private void writeVertices(ValidateNETFile vmf, PrintWriter pw) {
pw.write(MATFileProperty.HEADER_VERTICES + " " + vmf.getVertices().size() + "\n");
for (int i = 0; i < vmf.getVertices().size(); i++) {
NETVertex mv = (NETVertex) vmf.getVertices().get(i);
String s = "";
for (int j = 0; j < NETVertex.getVertexAttributes().size(); j++) {
try {
NETAttribute ma = (NETAttribute) NETVertex.getVertexAttributes().get(j);
String attr = ma.getAttrName();
String type = ma.getDataType();
String value = mv.getAttribute(attr).toString();
if (value == null) {
s += "";
} else {
if (NETFileFunctions.isInList(attr, noPrintParameters)) {
if (type.equalsIgnoreCase("string")) s += "\"" + mv.getAttribute(attr) + "\" ";
else s += mv.getAttribute(attr) + " ";
} else {
if (type.equalsIgnoreCase("string")) {
if (attr.startsWith("unknown")) s += " \"" + mv.getAttribute(attr) + "\" ";
else s += attr + " \"" + mv.getAttribute(attr) + "\" ";
} else s += attr + " " + mv.getAttribute(attr) + " ";
}
}
} catch (NullPointerException ex) {
s += "";
}
}
// System.out.println(s);
pw.println(s);
}
// System.out.println("done here");
}
private void writeUndirectedMatrix(ValidateNETFile vmf, PrintWriter pw) {
NETVertex nvi;
NETVertex nvj;
// float[][] matrix = new float[vmf.getVertices().size()][vmf.getVertices().size()];
NETArcsnEdges nae;
int source, target;
float weight = (float) 0.0;
// System.out.println(vmf.getEdges().size());
pw.println(MATFileProperty.HEADER_MATRIX);
for (int i = 0; i < vmf.getVertices().size(); i++) {
nvi = (NETVertex) vmf.getVertices().get(i);
for (int j = 0; j < vmf.getVertices().size(); j++) {
nvj = (NETVertex) vmf.getVertices().get(j);
for (int k = 0; k < vmf.getEdges().size(); k++) {
nae = (NETArcsnEdges) vmf.getEdges().get(k);
target = ((Integer) nae.getAttribute(NETFileProperty.ATTRIBUTE_TARGET)).intValue();
source = ((Integer) nae.getAttribute(NETFileProperty.ATTRIBUTE_SOURCE)).intValue();
// System.out.println(nvi.getID() + ":"+ source + "\t" + nvj.getID()+":"+target);
if (((nvi.getID() == source) && (nvj.getID() == target))
|| ((nvi.getID() == target) && (nvj.getID() == source))) {
weight = ((Float) nae.getAttribute(NETFileProperty.ATTRIBUTE_WEIGHT)).floatValue();
// System.out.println(weight);
break;
} else {
weight = (float) 0.0;
}
}
pw.print(weight + " ");
}
pw.println();
}
}
public Data[] execute() {
File inData, outData;
Data[] dm = null;
ValidateNETFile validator;
// System.out.println("Executing PajeknetToPajekMat");
Object inFile = data[0].getData();
if (inFile instanceof File) {
inData = (File) inFile;
validator = new ValidateNETFile();
// System.out.println("Before try");
try {
// System.out.println("Trying");
validator.validateNETFormat(inData);
if (validator.getValidationResult()) {
outData = convertNetToMat(validator);
if (outData != null) {
dm = new Data[] {new BasicData(outData, MATFileProperty.MAT_MIME_TYPE)};
return dm;
} else {
logger.log(
LogService.LOG_ERROR,
"Problem executing conversion from Pajek .net to .mat. Output file was not created");
return null;
}
} else {
logger.log(
LogService.LOG_ERROR,
"Problem executing conversion from Pajek .net to .mat "
+ validator.getErrorMessages());
return null;
}
} catch (FileNotFoundException fnf) {
logger.log(LogService.LOG_ERROR, "Could not find the specified Pajek .net file.", fnf);
return null;
} catch (IOException ioe) {
logger.log(LogService.LOG_ERROR, "IO Error while converting from Pajek .net to .mat.", ioe);
ioe.printStackTrace();
return null;
} catch (Exception ex) {
logger.log(
LogService.LOG_ERROR,
"Error while converting from Pajek .net to .mat." + validator.getErrorMessages(),
ex);
ex.printStackTrace();
return null;
}
} else
logger.log(
LogService.LOG_ERROR,
"Unable to convert the file. "
+ "Unable to convert from Pajek .net to .mat because input data is not a file");
return null;
}
private File convertNetToMat(ValidateNETFile vmf) {
try {
// System.out.println("Converting net to mat");
File net = getTempFile();
PrintWriter out = new PrintWriter(new BufferedWriter(new FileWriter(net)));
writeVertices(vmf, out);
// System.out.println(vmf.isDirectedGraph() + " " + vmf.isUndirectedGraph());
if (vmf.isDirectedGraph()) {
// System.out.println("Directed");
writeDirectedMatrix(vmf, out);
} else {
// System.out.println("Undirected");
writeUndirectedMatrix(vmf, out);
}
out.close();
return net;
} catch (FileNotFoundException e) {
logger.log(LogService.LOG_ERROR, "Unable to find the temporary .mat file.", e);
return null;
} catch (IOException ioe) {
logger.log(LogService.LOG_ERROR, "IO Errors while writing to the temporary .mat file.", ioe);
return null;
}
}
