public void testCase_05_PaeruPA14muccA() {
String genome = "paeru.PA14";
String gff3File = "tests/paeru.PA14.muccA.gff";
String resultFile = "tests/paeru.PA14.muccA.txt";
SnpEffectPredictor sep = buildAndCompare(genome, gff3File, resultFile, true, false);
// Make sure no splice site is added
Gene gene = sep.getGenome().getGenes().iterator().next();
Transcript tr = gene.iterator().next();
List<SpliceSite> spliceSites = tr.createSpliceSites(SpliceSite.CORE_SPLICE_SITE_SIZE, 0, 0, 0);
Assert.assertEquals(0, spliceSites.size());
}
