public boolean doSelectCoord() throws HeadlessException {
SingleCoordSelectionPanel pan = new SingleCoordSelectionPanel();
// pan.setMaxX(this.expContext.getNrcols());
// pan.setMaxY(this.expContext.getNrrows());
if (maincont.getAbsDataAreaCoord() != null) {
pan.setCoord1(maincont.getAbsDataAreaCoord());
}
int ans =
JOptionPane.showConfirmDialog(
this, pan, "Enter a selection:", JOptionPane.OK_CANCEL_OPTION);
if (ans == JOptionPane.CANCEL_OPTION) {
return true;
}
// RELATIVE to current sub experiment
WellCoordinate c1 =
new WellCoordinate(
pan.getCoord1().getCol() - maincont.getExp().getColOffset(),
pan.getCoord1().getRow() - maincont.getExp().getRowOffset());
WellCoordinate c2 = c1.add(100, 100);
WellSelection sel = new WellSelection(c1, c2);
WellCoordinate abs = pan.getCoord1();
if (maincont.getAbsDataAreaCoord() != null && abs.equals(maincont.getAbsDataAreaCoord())) {
GuiUtils.showNonModalMsg("Same coordinates, I won't to anything", "Process");
return true;
}
maincont.setAbsDataAreaCoord(abs);
LookupUtils.publish(wellSelectionContent, sel);
return false;
}
/** Top component which displays something. */
@ConvertAsProperties(
dtd = "-//com.iontorrent.torrentscout.explorer//Process//EN",
autostore = false)
@TopComponent.Description(
preferredID = "ProcessTopComponent",
iconBase = "com/iontorrent/torrentscout/explorer/chart-curve-edit.png",
persistenceType = TopComponent.PERSISTENCE_NEVER)
@TopComponent.Registration(mode = "table_mode", openAtStartup = false)
@ActionID(category = "Window", id = "com.iontorrent.torrentscout.explorer.ProcessTopComponent")
@ActionReference(path = "Menu/Window" /*, position = 333 */)
@TopComponent.OpenActionRegistration(
displayName = "#CTL_ProcessAction",
preferredID = "ProcessTopComponent")
public final class ProcessTopComponent extends TopComponent
implements TaskListener, FlowListener, FiletypeListener {
ExperimentContext expContext;
private final transient Lookup.Result<ExperimentContext> expContextResults =
LookupUtils.getSubscriber(ExperimentContext.class, new SubscriberListener());
// private transient final Lookup.Result<WellSelection> selectionSelection =
// LookupUtils.getSubscriber(WellSelection.class, new WellSelectionListener());
private final transient InstanceContent wellSelectionContent =
LookupUtils.getPublisher(WellSelection.class);
ExplorerContext maincont;
WellSelection selection;
CurveView cview;
private RawType subtract_type;
private int subtract_flow;
RasterView raster;
private FlowNrPanel flowPanel;
private FiletypePanel typePanel;
private RasterData data;
boolean DOACTION;
private boolean automatic_nn;
public ProcessTopComponent() {
initComponents();
setName(NbBundle.getMessage(ProcessTopComponent.class, "CTL_ProcessTopComponent"));
setToolTipText(NbBundle.getMessage(ProcessTopComponent.class, "HINT_ProcessTopComponent"));
flowPanel = new FlowNrPanel(this);
if (maincont == null) {
flowPanel.setFlow(0);
} else {
flowPanel.setFlow(maincont.getFlow());
typePanel.setType(maincont.getFiletype());
}
typePanel = new FiletypePanel(this);
this.toolbar.add(this.flowPanel, null, 0);
toolbar.add(this.typePanel, null, 0);
}
@Override
public void flowChanged(ArrayList<Integer> flows) {
int f = flows.get(0);
if (maincont == null) {
return;
}
if (f == maincont.getFlow()) {
return;
}
p("flow changed");
maincont.setFlow(f);
// this.rasterViewCreate(true, null);
// recomputeChart();
}
@Override
public void fileTypeChanged(RawType filetype) {
if (maincont == null) {
return;
}
if (maincont != null) {
maincont.setFiletype(filetype);
}
p("filetypechanged");
// this.rasterViewCreate(true, null);
}
public boolean doSaveChartAction() {
String file = Export.getFile("Save chart data into file", "*.csv", true);
if (file == null) {
return true;
}
boolean ok = cview.export(file);
// mask.write(file);
if (!ok) {
GuiUtils.showNonModalMsg("Problem writing chart to file...");
} else {
GuiUtils.showNonModalMsg("Wrote chart to file " + file);
}
return false;
}
public boolean doSelectCoord() throws HeadlessException {
SingleCoordSelectionPanel pan = new SingleCoordSelectionPanel();
// pan.setMaxX(this.expContext.getNrcols());
// pan.setMaxY(this.expContext.getNrrows());
if (maincont.getAbsDataAreaCoord() != null) {
pan.setCoord1(maincont.getAbsDataAreaCoord());
}
int ans =
JOptionPane.showConfirmDialog(
this, pan, "Enter a selection:", JOptionPane.OK_CANCEL_OPTION);
if (ans == JOptionPane.CANCEL_OPTION) {
return true;
}
// RELATIVE to current sub experiment
WellCoordinate c1 =
new WellCoordinate(
pan.getCoord1().getCol() - maincont.getExp().getColOffset(),
pan.getCoord1().getRow() - maincont.getExp().getRowOffset());
WellCoordinate c2 = c1.add(100, 100);
WellSelection sel = new WellSelection(c1, c2);
WellCoordinate abs = pan.getCoord1();
if (maincont.getAbsDataAreaCoord() != null && abs.equals(maincont.getAbsDataAreaCoord())) {
GuiUtils.showNonModalMsg("Same coordinates, I won't to anything", "Process");
return true;
}
maincont.setAbsDataAreaCoord(abs);
LookupUtils.publish(wellSelectionContent, sel);
return false;
}
public void getUserPreferences() {
if (maincont == null) {
return;
}
Preferences p =
NbPreferences.forModule(
com.iontorrent.torrentscout.explorer.options.TorrentExplorerPanel.class);
int span = p.getInt("span", 8);
int size = p.getInt("masksize", 100);
automatic_nn = p.getBoolean("automatic_nn", true);
maincont.setRasterSize(size);
maincont.setSpan(span);
maincont.setMedianFunction("median");
}
protected boolean getExpContext() {
// Exception e = new Exception("showing stack trace");
// p(ErrorHandler.getString(e));
if (expContext == null) {
expContext = GlobalContext.getContext().getExperimentContext();
}
if (expContext == null) {
GuiUtils.showNonModalMsg("Got no experiment context from global contexet");
return false;
}
maincont = ExplorerContext.getCurContext(expContext);
info.setText(expContext.getRawDir());
this.btnreload.setToolTipText(
"Reload data from dir " + expContext.getRawDir() + " at " + maincont.getAbsDataAreaCoord());
return true;
}
// private class WellSelectionListener implements LookupListener {
//
// @Override
// public void resultChanged(LookupEvent ev) {
// //ask
// int ans = JOptionPane.showConfirmDialog(ProcessTopComponent.this, "Would you like to
// reload the data with the updated coordinate?");
// if (ans == JOptionPane.OK_OPTION) getLatestSelection();
// }
// }
// private void getLatestSelection() {
// final Collection<? extends WellSelection> selections =
// selectionSelection.allInstances();
// if (!selections.isEmpty()) {
// // p("Getting last selection");
// selection = null;
// Iterator<WellSelection> it = (Iterator<WellSelection>) selections.iterator();
// while (it.hasNext()) {
// selection = it.next();
// }
// p("Got a selection: " + selection);
// maincont.setDataAreaCoord(selection.getCoord1());
// maincont.getExp().getWellContext().setSelection(selection);
//
// // p("SubscriberListener Got WellSelection:" + cur_context);
// GuiUtils.showNonModalMsg("Process: Got a well selection: " + selection);
// // rasterViewUpdate(true);
// }
//
// }
private void addGui() {
if (expContext == null) {
expContext = GlobalContext.getContext().getExperimentContext();
}
if (expContext == null) {
// GuiUtils.showNonModalMsg("Got no experiment context");
return;
}
maincont = ExplorerContext.getCurContext(expContext);
getUserPreferences();
rasterViewCreate(true, null);
maincont.addListener(
new ContextChangeAdapter() {
@Override
public void fileTypeChanged(RawType t) {
p("RawType chnaged: " + t);
typePanel.setType(t);
// rasterViewCreate(true, null);
}
@Override
public void flowChanged(int flow) {
p("flow changed: " + flow);
rasterViewCreate(true, "Raw data");
}
@Override
public void dataChanged(
RasterData data,
int startrow,
int startcol,
int startflow,
int endrow,
int endcol,
int endflow) {
p(
"RasterData chnged: "
+ startrow
+ "/"
+ startcol
+ "/"
+ startflow
+ ", NOT reloading automatically");
// rasterViewUpdate();
}
@Override
public void coordChanged(WellCoordinate coord) {
// p("coord chnged: " + coord);
chartViewUpdate();
}
@Override
public void dataAreaCoordChanged(WellCoordinate coord) {
p("data area coord changed: " + coord);
btnreload.setToolTipText("Reload data from at " + maincont.getAbsDataAreaCoord());
// rebuildMaskComboBoxes();
rasterViewCreate(true, "Raw data");
}
@Override
public void widgetChanged(Widget w) {
p("widget chnged: " + w);
chartViewUpdate();
}
});
if (expContext.getWellContext().getCoordinate() == null) {
expContext.getWellContext().setCoordinate(new WellCoordinate(100, 100));
}
}
private RasterData computeNN(ProgressListener prog) {
return computeNN(prog, maincont.getData());
}
private RasterData computeNN(ProgressListener prog, RasterData rawdata) {
// p("computeNN. Maincont is: " + maincont);
if (rawdata == null) {
GuiUtils.showNonModalDialog(
"<html>I see no data yet - did you already pick a region?<br>"
+ "(Even if you see something somewhere, if you didn't actually select a region, it might just show some sample data)</html>",
"No data - region selected?");
return null;
}
RasterData nndata = null;
try {
if (maincont == null) {
maincont = ExplorerContext.getCurContext(expContext);
}
int span = Math.max(1, this.maincont.getSpan());
NearestNeighbor nn = new NearestNeighbor(span, maincont.getMedianFunction());
BitMask ignore = maincont.getIgnoreMask();
BitMask take = maincont.getBgMask();
if (take != null && take == ignore) {
JOptionPane.showMessageDialog(
this,
"You select the same mask for ignore and bg :-). \nYou should select another mask for the bg (or you get a null result. I will just return the old data.");
return rawdata;
}
if (take != null && take.computePercentage() < 1) {
int ans =
JOptionPane.showConfirmDialog(
this,
"<html>The bg mask only has "
+ take.computePercentage()
+ "% wells, do you want to still use it?"
+ "<br><b>Did you already select a region?</b>"
+ "<br>You might want to use the MaskEditor (and <b>refresh</b> the masks possibly) to check them</html>",
"Few wells",
JOptionPane.OK_CANCEL_OPTION);
if (ans == JOptionPane.CANCEL_OPTION) {
return rawdata;
}
}
maincont.setBgMask(take);
maincont.setIgnoreMask(ignore);
if (prog != null)
prog.setMessage(
"Masked neighbor subtraction: ignore mask " + ignore + " and empty mask " + take);
// RasterData nndata = nn.compute(rawdata, mask, prog, span);
// p("calling computebetter");
// if (boxslow.isSelected()) nndata =nn.computeSlow(rawdata, ignore, take, prog, span);
nndata = nn.computeBetter(rawdata, ignore, take, prog, span);
} catch (Exception e) {
p("Error with nn: " + ErrorHandler.getString(e));
JOptionPane.showMessageDialog(
this,
"I was not able to do the masked neighbor subtraction:\n" + ErrorHandler.getString(e));
return null;
}
if (nndata == null) {
JOptionPane.showMessageDialog(
this,
"I was not able to do the masked neighbor subtraction - I got no error but also no result :-) ");
}
return nndata;
}
private void doHintAction() {
String msg = "<html>You can do the following things here:<ul>";
msg += "<li><b>Pick the masks for NN subtraction in the Mask Editor Component</b></li>";
msg +=
"<li>You can change the automatic NN subtraction in the <b>Options/Explorer options tab</b></li>";
msg += "<li>drag the cursors around in the left view with the <b>left</b> mouse button </li>";
msg +=
"<li>overlay masks by selecting them in the drop down box and checking one of the 3 check boxes </li>";
msg += "<li>move the yellow cursor (main cursor) around:";
msg += "<ul><li>First, click on it (or the image)</li>";
msg += "<li>the <b>cursor keys</b> will move it around</li>";
msg +=
"<li>the <b>space or tab key</b> will move it to the next flagged coordinate (if a mask is overlayed)</li>";
msg += "<li>the <b>delete key</b> will delete a flag (if a mask is overlayed)</li>";
msg += "<li>the <b>insert key</b> will add a flag (if a mask is overlayed)</li>";
msg += "</ul></li>";
msg += "<li>change the number of cursors (text field) </li>";
msg +=
"<li>do a <b>masked neighbor subtraction</b> by picking a bg and ingore mask and then clicking the wheels icon"
+ "<br>(it will compute the average signal using bg wells, excluding ignore wells, with the given radius around a well (span))"
+ "<br>(the span can ge changed in Tools, Options, Explorer Options)</li>";
msg += "<li>move the image around with the right mouse button</li>";
msg += "<li>zoom in or out of the image with a mouse wheel</li>";
msg +=
"<li>to change the size (100x100 is default), go to Tools, Options, Explorer Options</li>";
msg += "</ul></html>";
JOptionPane.showMessageDialog(this, msg);
}
@Override
public void taskDone(Task t) {
p("Task " + t + " is done");
setCursor(null);
// if (t.isSuccess()) {
this.data = ((ComputeNN) t).getData();
p("Got nndata " + data);
if (data == null) {
JOptionPane.showMessageDialog(this, "There was a problem in nn compute, I got no result");
} else {
maincont.setData(data);
rasterViewCreate(
false,
"After masked neighbor subtraction, span="
+ maincont.getSpan()
+ ", BG mask="
+ maincont.getBgMask());
}
}
private class ComputeNN extends Task {
boolean ok;
public ComputeNN(TaskListener tlistener) {
super(tlistener, ProgressHandleFactory.createHandle("Computing NN..."));
}
public RasterData getData() {
return data;
}
@Override
public Void doInBackground() {
data = computeNN(this);
return null;
}
public boolean isSuccess() {
return ok;
}
}
private class SubscriberListener implements LookupListener {
@Override
public void resultChanged(LookupEvent ev) {
getLatestExperimentContext();
}
}
private void getLatestExperimentContext() {
final Collection<? extends ExperimentContext> items = expContextResults.allInstances();
if (!items.isEmpty()) {
ExperimentContext data = null;
Iterator<ExperimentContext> it = (Iterator<ExperimentContext>) items.iterator();
while (it.hasNext()) {
data = it.next();
}
expContext = data;
update(expContext);
}
}
@Override
public Action[] getActions() {
return OpenWindowAction.getActions(this);
}
@Override
public void componentOpened() {
getLatestExperimentContext();
}
private void p(String msg) {
System.out.println("Process: " + msg);
}
private void update(ExperimentContext result) {
if (result == null) {
result = GlobalContext.getContext().getExperimentContext();
}
if (result == null) {
// GuiUtils.showNonModalMsg("Got no experiment context");
return;
}
if (result != null) {
this.expContext = result;
maincont = ExplorerContext.getCurContext(result);
getUserPreferences();
addGui();
}
}
public void rasterViewUpdate() {
p("rasterviewupdate called");
raster.update(false, maincont);
cview.repaint();
}
public void rasterViewCreate(boolean load, String title) {
p("=========rasterViewCreate called: load=" + load);
// if (load) {
// Exception e = new Exception("Tracing call");
// p(ErrorHandler.getString(e));
// }
if (!getExpContext()) {
return;
}
if (load) {
if (selection != null)
GuiUtils.showNonModalMsg(
"Loading "
+ selection
+ " for "
+ maincont.getFiletype()
+ ", flow "
+ maincont.getFlow(),
"Process");
}
String base = "?";
if (maincont.getFiletype() == RawType.ACQ) {
base = "" + maincont.getExp().getWellContext().getBase(maincont.getFlow());
}
this.flowPanel.setToolTipText(
"<html>Base for flow "
+ maincont.getFlow()
+ ":"
+ base
+ "<br>Flow order: "
+ maincont.getExp().getFlowOrder()
+ "</html>");
raster = new RasterView(maincont, load);
this.panImage.removeAll();
panImage.add(raster);
// repaint();
// p("adding raster view");
if (load) {
this.getUserPreferences();
}
raster.update(load, maincont);
// paintImmediately(0,0,1000,1000);
panImage.repaint();
raster.repaint();
if (load) {
title = "Raw data";
}
title += " flow " + maincont.getFlow() + "=" + base;
chartViewCreate(title);
invalidate();
revalidate();
// this.paintAll(getGraphics());
repaint();
if (load) {
if (this.automatic_nn) {
p("also doing nn - disable nn");
this.btnNN.setEnabled(false);
btnNN.setText("");
btnNN.setToolTipText(
"Automatically computing NN - check Explorer Options if you wish to change it!");
RasterData data = computeNN(null);
maincont.setData(data);
rasterViewCreate(
false,
"After masked neighbor subtraction, span="
+ maincont.getSpan()
+ ", BG mask="
+ maincont.getBgMask());
} else {
this.btnNN.setEnabled(true);
btnNN.setText("Compute NN");
btnNN.setToolTipText(
"Click to compute NN bg subtraction - check Explorer Options if you wish <b>automate</b> this!");
}
}
}
public void chartViewCreate(String title) {
cview = new CurveView(maincont, title);
this.panChart.removeAll();
this.panChart.add("Center", cview);
panChart.repaint();
cview.repaint();
}
public void chartViewUpdate() {
cview.repaint();
}
/**
* This method is called from within the constructor to initialize the form. WARNING: Do NOT
* modify this code. The content of this method is always regenerated by the Form Editor.
*/
// <editor-fold defaultstate="collapsed" desc="Generated Code">//GEN-BEGIN:initComponents
private void initComponents() {
toolbar = new javax.swing.JToolBar();
btnNN = new javax.swing.JButton();
btnreload = new javax.swing.JButton();
subtract = new javax.swing.JButton();
btnSelect = new javax.swing.JButton();
btnSave = new javax.swing.JButton();
hint = new javax.swing.JButton();
refresh = new javax.swing.JButton();
info = new javax.swing.JLabel();
jScrollPane1 = new javax.swing.JScrollPane();
panChart = new javax.swing.JPanel();
panImage = new javax.swing.JPanel();
toolbar.setRollover(true);
toolbar.setOpaque(false);
btnNN.setIcon(
new javax.swing.ImageIcon(
getClass()
.getResource("/com/iontorrent/torrentscout/explorer/system-run-3.png"))); // NOI18N
org.openide.awt.Mnemonics.setLocalizedText(
btnNN,
org.openide.util.NbBundle.getMessage(
ProcessTopComponent.class, "ProcessTopComponent.btnNN.text")); // NOI18N
btnNN.setToolTipText(
org.openide.util.NbBundle.getMessage(
ProcessTopComponent.class, "ProcessTopComponent.btnNN.toolTipText")); // NOI18N
btnNN.setFocusable(false);
btnNN.setHorizontalTextPosition(javax.swing.SwingConstants.LEFT);
btnNN.setMargin(new java.awt.Insets(1, 1, 1, 1));
btnNN.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
btnNNActionPerformed(evt);
}
});
toolbar.add(btnNN);
btnreload.setIcon(
new javax.swing.ImageIcon(
getClass()
.getResource(
"/com/iontorrent/torrentscout/explorer/database-refresh.png"))); // NOI18N
org.openide.awt.Mnemonics.setLocalizedText(
btnreload,
org.openide.util.NbBundle.getMessage(
ProcessTopComponent.class, "ProcessTopComponent.btnreload.text")); // NOI18N
btnreload.setToolTipText(
org.openide.util.NbBundle.getMessage(
ProcessTopComponent.class, "ProcessTopComponent.btnreload.toolTipText")); // NOI18N
btnreload.setFocusable(false);
btnreload.setHorizontalTextPosition(javax.swing.SwingConstants.LEFT);
btnreload.setMargin(new java.awt.Insets(1, 1, 1, 1));
btnreload.setVerticalTextPosition(javax.swing.SwingConstants.BOTTOM);
btnreload.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
btnreloadActionPerformed(evt);
}
});
toolbar.add(btnreload);
subtract.setIcon(
new javax.swing.ImageIcon(
getClass().getResource("/com/iontorrent/torrentscout/explorer/minus.png"))); // NOI18N
org.openide.awt.Mnemonics.setLocalizedText(
subtract,
org.openide.util.NbBundle.getMessage(
ProcessTopComponent.class, "ProcessTopComponent.subtract.text")); // NOI18N
subtract.setToolTipText(
org.openide.util.NbBundle.getMessage(
ProcessTopComponent.class, "ProcessTopComponent.subtract.toolTipText")); // NOI18N
subtract.setFocusable(false);
subtract.setHorizontalTextPosition(javax.swing.SwingConstants.CENTER);
subtract.setVerticalTextPosition(javax.swing.SwingConstants.BOTTOM);
subtract.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
subtractActionPerformed(evt);
}
});
toolbar.add(subtract);
btnSelect.setIcon(
new javax.swing.ImageIcon(getClass().getResource("/select-rectangular.png"))); // NOI18N
org.openide.awt.Mnemonics.setLocalizedText(
btnSelect,
org.openide.util.NbBundle.getMessage(
ProcessTopComponent.class, "ProcessTopComponent.btnSelect.text")); // NOI18N
btnSelect.setToolTipText(
org.openide.util.NbBundle.getMessage(
ProcessTopComponent.class, "ProcessTopComponent.btnSelect.toolTipText")); // NOI18N
btnSelect.setFocusable(false);
btnSelect.setHorizontalTextPosition(javax.swing.SwingConstants.LEFT);
btnSelect.setMargin(new java.awt.Insets(1, 1, 1, 1));
btnSelect.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
btnSelectActionPerformed(evt);
}
});
toolbar.add(btnSelect);
btnSave.setIcon(
new javax.swing.ImageIcon(
getClass().getResource("/com/iontorrent/maskview/document-export.png"))); // NOI18N
org.openide.awt.Mnemonics.setLocalizedText(
btnSave,
org.openide.util.NbBundle.getMessage(
ProcessTopComponent.class, "ProcessTopComponent.btnSave.text")); // NOI18N
btnSave.setToolTipText(
org.openide.util.NbBundle.getMessage(
ProcessTopComponent.class, "ProcessTopComponent.btnSave.toolTipText")); // NOI18N
btnSave.setMargin(new java.awt.Insets(1, 1, 1, 1));
btnSave.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
btnSaveActionPerformed(evt);
}
});
toolbar.add(btnSave);
hint.setIcon(
new javax.swing.ImageIcon(
getClass()
.getResource("/com/iontorrent/torrentscout/explorer/help-hint.png"))); // NOI18N
org.openide.awt.Mnemonics.setLocalizedText(
hint,
org.openide.util.NbBundle.getMessage(
ProcessTopComponent.class, "ProcessTopComponent.hint.text")); // NOI18N
hint.setToolTipText(
org.openide.util.NbBundle.getMessage(
ProcessTopComponent.class, "ProcessTopComponent.hint.toolTipText")); // NOI18N
hint.setFocusable(false);
hint.setHorizontalTextPosition(javax.swing.SwingConstants.CENTER);
hint.setMargin(new java.awt.Insets(0, 0, 0, 0));
hint.setVerticalTextPosition(javax.swing.SwingConstants.BOTTOM);
hint.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
hintActionPerformed(evt);
}
});
toolbar.add(hint);
refresh.setIcon(
new javax.swing.ImageIcon(
getClass()
.getResource(
"/com/iontorrent/torrentscout/explorer/view-refresh-3.png"))); // NOI18N
org.openide.awt.Mnemonics.setLocalizedText(
refresh,
org.openide.util.NbBundle.getMessage(
ProcessTopComponent.class, "ProcessTopComponent.refresh.text")); // NOI18N
refresh.setToolTipText(
org.openide.util.NbBundle.getMessage(
ProcessTopComponent.class, "ProcessTopComponent.refresh.toolTipText")); // NOI18N
refresh.setFocusable(false);
refresh.setHorizontalTextPosition(javax.swing.SwingConstants.CENTER);
refresh.setVerticalTextPosition(javax.swing.SwingConstants.BOTTOM);
refresh.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
refreshActionPerformed(evt);
}
});
toolbar.add(refresh);
org.openide.awt.Mnemonics.setLocalizedText(
info,
org.openide.util.NbBundle.getMessage(
ProcessTopComponent.class, "ProcessTopComponent.info.text")); // NOI18N
toolbar.add(info);
panChart.setBorder(javax.swing.BorderFactory.createEtchedBorder());
panChart.setOpaque(false);
panChart.setLayout(new java.awt.BorderLayout());
panImage.setBorder(javax.swing.BorderFactory.createEtchedBorder());
panImage.setLayout(new java.awt.BorderLayout());
javax.swing.GroupLayout layout = new javax.swing.GroupLayout(this);
this.setLayout(layout);
layout.setHorizontalGroup(
layout
.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addComponent(toolbar, javax.swing.GroupLayout.DEFAULT_SIZE, 1090, Short.MAX_VALUE)
.addGroup(
layout
.createSequentialGroup()
.addComponent(
panImage,
javax.swing.GroupLayout.PREFERRED_SIZE,
546,
javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(
panChart, javax.swing.GroupLayout.DEFAULT_SIZE, 528, Short.MAX_VALUE)
.addContainerGap())
.addGroup(
layout
.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(
layout
.createSequentialGroup()
.addGap(0, 544, Short.MAX_VALUE)
.addComponent(
jScrollPane1,
javax.swing.GroupLayout.PREFERRED_SIZE,
javax.swing.GroupLayout.DEFAULT_SIZE,
javax.swing.GroupLayout.PREFERRED_SIZE)
.addGap(0, 544, Short.MAX_VALUE))));
layout.setVerticalGroup(
layout
.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(
layout
.createSequentialGroup()
.addComponent(
toolbar,
javax.swing.GroupLayout.PREFERRED_SIZE,
25,
javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addGroup(
layout
.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addComponent(
panChart,
javax.swing.GroupLayout.DEFAULT_SIZE,
382,
Short.MAX_VALUE)
.addComponent(
panImage,
javax.swing.GroupLayout.DEFAULT_SIZE,
382,
Short.MAX_VALUE)))
.addGroup(
layout
.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(
layout
.createSequentialGroup()
.addGap(0, 208, Short.MAX_VALUE)
.addComponent(
jScrollPane1,
javax.swing.GroupLayout.PREFERRED_SIZE,
javax.swing.GroupLayout.DEFAULT_SIZE,
javax.swing.GroupLayout.PREFERRED_SIZE)
.addGap(0, 203, Short.MAX_VALUE))));
} // </editor-fold>//GEN-END:initComponents
private void btnNNActionPerformed(
java.awt.event.ActionEvent evt) { // GEN-FIRST:event_btnNNActionPerformed
p(" about to compute nn. Maincont is: " + maincont + ", data is: " + maincont.getData());
ComputeNN task = new ComputeNN(this);
task.execute();
} // GEN-LAST:event_btnNNActionPerformed
private void btnreloadActionPerformed(
java.awt.event.ActionEvent evt) { // GEN-FIRST:event_btnreloadActionPerformed
rasterViewCreate(true, "Raw data");
} // GEN-LAST:event_btnreloadActionPerformed
private void btnSelectActionPerformed(
java.awt.event.ActionEvent evt) { // GEN-FIRST:event_btnSelectActionPerformed
doSelectCoord();
} // GEN-LAST:event_btnSelectActionPerformed
private void btnSaveActionPerformed(
java.awt.event.ActionEvent evt) { // GEN-FIRST:event_btnSaveActionPerformed
doSaveChartAction();
}
// GEN-LAST:event_btnSaveActionPerformed
private void refreshActionPerformed(
java.awt.event.ActionEvent evt) { // GEN-FIRST:event_refreshActionPerformed
this.raster.redrawImages();
} // GEN-LAST:event_refreshActionPerformed
private void subtractActionPerformed(
java.awt.event.ActionEvent evt) { // GEN-FIRST:event_subtractActionPerformed
RasterData data = maincont.getData();
if (data == null) {
JOptionPane.showMessageDialog(this, "I have no data yet to subtract anything from :-)");
return;
}
if (subtract_type == null) {
subtract_type = maincont.getFiletype();
}
FlowSelection pan =
new FlowSelection(
"Select the flow and file type you wish to subtract from the currently selected data");
pan.setFlow(subtract_flow);
pan.setFiletype(subtract_type);
int ans =
JOptionPane.showConfirmDialog(
this,
pan,
"Data Subtraction",
JOptionPane.OK_CANCEL_OPTION,
JOptionPane.QUESTION_MESSAGE);
if (ans != JOptionPane.OK_OPTION) {
return;
}
subtract_flow = pan.getFlow();
subtract_type = pan.getFiletype();
// otherwise load the data and then subtract
RasterData sub = null;
DataAccessManager manager = DataAccessManager.getManager(maincont.getExp().getWellContext());
try {
p("Loading subregion, RELATIVE coord " + maincont.getRelativeDataAreaCoord());
sub =
manager.getRasterDataForArea(
null,
maincont.getRasterSize(),
maincont.getRelativeDataAreaCoord(),
pan.getFlow(),
pan.getFiletype(),
null,
0,
-1);
// now subtract first frame
} catch (Exception ex) {
p("Error when loading: " + ErrorHandler.getString(ex));
}
if (sub == null) {
JOptionPane.showMessageDialog(
this,
"I could not load flow "
+ pan.getFlow()
+ ", "
+ pan.getFiletype()
+ ", @ "
+ maincont.getAbsDataAreaCoord());
return;
}
String what = "raw";
if (this.automatic_nn) {
GuiUtils.showNonModalMsg("Computing NN before subtraction");
sub = computeNN(null, sub);
what = "NN subtracted";
}
data.subtract(sub);
JOptionPane.showMessageDialog(
this,
"I subtracted the "
+ what
+ " data from "
+ pan.getFlow()
+ ", "
+ pan.getFiletype()
+ ", @ "
+ maincont.getAbsDataAreaCoord());
this.rasterViewUpdate();
} // GEN-LAST:event_subtractActionPerformed
private void hintActionPerformed(
java.awt.event.ActionEvent evt) { // GEN-FIRST:event_hintActionPerformed
doHintAction();
} // GEN-LAST:event_hintActionPerformed
// Variables declaration - do not modify//GEN-BEGIN:variables
private javax.swing.JButton btnNN;
private javax.swing.JButton btnSave;
private javax.swing.JButton btnSelect;
private javax.swing.JButton btnreload;
private javax.swing.JButton hint;
private javax.swing.JLabel info;
private javax.swing.JScrollPane jScrollPane1;
private javax.swing.JPanel panChart;
private javax.swing.JPanel panImage;
private javax.swing.JButton refresh;
private javax.swing.JButton subtract;
private javax.swing.JToolBar toolbar;
// End of variables declaration//GEN-END:variables
@Override
public void componentClosed() {
// TODO add custom code on component closing
}
void writeProperties(java.util.Properties p) {
// better to version settings since initial version as advocated at
// http://wiki.apidesign.org/wiki/PropertyFiles
p.setProperty("version", "1.0");
// TODO store your settings
}
void readProperties(java.util.Properties p) {
String version = p.getProperty("version");
// TODO read your settings according to their version
}
private void setStatus(String msg) {
Message message =
StatusDisplayer.getDefault()
.setStatusText(
"<html>Process: " + msg + "</html>", StatusDisplayer.IMPORTANCE_FIND_OR_REPLACE);
message.clear(30000);
}
private void setStatusWarning(String msg) {
Message message =
StatusDisplayer.getDefault()
.setStatusText(
"<html>Process: " + msg + "</html>", StatusDisplayer.IMPORTANCE_ERROR_HIGHLIGHT);
message.clear(120000);
}
private void setStatusError(String msg) {
Message message =
StatusDisplayer.getDefault()
.setStatusText(
"<html>Process: " + msg + "</html>", StatusDisplayer.IMPORTANCE_ERROR_HIGHLIGHT);
message.clear(240000);
}
}