/**
* Returns a list of descriptions corresponding to every item matching the search.
*
* @return a list of descriptions
* @throws SQLException thrown if an SQLException occurs
* @throws ClassNotFoundException thrown if a ClassNotFoundException occurs
* @throws IOException thrown if an IOException occurs
* @throws InterruptedException thrown if an InterruptedException occurs
*/
public ArrayList<String> getPossibilitiesDescriptions()
throws SQLException, ClassNotFoundException, IOException, InterruptedException {
Identification identification = peptideShakerGUI.getIdentification();
// Some necessary pre-caching
ArrayList<Type> typeList = types.get(jumpType);
ArrayList<String> keys = possibilities.get(jumpType),
proteinKeys = new ArrayList<String>(),
peptideKeys = new ArrayList<String>();
for (int i = 0; i < keys.size(); i++) {
String key = keys.get(i);
if (typeList.get(i) == Type.PROTEIN) {
proteinKeys.add(key);
} else if (typeList.get(i) == Type.PEPTIDE) {
peptideKeys.add(key);
}
}
if (!proteinKeys.isEmpty()) {
identification.loadProteinMatches(proteinKeys, null, false);
}
if (!peptideKeys.isEmpty()) {
identification.loadPeptideMatches(peptideKeys, null, false);
}
ArrayList<String> descriptions = new ArrayList<String>();
for (int i = 0; i < keys.size(); i++) {
String key = keys.get(i);
Type type = typeList.get(i);
String description = getItemDescription(key, type);
descriptions.add(description);
}
return descriptions;
}
