private void renderJmolProperties(RenderingInfo ri) {
try {
if (null != ri) {
String propertiesScript = viewer.getJmolPropertiesScript(ri);
if ((null != propertiesScript) && (0 != propertiesScript.length())) {
String filteredSelectionScript = viewer.getJmolFilteredSelectionScript(ri);
if ((null != filteredSelectionScript) && (0 != filteredSelectionScript.length())) {
String script = filteredSelectionScript + propertiesScript;
viewer.script(script);
}
}
}
} catch (StarBiochemException e) {
JOptionPane.showMessageDialog(
this,
e.getMessage()
+ "\n"
+ Messages.getString("MoleculeJmolContainer.15")); // $NON-NLS-1$ //$NON-NLS-2$
try {
if (null != viewer) {
viewer.script("restore STATE \"scriptState\";"); // $NON-NLS-1$
}
} catch (StarBiochemException e1) {
this.closeException = e;
this.raise_CloseMoleculeEvent();
}
}
}
private void init() {
loadPreferences("water"); // $NON-NLS-1$
overridePreferences(molecule);
setBorder(
new TitledBorder(
Messages.getString("WaterBondsRenderingPropertiesPanel.1"))); // $NON-NLS-1$
GridBagLayout gridbag = new GridBagLayout();
GridBagConstraints constraints = new GridBagConstraints();
setLayout(gridbag);
constraints.fill = GridBagConstraints.BOTH;
constraints.weighty = 1.0;
constraints.gridheight = 1;
constraints.insets = new Insets(0, 0, 12, 0);
constraints.gridy = 0;
bondtranslucency =
new WaterBondTranslucencyPropertyControls(
bondTranslucency_string, minscale, maxscale, this.selectedBondTranslucency);
addPropertyControls(bondtranslucency, constraints);
constraints.gridy = 1;
constraints.insets = new Insets(0, 0, 0, 0);
hBondProperties = new WaterHBondRenderingProperties(molecule);
add(hBondProperties, constraints);
invalidate();
validateTree();
}
private void init() {
loadPreferences("water"); // $NON-NLS-1$
setBorder(
new TitledBorder(
Messages.getString("WaterAtomsRenderingPropertiesPanel.1"))); // $NON-NLS-1$
overridePreferences(molecule);
GridBagLayout gridbag = new GridBagLayout();
GridBagConstraints constraints = new GridBagConstraints();
setLayout(gridbag);
constraints.fill = GridBagConstraints.BOTH;
constraints.weighty = 1.0;
constraints.gridheight = 1;
constraints.gridy = 0;
size = new WaterSizePropertyControls(size_string, minsize, maxsize, selectedSize);
addPropertyControls(size, constraints);
constraints.gridy = 1;
translucency =
new WaterTranslucencyPropertyControls(
translucency_string, minscale, maxscale, this.selectedTranslucency);
addPropertyControls(translucency, constraints);
invalidate();
validateTree();
}
private void renderAdjust(AdjustInfo ai) {
try {
if (null != ai) {
String script = getAdjustScript(ai);
if ((null != script) && !EMPTY_STRING.equals(script)) {
viewer.script(script);
}
}
} catch (StarBiochemException e) {
JOptionPane.showMessageDialog(
this,
e.getMessage()
+ "\n"
+ Messages.getString("MoleculeJmolContainer.3")); // $NON-NLS-1$ //$NON-NLS-2$
try {
if (null != viewer) {
viewer.script("restore STATE \"scriptState\";"); // $NON-NLS-1$
}
} catch (StarBiochemException e1) {
this.closeException = e;
this.raise_CloseMoleculeEvent();
}
}
}
@SignalComponent(
extend = AbstractAtomRenderingProperties.class,
raises = {})
public class WaterBondsRenderingPropertiesPanel
extends WaterBondsRenderingPropertiesPanel_generated {
private static final long serialVersionUID = 1L;
private static final String WATER = "Selected water"; // $NON-NLS-1$
private Molecule molecule = null;
public WaterBondsRenderingPropertiesPanel(Molecule molecule) {
this.molecule = molecule;
}
private boolean isInitialized = false;
public void addNotify() {
super.addNotify();
if (!isInitialized) {
init();
isInitialized = true;
}
}
public void removeNotify() {
end();
isInitialized = false;
super.removeNotify();
}
private void init() {
loadPreferences("water"); // $NON-NLS-1$
overridePreferences(molecule);
setBorder(
new TitledBorder(
Messages.getString("WaterBondsRenderingPropertiesPanel.1"))); // $NON-NLS-1$
GridBagLayout gridbag = new GridBagLayout();
GridBagConstraints constraints = new GridBagConstraints();
setLayout(gridbag);
constraints.fill = GridBagConstraints.BOTH;
constraints.weighty = 1.0;
constraints.gridheight = 1;
constraints.insets = new Insets(0, 0, 12, 0);
constraints.gridy = 0;
bondtranslucency =
new WaterBondTranslucencyPropertyControls(
bondTranslucency_string, minscale, maxscale, this.selectedBondTranslucency);
addPropertyControls(bondtranslucency, constraints);
constraints.gridy = 1;
constraints.insets = new Insets(0, 0, 0, 0);
hBondProperties = new WaterHBondRenderingProperties(molecule);
add(hBondProperties, constraints);
invalidate();
validateTree();
}
private void end() {
removeAll();
bondtranslucency = null;
hBondProperties = null;
}
public String getTitle() {
return WATER;
}
private String propertyName = null;
public String getPropertyName() {
return this.propertyName;
}
public void setPropertyName(String propertyName) {
this.propertyName = propertyName;
}
protected int propertyValue;
public int getPropertyValue() {
return this.propertyValue;
}
public void setPropertyValue(int propertyValue) {
this.propertyValue = propertyValue;
}
private WaterBondTranslucencyPropertyControls bondtranslucency = null;
private WaterHBondRenderingProperties hBondProperties = null;
String water_bond_render_string =
Messages.getString("WaterBondsRenderingPropertiesPanel.2"); // $NON-NLS-1$
private void overridePreferences(Molecule molecule) {
if (null != molecule) {
PDBRemark[] remarkArray = molecule.getRemarkArray();
if (null != remarkArray) {
for (PDBRemark remark : remarkArray) {
if (remark.isWaterOn()) {
this.defaultBondTranslucency = 0;
this.selectedBondTranslucency = 0;
break;
}
}
}
}
}
private boolean inInitTree = false;
public void initTree() {
if (!inInitTree) {
inInitTree = true;
initLocalVariables();
if (null != bondtranslucency) {
bondtranslucency.initTree(this.defaultBondTranslucency);
}
if (null != hBondProperties) {
hBondProperties.initTree();
}
inInitTree = false;
}
}
private void initLocalVariables() {
selectedBondTranslucency = defaultBondTranslucency;
}
private boolean inReset = false;
public void reset() {
if (!inReset) {
inReset = true;
resetLocalVariables();
if (null != bondtranslucency) {
bondtranslucency.reset(this.defaultBondTranslucency);
}
if (null != hBondProperties) {
hBondProperties.reset();
}
inReset = false;
}
}
private void resetLocalVariables() {
selectedBondTranslucency = defaultBondTranslucency;
}
public int getDefaultBondTranslucency() {
return defaultBondTranslucency;
}
public int getDefaultHBondSize() {
return hBondProperties.getDefaultHBondSize();
}
public int getDefaultHBondTranslucency() {
return hBondProperties.getDefaultHBondTranslucency();
}
}