public BpPagedResults<BpClass> findAllClassesInOntology(
String ontology, int page, int pageSize, String apiKey) throws HTTPException, IOException {
String url =
BP_API_BASE
+ BP_ONTOLOGIES
+ ontology
+ "/"
+ BP_CLASSES
+ "?include=prefLabel,hasChildren,created,synonym,definition"
+ "&page="
+ page
+ "&pagesize="
+ pageSize;
HttpResponse response =
HttpUtil.makeHttpRequest(
Request.Get(url)
.addHeader("Authorization", Util.getBioPortalAuthHeader(apiKey))
.connectTimeout(connectTimeout)
.socketTimeout(socketTimeout));
int statusCode = response.getStatusLine().getStatusCode();
// The classes were successfully retrieved
if (statusCode == 200) {
ObjectMapper mapper = new ObjectMapper();
JsonNode bpResult =
mapper.readTree(new String(EntityUtils.toByteArray(response.getEntity())));
return mapper.readValue(
mapper.treeAsTokens(bpResult), new TypeReference<BpPagedResults<BpClass>>() {});
} else {
throw new HTTPException(statusCode);
}
}
public BpPagedResults<BpClass> findValueSetsByValueSetCollection(
String vsCollection, int page, int pageSize, String apiKey) throws IOException {
String url =
BP_API_BASE
+ BP_SEARCH
+ "?also_search_provisional=true&valueset_roots_only=true&ontology_types=VALUE_SET_COLLECTION&ontologies="
+ vsCollection
+ "&page="
+ page
+ "&pagesize="
+ pageSize;
HttpResponse response =
HttpUtil.makeHttpRequest(
Request.Get(url)
.addHeader("Authorization", Util.getBioPortalAuthHeader(apiKey))
.connectTimeout(connectTimeout)
.socketTimeout(socketTimeout));
int statusCode = response.getStatusLine().getStatusCode();
// Success
if (statusCode == 200) {
ObjectMapper mapper = new ObjectMapper();
JsonNode bpResult =
mapper.readTree(new String(EntityUtils.toByteArray(response.getEntity())));
return mapper.readValue(
mapper.treeAsTokens(bpResult), new TypeReference<BpPagedResults<BpClass>>() {});
} else {
throw new HTTPException(statusCode);
}
}
/**
* Invokes the given method on the {@code handler} passing the given params (after converting them
* to beans\objects) to it.
*
* @param m the method to invoke
* @param params the params to pass to the method
* @return the return value (or null if no return)
* @throws IOException on error
* @throws IllegalAccessException on error
* @throws InvocationTargetException on error
*/
protected JsonNode invoke(Method m, List<JsonNode> params)
throws IOException, IllegalAccessException, InvocationTargetException {
// debug log
if (LOGGER.isLoggable(Level.FINE)) {
LOGGER.log(Level.FINE, "Invoking method: " + m.getName());
}
// convert the parameters
Object[] convertedParams = new Object[params.size()];
Type[] parameterTypes = m.getGenericParameterTypes();
for (int i = 0; i < parameterTypes.length; i++) {
JsonParser paramJsonParser = mapper.treeAsTokens(params.get(i));
JavaType paramJavaType = TypeFactory.defaultInstance().constructType(parameterTypes[i]);
convertedParams[i] = mapper.readValue(paramJsonParser, paramJavaType);
}
// invoke the method
Object result = m.invoke(handler, convertedParams);
Type genericReturnType = m.getGenericReturnType();
if (genericReturnType != null) {
if (Collection.class.isInstance(result) && genericReturnType instanceof ParameterizedType) {
try {
if (LOGGER.isLoggable(Level.FINE)) {
LOGGER.log(Level.FINE, "attempting custom collection serialization");
}
TypeFactory typeFactory = mapper.getTypeFactory();
Type actualTypeInCollection =
((ParameterizedType) genericReturnType).getActualTypeArguments()[0];
if (actualTypeInCollection
instanceof TypeVariable) { // collection actually has a generic return type
actualTypeInCollection = ((TypeVariable) actualTypeInCollection).getBounds()[0];
}
JavaType rootType =
typeFactory.constructCollectionType(
Collection.class, typeFactory.constructType(actualTypeInCollection));
return valueToTree(mapper.writerWithType(rootType), result);
} catch (Exception e) {
LOGGER.log(
Level.WARNING,
"could not do custom collection serialization falling back to default",
e);
}
}
return mapper.valueToTree(result);
} else {
return null;
}
// return (genericReturnType!=null) ? mapper.valueToTree(result) : null;
}
@Test
public void test_add_customer_shipping_to_customer()
throws JsonParseException, JsonMappingException, IOException {
Client client = JerseyClientBuilder.createClient();
HttpAuthenticationFeature feature =
HttpAuthenticationFeature.basic("*****@*****.**", "password");
client.register(feature);
// CREATE NEW USER
Customer customer = new Customer();
customer.setUsername("*****@*****.**");
customer.setPassword("password");
Customer customerPersisted =
client
.target(String.format(REST_PRODUCT_SERVICE_URL, RULE.getLocalPort()))
.path(new StringBuilder("/customer").append("/signup").toString())
.request(MediaType.APPLICATION_JSON)
.post(Entity.json(customer), Customer.class);
assertThat(customerPersisted.getId()).isNotNull();
// ADD CCHAT TO USER
CChat cchat = new CChat("Usman-Asifa");
CChat persistedCchat =
client
.target(String.format(REST_PRODUCT_SERVICE_URL, RULE.getLocalPort()))
.path(
new StringBuilder("/customer/")
.append(customerPersisted.getId())
.append("/cchat")
.toString())
.request(MediaType.APPLICATION_JSON)
.post(Entity.json(cchat), CChat.class);
assertThat(persistedCchat.getId()).isNotNull();
// assertThat(persistedCchat.getUniqueName()).isEqualTo("Usman-Asifa");
// ADD CCHAT1 TO USER
CChat cchat1 = new CChat("Usman-Gulgs");
CChat persistedCchat1 =
client
.target(String.format(REST_PRODUCT_SERVICE_URL, RULE.getLocalPort()))
.path(
new StringBuilder("/customer/")
.append(customerPersisted.getId())
.append("/cchat")
.toString())
.request(MediaType.APPLICATION_JSON)
.post(Entity.json(cchat1), CChat.class);
assertThat(persistedCchat1.getId()).isNotNull();
// assertThat(persistedCchat1.getUniqueName()).isEqualTo("Usman-Gulgs");
// ADD CUSTOMERSHIPPING TO USER
CustomerShipping customerShipping =
new CustomerShipping(
"Usman", "Chaudhri", "2460 Fulton", "San Francisco", "CA", "94118", "USA", "Y");
CustomerShipping persistedCustomerShipping =
client
.target(String.format(REST_PRODUCT_SERVICE_URL, RULE.getLocalPort()))
.path(
new StringBuilder("/customer/")
.append(customerPersisted.getId())
.append("/customershipping")
.toString())
.request(MediaType.APPLICATION_JSON)
.post(Entity.json(customerShipping), CustomerShipping.class);
assertThat(persistedCustomerShipping.getId()).isNotNull();
assertThat(persistedCustomerShipping.getFirstName()).isEqualTo("Usman");
assertThat(persistedCustomerShipping.getLastName()).isEqualTo("Chaudhri");
// ADD ORDER TO USER
Order orderRequest = new Order();
orderRequest.setProductId("101");
orderRequest.setProductCategoryId("10");
orderRequest.setProductImagePath("/image/listing");
orderRequest.setProductName("shirt");
orderRequest.setProductPrice("10.99");
orderRequest.setProductQuantity("5");
orderRequest.setProductShopId("40");
orderRequest.setProductSku("SKU_101");
orderRequest.setStatus("Processed");
Order persistedOrder =
client
.target(String.format(REST_PRODUCT_SERVICE_URL, RULE.getLocalPort()))
.path(new StringBuilder("/orders").toString())
.request(MediaType.APPLICATION_JSON)
.post(Entity.json(orderRequest), Order.class);
assertThat(persistedOrder.getId()).isNotNull();
// GET PERSISTED CUSTOMER
Customer getPersistedCustomer =
client
.target(String.format(REST_PRODUCT_SERVICE_URL, RULE.getLocalPort()))
.path(new StringBuilder("/customer").append("/login").toString())
.request(MediaType.APPLICATION_JSON)
.get(Customer.class);
assertThat(getPersistedCustomer.getId()).isNotNull();
assertThat(getPersistedCustomer.getCustomerShipping().get(0).getId()).isNotNull();
assertThat(getPersistedCustomer.getCustomerShipping().get(0).getFirstName()).isNotNull();
// lazy load cchat
JsonNode getPersistedCustomerCchat =
client
.target(String.format(REST_PRODUCT_SERVICE_URL, RULE.getLocalPort()))
.path(
new StringBuilder("/customer/")
.append(getPersistedCustomer.getId())
.append("/cchat")
.toString())
.request(MediaType.APPLICATION_JSON)
.get(JsonNode.class);
ObjectMapper mapper = new ObjectMapper();
List<CChat> getPersistedCChats =
mapper.readValue(
mapper.treeAsTokens(getPersistedCustomerCchat), new TypeReference<List<CChat>>() {});
assertThat(getPersistedCChats.get(0).getId()).isNotNull();
assertThat(getPersistedCChats.get(1).getId()).isNotNull();
}
public <T> T getListWith(DrillConfig config, TypeReference<T> t) throws IOException {
ObjectMapper mapper = config.getMapper();
return mapper.treeAsTokens(root).readValueAs(t);
// return mapper.treeToValue(root, mapper.getTypeFactory().constructCollectionType(List.class,
// c));
}
