@Override
protected WebMarkupContainer initialiseSearchResults() {
searchResultsPanel =
new SearchResultListPanel(
"searchResults", arkContextMarkup, containerForm, arkCrudContainerVO);
searchResultsPanel.setOutputMarkupId(true);
affectionProvider =
new ArkDataProvider<AffectionVO, IArkDiseaseService>(iArkDiseaseService) {
private static final long serialVersionUID = 1L;
public int size() {
int count = service.getAffectionCount(containerForm.getModelObject());
return count;
}
public Iterator<? extends AffectionVO> iterator(int first, int count) {
List<AffectionVO> affectionVOs =
service.searchPageableAffections(containerForm.getModelObject(), first, count);
return affectionVOs.iterator();
}
};
affectionProvider.setModel(this.cpModel);
dataView = searchResultsPanel.buildDataView(affectionProvider);
dataView.setItemsPerPage(iArkCommonService.getRowsPerPage());
AjaxPagingNavigator pageNavigator =
new AjaxPagingNavigator("navigator", dataView) {
private static final long serialVersionUID = 1L;
@Override
protected void onAjaxEvent(AjaxRequestTarget target) {
target.add(searchResultsPanel);
}
};
resultsWmc.add(pageNavigator);
resultsWmc.add(dataView);
searchResultsPanel.add(resultsWmc);
arkCrudContainerVO.getSearchResultPanelContainer().add(searchResultsPanel);
return arkCrudContainerVO.getSearchResultPanelContainer();
}
private void initCustomFieldDataListPanel() {
cfdProvider.setCriteriaModel(
new PropertyModel<CustomFieldDisplay>(cpModel, "customFieldGroup"));
List<CustomField> selectedList =
iPhenotypicService.getCustomFieldsLinkedToCustomFieldGroup(
getModelObject().getCustomFieldGroup());
Boolean disableEditButton = false;
if (getModelObject().getCustomFieldGroup().getPublished()) {
for (CustomField customField : selectedList) {
if (customField.getCustomFieldHasData()) {
disableEditButton = true;
break;
}
}
}
CustomFieldDisplayListPanel cfdListPanel =
new CustomFieldDisplayListPanel(
"cfdListPanel", feedBackPanel, arkCrudContainerVO, disableEditButton);
cfdListPanel.setOutputMarkupId(true);
cfdListPanel.initialisePanel();
dataView = cfdListPanel.buildDataView(cfdProvider);
dataView.setItemsPerPage(iArkCommonService.getRowsPerPage());
AjaxPagingNavigator pageNavigator =
new AjaxPagingNavigator("cfDisplayNavigator", dataView) {
private static final long serialVersionUID = 1L;
@Override
protected void onAjaxEvent(AjaxRequestTarget target) {
target.add(arkCrudContainerVO.getWmcForCustomFieldDisplayListPanel());
}
};
cfdListPanel.addOrReplace(pageNavigator);
cfdListPanel.addOrReplace(dataView);
arkCrudContainerVO.getWmcForCustomFieldDisplayListPanel().addOrReplace(cfdListPanel);
}
@Override
public void onStepInNext(AbstractWizardForm<?> form, AjaxRequestTarget target) {
try {
InputStream inputStream = containerForm.getModelObject().getFileUpload().getInputStream();
FileUpload fileUpload = containerForm.getModelObject().getFileUpload();
String uploadType = containerForm.getModelObject().getUploadType();
log.info("so what is the upload type =" + uploadType);
String filename = containerForm.getModelObject().getFileUpload().getClientFileName();
String fileFormat = filename.substring(filename.lastIndexOf('.') + 1).toUpperCase();
char delimChar =
containerForm.getModelObject().getUpload().getDelimiterType().getDelimiterCharacter();
// Only allow csv, txt or xls
if (!(fileFormat.equalsIgnoreCase("CSV")
|| fileFormat.equalsIgnoreCase("TXT")
|| fileFormat.equalsIgnoreCase("XLS"))) {
throw new FileFormatException();
}
BiospecimenUploadValidator biospecimenUploadValidator =
new BiospecimenUploadValidator(
containerForm.getModelObject().getUpload().getStudy(),
iArkCommonService,
iLimsService,
iInventoryService);
if (uploadType.equalsIgnoreCase(Constants.UPLOAD_TYPE_FOR_LOCATION_UPLOADER)) {
validationMessages =
biospecimenUploadValidator.validateLocationFileFormat(containerForm.getModelObject());
} else { // TODO : i dont see biocollection uploader, so let's kill it in the database for now
validationMessages =
biospecimenUploadValidator.validateSubjectFileFormat(containerForm.getModelObject());
}
containerForm.getModelObject().setValidationMessages(validationMessages);
validationMessage = containerForm.getModelObject().getValidationMessagesAsString();
addOrReplace(new MultiLineLabel("multiLineLabel", validationMessage));
ArkExcelWorkSheetAsGrid arkExcelWorkSheetAsGrid =
new ArkExcelWorkSheetAsGrid(
"gridView",
inputStream,
fileFormat,
delimChar,
fileUpload,
iArkCommonService.getRowsPerPage());
arkExcelWorkSheetAsGrid.setOutputMarkupId(true);
WebMarkupContainer wizardDataGridKeyContainer =
new WebMarkupContainer("wizardDataGridKeyContainer");
wizardDataGridKeyContainer.setVisible(false);
wizardDataGridKeyContainer.setOutputMarkupId(true);
form.setArkExcelWorkSheetAsGrid(arkExcelWorkSheetAsGrid);
form.getWizardPanelFormContainer().addOrReplace(arkExcelWorkSheetAsGrid);
form.setArkExcelWorkSheetAsGrid(arkExcelWorkSheetAsGrid);
form.getWizardPanelFormContainer().addOrReplace(wizardDataGridKeyContainer);
target.add(form.getWizardPanelFormContainer());
containerForm.getModelObject().setValidationMessages(validationMessages);
validationMessage = containerForm.getModelObject().getValidationMessagesAsString();
addOrReplace(new MultiLineLabel("multiLineLabel", validationMessage));
if (validationMessage != null && validationMessage.length() > 0) {
this.containerForm
.getModelObject()
.getUpload()
.setUploadStatus(
iArkCommonService.getUploadStatusFor(
au.org.theark.lims.web.Constants.UPLOAD_STATUS_OF_ERROR_IN_FILE_VALIDATION));
this.containerForm
.getModelObject()
.getUpload()
.setFilename(
filename); // have to reset this because the container has the file name...luckily
// it never changes
iArkCommonService.updateUpload(this.containerForm.getModelObject().getUpload());
form.getNextButton().setEnabled(false);
target.add(form.getWizardButtonContainer());
downloadValMsgButton =
new ArkDownloadAjaxButton(
"downloadValMsg", "ValidationMessage", validationMessage, "txt") {
private static final long serialVersionUID = 1L;
@Override
protected void onError(AjaxRequestTarget target, Form<?> form) {
this.error("Unexpected Error: Download request could not be processed");
}
};
addOrReplace(downloadValMsgButton);
target.add(downloadValMsgButton);
}
} catch (IOException e) {
validationMessage =
"Error attempting to display the file. Please check the file and try again.";
addOrReplace(new MultiLineLabel("multiLineLabel", validationMessage));
form.getNextButton().setEnabled(false);
target.add(form.getWizardButtonContainer());
} catch (FileFormatException ffe) {
validationMessage =
"Error uploading file. You can only upload files of type: CSV (comma separated values), TXT (text), or XLS (Microsoft Excel file)";
addOrReplace(new MultiLineLabel("multiLineLabel", validationMessage));
form.getNextButton().setEnabled(false);
target.add(form.getWizardButtonContainer());
}
}
