public void printTopWords(int numWords, boolean useNewLines) {
class WordProb implements Comparable {
int wi;
double p;
public WordProb(int wi, double p) {
this.wi = wi;
this.p = p;
}
public final int compareTo(Object o2) {
if (p > ((WordProb) o2).p) return -1;
else if (p == ((WordProb) o2).p) return 0;
else return 1;
}
}
for (int ti = 0; ti < numTopics; ti++) {
// Unigrams
WordProb[] wp = new WordProb[numTypes];
for (int wi = 0; wi < numTypes; wi++)
wp[wi] = new WordProb(wi, (double) unitypeTopicCounts[wi][ti]);
Arrays.sort(wp);
int numToPrint = Math.min(wp.length, numWords);
if (useNewLines) {
System.out.println("\nTopic " + ti + " unigrams");
for (int i = 0; i < numToPrint; i++)
System.out.println(
uniAlphabet.lookupObject(wp[i].wi).toString() + " " + wp[i].p / tokensPerTopic[ti]);
} else {
System.out.print("Topic " + ti + ": ");
for (int i = 0; i < numToPrint; i++)
System.out.print(uniAlphabet.lookupObject(wp[i].wi).toString() + " ");
}
// Bigrams
/*
wp = new WordProb[numBitypes];
int bisum = 0;
for (int wi = 0; wi < numBitypes; wi++) {
wp[wi] = new WordProb (wi, ((double)bitypeTopicCounts[wi][ti]));
bisum += bitypeTopicCounts[wi][ti];
}
Arrays.sort (wp);
numToPrint = Math.min(wp.length, numWords);
if (useNewLines) {
System.out.println ("\nTopic "+ti+" bigrams");
for (int i = 0; i < numToPrint; i++)
System.out.println (biAlphabet.lookupObject(wp[i].wi).toString() + " " + wp[i].p/bisum);
} else {
System.out.print (" ");
for (int i = 0; i < numToPrint; i++)
System.out.print (biAlphabet.lookupObject(wp[i].wi).toString() + " ");
System.out.println();
}
*/
// Ngrams
AugmentableFeatureVector afv = new AugmentableFeatureVector(new Alphabet(), 10000, false);
for (int di = 0; di < topics.length; di++) {
FeatureSequenceWithBigrams fs = (FeatureSequenceWithBigrams) ilist.get(di).getData();
for (int si = topics[di].length - 1; si >= 0; si--) {
if (topics[di][si] == ti && grams[di][si] == 1) {
String gramString = uniAlphabet.lookupObject(fs.getIndexAtPosition(si)).toString();
while (grams[di][si] == 1 && --si >= 0)
gramString =
uniAlphabet.lookupObject(fs.getIndexAtPosition(si)).toString() + "_" + gramString;
afv.add(gramString, 1.0);
}
}
}
// System.out.println ("pre-sorting");
int numNgrams = afv.numLocations();
// System.out.println ("post-sorting "+numNgrams);
wp = new WordProb[numNgrams];
int ngramSum = 0;
for (int loc = 0; loc < numNgrams; loc++) {
wp[loc] = new WordProb(afv.indexAtLocation(loc), afv.valueAtLocation(loc));
ngramSum += wp[loc].p;
}
Arrays.sort(wp);
int numUnitypeTokens = 0, numBitypeTokens = 0, numUnitypeTypes = 0, numBitypeTypes = 0;
for (int fi = 0; fi < numTypes; fi++) {
numUnitypeTokens += unitypeTopicCounts[fi][ti];
if (unitypeTopicCounts[fi][ti] != 0) numUnitypeTypes++;
}
for (int fi = 0; fi < numBitypes; fi++) {
numBitypeTokens += bitypeTopicCounts[fi][ti];
if (bitypeTopicCounts[fi][ti] != 0) numBitypeTypes++;
}
if (useNewLines) {
System.out.println(
"\nTopic "
+ ti
+ " unigrams "
+ numUnitypeTokens
+ "/"
+ numUnitypeTypes
+ " bigrams "
+ numBitypeTokens
+ "/"
+ numBitypeTypes
+ " phrases "
+ Math.round(afv.oneNorm())
+ "/"
+ numNgrams);
for (int i = 0; i < Math.min(numNgrams, numWords); i++)
System.out.println(
afv.getAlphabet().lookupObject(wp[i].wi).toString() + " " + wp[i].p / ngramSum);
} else {
System.out.print(
" (unigrams "
+ numUnitypeTokens
+ "/"
+ numUnitypeTypes
+ " bigrams "
+ numBitypeTokens
+ "/"
+ numBitypeTypes
+ " phrases "
+ Math.round(afv.oneNorm())
+ "/"
+ numNgrams
+ ")\n ");
// System.out.print (" (unique-ngrams="+numNgrams+"
// ngram-count="+Math.round(afv.oneNorm())+")\n ");
for (int i = 0; i < Math.min(numNgrams, numWords); i++)
System.out.print(afv.getAlphabet().lookupObject(wp[i].wi).toString() + " ");
System.out.println();
}
}
}
// TODO the method should be private
public void processEnglishFile(Document doc, String dataFile, String suffix)
throws ResourceInitializationException, UIMAException, IOException,
AnalysisEngineProcessException, SimilarityException {
String plainTextOutputPath = dataFile + "plain.txt";
String goodVSbadOutputPath = dataFile + ".csv";
String pairwiseOutputPath = dataFile + getPairwiseSuffix();
String kelpFilePath = dataFile + ".klp";
/** Marker which adds relational information to a pair of trees */
MarkTreesOnRepresentation marker = new MarkTreesOnRepresentation(new MarkTwoAncestors());
/** Load stopwords for english */
marker.useStopwords(Stopwords.STOPWORD_EN);
/** Tree serializer for converting tree structures to string */
TreeSerializer ts = new TreeSerializer().enableRelationalTags().useRoundBrackets();
/// ** Instantiate CASes */ assigned in the for loop
// JCas questionCas = JCasFactory.createJCas();
// WriteFile out = new WriteFile(dataFile + ".csv");
// TODO ABC, Sep 10th 2015. Do we really need this? It seems like a bad patch
doc.select("QURAN").remove();
doc.select("HADEETH").remove();
boolean firstRow = true;
/** Consume data */
Elements questions = doc.getElementsByTag("Question");
int numberOfQuestions = questions.size();
int qNumber = 1;
for (Element question : questions) {
System.out.println("[INFO]: Processing " + qNumber++ + " out of " + numberOfQuestions);
CQAinstance cqainstance = qElementToObject(question);
getFeaturesFromThread(cqainstance);
// TODO MOVE FROM HERE TO getFeaturesFromThread.
// FOR THAT the printing operations have to be moved out and
// question and comment must have a method to extract header+body.
// Move them from SubjectBodyAggregator
// AQUI VOY
/** Setup question CAS */
// questionCas.reset();
JCas questionCas = cqaElementToCas(cqainstance.getQuestion());
fm.writeLn(
plainTextOutputPath,
"---------------------------- QID: "
+ cqainstance.getQuestion().getId()
+ " USER:"******"q-" + qid, qsubject + ". " + qbody));
/*Comment-level features to be combined*/
List<List<Double>> listFeatures = new ArrayList<List<Double>>();
List<Map<String, Double>> albertoSimoneFeatures;
if (GENERATE_ALBERTO_AND_SIMONE_FEATURES) { // TODO RENAME THIS PLEASE
albertoSimoneFeatures = FeatureExtractor.extractFeatures(cqainstance);
}
int commentIndex = 0;
List<JCas> allCommentsCas = new ArrayList<JCas>();
for (CQAcomment c : cqainstance.getComments()) {
/** Setup comment CAS */
JCas commentCas = cqaElementToCas(c);
/** Run the UIMA pipeline */
SimplePipeline.runPipeline(commentCas, this.analysisEngineList);
// this.analyzer.analyze(commentCas, new SimpleContent("c-" + cid, csubject + ". " +
// cbody));
AugmentableFeatureVector fv;
if (GENERATE_MASSIMO_FEATURES) {
fv =
(AugmentableFeatureVector)
pfEnglish.getPairFeatures(questionCas, commentCas, PARAMETER_LIST);
} else {
fv = new AugmentableFeatureVector(this.alphabet);
}
if (GENERATE_ALBERTO_AND_SIMONE_FEATURES) {
Map<String, Double> featureVector = albertoSimoneFeatures.get(commentIndex);
for (String featureName : FeatureExtractor.getAllFeatureNames()) {
Double value = featureVector.get(featureName);
double featureValue = 0;
if (value != null) {
featureValue = value;
}
fv.add(featureName, featureValue);
}
}
commentIndex++;
/**
* ************************************* * * * PLUG YOUR FEATURES HERE * * * *
* *************************************
*/
/**
* fv is actually an AugmentableFeatureVector from the Mallet library
*
* <p>Internally the features are named so you must specify an unique identifier.
*
* <p>An example:
*
* <p>((AugmentableFeatureVector) fv).add("your_super_feature_id", 42);
*
* <p>or:
*
* <p>AugmentableFeatureVector afv = (AugmentableFeatureVector) fv;
* afv.add("your_super_feature_id", 42);
*/
// ((AugmentableFeatureVector) fv).add("quseridEqCuserid", quseridEqCuserid);
/**
* ************************************* * * * THANKS! * * * *
* *************************************
*/
/** Produce outputs */
writeToPlainTextOutput(plainTextOutputPath, c, commentCas);
// String goodVSbadOutputPath = dataFile + ".csv";
// String pairwiseOutputPath
// FIXME Once we fix that issue with the features, we can know this info
// in advance and fix the output, probably out of the method
if (firstRow) {
// header for Good vs Bad
this.fm.write(goodVSbadOutputPath, "qid,cgold,cgold_yn");
for (int i = 0; i < fv.numLocations(); i++) {
int featureIndex = i + 1;
this.fm.write(goodVSbadOutputPath, ",f" + featureIndex);
}
this.fm.writeLn(goodVSbadOutputPath, "");
// header for pairwise
this.fm.write(pairwiseOutputPath, "qid,cgold");
int numFeatures = fv.numLocations();
if (COMBINATION_CONCAT) {
numFeatures *= 2;
}
if (INCLUDE_SIMILARITIES) {
numFeatures += PairFeatureFactoryEnglish.NUM_SIM_FEATURES;
}
for (int i = 0; i < numFeatures; i++) {
int featureIndex = i + 1;
this.fm.write(pairwiseOutputPath, ",f" + featureIndex);
}
this.fm.writeLn(pairwiseOutputPath, "");
firstRow = false;
}
List<Double> features = this.serializeFv(fv);
listFeatures.add(features);
this.fm.writeLn(
goodVSbadOutputPath,
c.getId()
+ ","
+ c.getGold()
+ ","
+ c.getGold_yn()
+ ","
+ Joiner.on(",").join(features));
/** Produce also the file needed to train structural models */
if (PRODUCE_SVMLIGHTTK_DATA) {
produceSVMLightTKExample(
questionCas,
commentCas,
suffix,
ts,
cqainstance.getQuestion().getId(),
c.getId(),
c.getGold(),
c.getGold_yn(),
features);
}
if (PRODUCE_KELP_DATA) {
produceKelpExample(
questionCas,
commentCas,
kelpFilePath,
ts,
cqainstance.getQuestion().getId(),
c.getId(),
c.getGold(),
c.getGold_yn(),
features);
}
allCommentsCas.add(commentCas);
}
// TODO MOVE UP TO HERE
this.fm.write(
pairwiseOutputPath, computePairwiseFeatures(cqainstance, listFeatures, allCommentsCas));
// out.writeLn(computePairwiseFeatures(q, listFeatures);
}
// Iterator<String> iterator = questionCategories.iterator();
// while(iterator.hasNext()){
// System.out.println("CATEGORY_" + iterator.next());
// }
this.fm.closeFiles();
}
/**
* Process the xml file and output a csv file with the results in the same directory
*
* @param dataFile the xml file to process
* @suffix suffix for identifying the data file
* @param suffix
* @throws ResourceInitializationException
* @throws UIMAException
* @throws IOException
* @throws AnalysisEngineProcessException
* @throws SimilarityException
*/
private void processEnglishFile(String dataFile)
throws ResourceInitializationException, UIMAException, IOException,
AnalysisEngineProcessException, SimilarityException {
/** Parameters for matching tree structures */
String parameterList =
Joiner.on(",")
.join(new String[] {RichNode.OUTPUT_PAR_LEMMA, RichNode.OUTPUT_PAR_TOKEN_LOWERCASE});
/** Marker which adds relational information to a pair of trees */
MarkTreesOnRepresentation marker = new MarkTreesOnRepresentation(new MarkTwoAncestors());
/** Load stopwords for english */
marker.useStopwords(Stopwords.STOPWORD_EN);
/** Tree serializer for converting tree structures to string */
// TreeSerializer ts = new TreeSerializer().enableRelationalTags().useRoundBrackets();
WriteFile out = new WriteFile(dataFile + SUFFIX);
Document doc = Jsoup.parse(new File(dataFile), "UTF-8");
doc.select("QURAN").remove();
doc.select("HADEETH").remove();
boolean firstRow = true;
/** Consume data */
Elements questions = doc.getElementsByTag("Question");
int numberOfQuestions = questions.size();
int questionNumber = 1;
// Map<String, Boolean> commentIsDialogue = new HashMap<>();
// HashSet<String> questionCategories = new HashSet<String>();
double[] matches = new double[11];
int[] totals = new int[11];
int bin;
for (Element question : questions) {
Question q = new Question();
System.out.println("[INFO]: Processing " + questionNumber++ + " out of " + numberOfQuestions);
/** Parse question node */
String qid = question.attr("QID");
String qcategory = question.attr("QCATEGORY");
String qdate = question.attr("QDATE");
String quserid = question.attr("QUSERID");
String qtype = question.attr("QTYPE");
String qgold_yn = question.attr("QGOLD_YN");
String qsubject = question.getElementsByTag("QSubject").get(0).text();
String qbody = question.getElementsByTag("QBody").get(0).text();
// questionCategories.add(qcategory);
q.setQid(qid);
q.setQcategory(qcategory);
q.setQdate(qdate);
q.setQuserId(quserid);
q.setQtype(qtype);
q.setQgoldYN(qgold_yn);
q.setQsubject(qsubject);
q.setQbody(qbody);
// this.analyzer.analyze(questionCas, new SimpleContent("q-" + qid, qsubject + ". " + qbody));
/** Parse comment nodes */
Elements comments = question.getElementsByTag("Comment");
if (LIMIT_COMMENTS_PER_Q && comments.size() >= LIMIT_COMMENTS) {
continue;
}
for (Element comment : comments) {
String cid = comment.attr("CID");
String cuserid = comment.attr("CUSERID");
String cgold = comment.attr("CGOLD");
String cgold_yn = comment.attr("CGOLD_YN");
String csubject = comment.getElementsByTag("CSubject").get(0).text();
String cbody = comment.getElementsByTag("CBody").get(0).text();
q.addComment(cid, cuserid, cgold, cgold_yn, csubject, cbody);
}
List<JCas> allCommentsCas = new ArrayList<JCas>();
List<String> ids = new ArrayList<String>();
List<String> labels = new ArrayList<String>();
for (Element comment : comments) {
allCommentsCas.add(computeCommentCas(comment));
ids.add(comment.attr("CID"));
labels.add(getgold(comment.attr("CGOLD")));
}
for (int i = 0; i < allCommentsCas.size() - 1; i++) {
for (int j = i + 1; j <= allCommentsCas.size() - 1; j++) {
AugmentableFeatureVector fv;
// COMPUTE THE SIMILARITY HERE
// TODO where to assign this
// Whether the CAS are exactly identical
// how to store/display the output
fv =
(AugmentableFeatureVector)
pfEnglish.getPairFeatures(
allCommentsCas.get(i), allCommentsCas.get(j), parameterList);
// System.out.println(
// ids.get(i) + ","+
// labels.get(i) + ","+
// ids.get(j)+","+
// labels.get(j) + ","+
// Joiner.on(",").join(this.serializeFv(fv))
// );
bin = (int) Math.round(fv.getValues()[0] * 10);
if (labels.get(i).equals(labels.get(j))) matches[bin]++;
totals[bin]++;
/** Produce output line */
if (firstRow) {
out.write("qid,cgold");
for (int c = 0; c < fv.numLocations(); c++) {
int featureIndex = c + 1;
out.write(",f" + featureIndex);
}
out.write("\n");
firstRow = false;
}
// System.out.println(bin);
out.writeLn(
ids.get(i)
+ "-"
+ ids.get(j)
+ ","
+ labels.get(i)
+ "-"
+ labels.get(j)
+ ","
+ Joiner.on(",").join(this.serializeFv(fv)));
}
}
}
for (int i = 0; i < 11; i++)
System.out.println("BIN: " + i + " pctge: " + matches[i] / totals[i]);
this.fm.closeFiles();
out.close();
}