSystem, targetIrodsCollection);
irodsFile.mkdir();
String myTarget = "";
for (int i = 0; i < count; i++) {
myTarget = targetIrodsCollection + "/c" + (10000 + i) + fileName;
irodsFile = new IRODSFile(irodsFileSystem, myTarget);
irodsFile.createNewFile();
}
IRODSAccessObjectFactory accessObjectFactory =
IRODSAccessObjectFactoryImpl.instance(irodsFileSystem.getCommands());
BulkFileOperationsAO bulkFileOperationsAO = accessObjectFactory.getBulkFileOperationsAO();
bulkFileOperationsAO.createABundleFromIrodsFilesAndStoreInIrods(
targetBunFileAbsPath, targetIrodsCollection, "");
}
@Test(expected = IllegalArgumentException.class)
public void testCreateBundleNoOverwriteCollectionExistsBlankBun() throws Exception {
IRODSAccount irodsAccount =
testingPropertiesHelper.buildIRODSAccountFromTestProperties(testingProperties);
IRODSAccessObjectFactory accessObjectFactory =
IRODSAccessObjectFactoryImpl.instance(irodsFileSystem.getCommands());
BulkFileOperationsAO bulkFileOperationsAO = accessObjectFactory.getBulkFileOperationsAO();
bulkFileOperationsAO.createABundleFromIrodsFilesAndStoreInIrods("", "target", "");
}
/**
* Test method for {@link org.irods.jargon.icommandinvoke.icommands.ImkdirCommand#buildCommand()}
* .
*/
@Test
public void testExecMkdirCommand() throws Exception {
ImkdirCommand command = new ImkdirCommand();
String testingDirName = "mkdir-test";
command.setCollectionName(
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, testingDirName));
IrodsInvocationContext invocationContext =
testingPropertiesHelper.buildIRODSInvocationContextFromTestProperties(testingProperties);
IcommandInvoker invoker = new IcommandInvoker(invocationContext);
invoker.invokeCommandAndGetResultAsString(command);
// use an ils command to see if the dir now exists
IlsCommand ilsCommand = new IlsCommand();
ilsCommand.setIlsBasePath(
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, testingDirName));
String ilsResult = invoker.invokeCommandAndGetResultAsString(ilsCommand);
Assert.assertTrue("test directory is not there", ilsResult.indexOf(testingDirName) > -1);
}
/*
* the semantics of how 'data not found' is treated in this version of
* jargon is different than how it is treated in jargon-core at the
* connection level, that makes detection of this error difficult. For the
* time being, semantic changes in the interpretation of this condition are
* to be avoided.
*/
@Ignore
public void testExtractBundleNoOverwriteWithBulkSpecifyWrongResource() throws Exception {
String tarName = "testExtractBundleNoOverwriteWithBulkSpecifyWrongResource.tar";
String testSubdir = "testExtractBundleNoOverwriteWithBulkSpecifyWrongResource";
String bunSubdir = "testExtractBundleNoOverwriteWithBulkSpecifyWrongResourceBunSubdir";
String testExtractTargetSubdir =
"testExtractBundleNoOverwriteWithBulkSpecifyWrongResourceTargetCollection";
String testResource = testingProperties.getProperty(TestingPropertiesHelper.IRODS_RESOURCE_KEY);
String fileName = "fileName.txt";
int count = 5;
IRODSAccount irodsAccount =
testingPropertiesHelper.buildIRODSAccountFromTestProperties(testingProperties);
IRODSFile irodsFile = null;
String targetBunIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + "/" + bunSubdir);
String targetBunFileAbsPath = targetBunIrodsCollection + "/" + tarName;
irodsFile = new IRODSFile(irodsFileSystem, targetBunIrodsCollection);
irodsFile.mkdir();
String targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + "/" + testSubdir);
irodsFile = new IRODSFile(irodsFileSystem, targetIrodsCollection);
irodsFile.mkdir();
String myTarget = "";
for (int i = 0; i < count; i++) {
myTarget = targetIrodsCollection + "/c" + (10000 + i) + fileName;
irodsFile = new IRODSFile(irodsFileSystem, myTarget);
irodsFile.createNewFile();
}
IRODSAccessObjectFactory accessObjectFactory =
IRODSAccessObjectFactoryImpl.instance(irodsFileSystem.getCommands());
BulkFileOperationsAO bulkFileOperationsAO = accessObjectFactory.getBulkFileOperationsAO();
bulkFileOperationsAO.createABundleFromIrodsFilesAndStoreInIrods(
targetBunFileAbsPath, targetIrodsCollection, testResource);
// extract the bun file now to a different subdir
targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + "/" + testExtractTargetSubdir);
IRODSFile extractSubdir = new IRODSFile(irodsFileSystem, targetIrodsCollection);
extractSubdir.mkdirs();
bulkFileOperationsAO.extractABundleIntoAnIrodsCollectionWithBulkOperationOptimization(
targetBunFileAbsPath,
targetIrodsCollection,
testingProperties.getProperty(TestingPropertiesHelper.IRODS_SECONDARY_RESOURCE_KEY));
IRODSFile targetColl = new IRODSFile(irodsFileSystem, targetIrodsCollection);
targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + "/" + testSubdir);
IRODSFile sourceColl = new IRODSFile(irodsFileSystem, targetIrodsCollection);
// assertionHelper.assertTwoFilesAreEqualByRecursiveTreeComparison(
// sourceColl, targetColl);
}
@Test
public void testExtractBundleNoOverwriteWithBulk() throws Exception {
String tarName = "testExtractBundleNoOverwriteWithBulk.tar";
String testSubdir = "testExtractBundleNoOverwriteWithBulk";
String bunSubdir = "testExtractBundleNoOverwriteWithBulkBunSubdir";
String testExtractTargetSubdir = "testExtractBundleNoOverwriteWithBulkTargetCollection";
String fileName = "fileName.txt";
int count = 5;
IRODSServerProperties props = irodsFileSystem.getCommands().getIrodsServerProperties();
if (!props.isTheIrodsServerAtLeastAtTheGivenReleaseVersion(
RemoteExecuteServiceImpl.STREAMING_API_CUTOFF)) {
return;
}
IRODSFile irodsFile = null;
String targetBunIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + "/" + bunSubdir);
String targetBunFileAbsPath = targetBunIrodsCollection + "/" + tarName;
irodsFile = new IRODSFile(irodsFileSystem, targetBunIrodsCollection);
irodsFile.mkdir();
String targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + "/" + testSubdir);
irodsFile = new IRODSFile(irodsFileSystem, targetIrodsCollection);
irodsFile.mkdir();
String myTarget = "";
for (int i = 0; i < count; i++) {
myTarget = targetIrodsCollection + "/c" + (10000 + i) + fileName;
irodsFile = new IRODSFile(irodsFileSystem, myTarget);
irodsFile.createNewFile();
}
IRODSAccessObjectFactory accessObjectFactory =
IRODSAccessObjectFactoryImpl.instance(irodsFileSystem.getCommands());
BulkFileOperationsAO bulkFileOperationsAO = accessObjectFactory.getBulkFileOperationsAO();
bulkFileOperationsAO.createABundleFromIrodsFilesAndStoreInIrods(
targetBunFileAbsPath, targetIrodsCollection, "");
// extract the bun file now to a different subdir
targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + "/" + testExtractTargetSubdir);
bulkFileOperationsAO.extractABundleIntoAnIrodsCollectionWithBulkOperationOptimization(
targetBunFileAbsPath, targetIrodsCollection, "");
IRODSFile targetColl = new IRODSFile(irodsFileSystem, targetIrodsCollection);
targetIrodsCollection =
testingPropertiesHelper.buildIRODSCollectionAbsolutePathFromTestProperties(
testingProperties, IRODS_TEST_SUBDIR_PATH + "/" + testSubdir);
IRODSFile sourceColl = new IRODSFile(irodsFileSystem, targetIrodsCollection);
// assertionHelper.assertTwoFilesAreEqualByRecursiveTreeComparison(
// sourceColl, targetColl);
}