@Test
public void testCreateDataSetWithNoSample() {
IExternalDataDAO externalDataDAO = daoFactory.getExternalDataDAO();
String dataSetCode = daoFactory.getPermIdDAO().createPermId();
ExternalDataPE externalData = createExternalData(dataSetCode, null);
externalDataDAO.createDataSet(externalData);
ExternalDataPE dataSet = (ExternalDataPE) externalDataDAO.tryToFindDataSetByCode(dataSetCode);
assertDataEqual(externalData, dataSet);
}
@Test
public void testCreateDataSetFailWithBothSampleAndParent() {
final IExternalDataDAO externalDataDAO = daoFactory.getExternalDataDAO();
// try to create a dataset connected with a sample and a parent at the same time
final String dataSetCode = daoFactory.getPermIdDAO().createPermId();
final SamplePE sample = pickASample();
ExternalDataPE parentData = findExternalData(PARENT_CODE);
ExternalDataPE externalData = createExternalData(dataSetCode, sample);
externalData.addParent(parentData);
externalDataDAO.createDataSet(externalData);
assertCommitFailsWithBothSampleAndParentConnectionForDataSet(dataSetCode);
}
@Test
public void testUpdateDataSetAquiredFromSample() {
IExternalDataDAO externalDataDAO = daoFactory.getExternalDataDAO();
DataPE data = new DataPE();
String dataSetCode = daoFactory.getPermIdDAO().createPermId();
data.setCode(dataSetCode);
data.setDataSetType(getDataSetType(DataSetTypeCode.UNKNOWN));
data.setExperiment(pickAnExperiment());
data.setSampleAcquiredFrom(pickASample());
data.setPlaceholder(true);
data.setDataStore(pickADataStore());
data.setModificationDate(new Date());
externalDataDAO.createDataSet(data);
ExternalDataPE externalData = new ExternalDataPE();
externalData.setId(externalDataDAO.tryToFindDataSetByCode(dataSetCode).getId());
externalData.setCode(dataSetCode);
externalData.setDataSetType(getDataSetType(DataSetTypeCode.UNKNOWN));
externalData.setDataStore(pickADataStore());
externalData.setExperiment(pickAnExperiment());
externalData.setSampleAcquiredFrom(pickASample());
externalData.setFileFormatType(pickAFileFormatType());
externalData.setLocatorType(pickALocatorType());
externalData.setLocation("abcd");
externalData.setComplete(BooleanOrUnknown.U);
externalData.setStorageFormatVocabularyTerm(pickAStorageFormatVocabularyTerm());
externalData.setPlaceholder(true);
final Date modificationTimestamp = data.getModificationDate();
externalData.setModificationDate(modificationTimestamp);
externalDataDAO.updateDataSet(externalData);
ExternalDataPE dataSet = (ExternalDataPE) externalDataDAO.tryToFindDataSetByCode(dataSetCode);
assertEquals(externalData.getCode(), dataSet.getCode());
assertEquals(externalData.getDataSetType(), dataSet.getDataSetType());
assertEquals(externalData.getExperiment(), dataSet.getExperiment());
assertEquals(externalData.getFileFormatType(), dataSet.getFileFormatType());
assertEquals(externalData.getLocatorType(), dataSet.getLocatorType());
assertEquals(externalData.getLocation(), dataSet.getLocation());
assertEquals(externalData.getComplete(), dataSet.getComplete());
assertEquals(externalData.getStorageFormat(), dataSet.getStorageFormat());
assertEquals(externalData.isPlaceholder(), dataSet.isPlaceholder());
assertEquals(externalData.isMeasured(), dataSet.isMeasured());
assertFalse(externalData.getModificationDate().equals(modificationTimestamp));
}