@Override
public void currentChanged(ChangeEvent ce) {
DataPointEntry currentEntry = Singleton.getState().getCurrenDataEntry();
if (currentEntry == null) {
modelValueField.setText("--");
snpLocationField.setText("--");
pValueField.setText("--");
rsIdField.setText("--");
intronExonField.setText("--");
regulomeField.setText("--");
snpGeneField.setText("--");
} else {
// System.out.println("currentChanged: " + currentEntry);
SNP snp = currentEntry.getSnp();
Model model = currentEntry.getModel();
DataSet dataSet = currentEntry.getDataSet();
Double negLogPValue = dataSet.getPvalFromSnpModel(snp, model);
modelValueField.setText(model.toString());
DecimalFormat formatter = new DecimalFormat("#,###");
// snpLocationField.setText(snp.getLoc() + "");
snpLocationField.setText(formatter.format(snp.getLoc()));
String outputStr = myFormatter.format(negLogPValue);
pValueField.setText(outputStr);
rsIdField.setText("rs" + snp.getRsId());
intronExonField.setText(snp.getIntronExon().toString());
regulomeField.setText(snp.getRegulome());
snpGeneField.setText(snp.getAssociatedGene());
}
}
public TopDisplayPanel(View view) {
super();
this.view = view;
// this.dataSet = dataSet;
setLayout(new GridBagLayout());
GridBagConstraints gbc = new GridBagConstraints();
gbc.gridx = 10;
gbc.gridy = 10;
gbc.fill = GridBagConstraints.BOTH;
gbc.insets = new Insets(5, 5, 5, 5);
gbc.gridheight = 20;
add(getLeftButton(), gbc);
gbc.gridx = 20;
gbc.weightx = 0.0;
gbc.gridheight = 1;
gbc.insets = new Insets(0, 3, 0, 3);
add(new JLabel("Model"), gbc);
gbc.gridx = 30;
add(new JLabel("RsID"), gbc);
gbc.gridx = 40;
add(new JLabel("SNP Location"), gbc);
gbc.gridx = 50;
add(new JLabel("In/Exon"), gbc);
gbc.gridx = 60;
add(new JLabel("Regulome"), gbc);
gbc.gridx = 70;
add(new JLabel("Gene"), gbc);
gbc.gridx = 80;
gbc.weightx = 0.3;
add(new JLabel("-log p-Val"), gbc);
gbc.gridy = 20;
gbc.gridx = 20;
gbc.weightx = 2.0;
add(getModelValueField(), gbc);
gbc.gridx = 30;
gbc.weightx = 0.2;
add(getRsIdField(), gbc);
gbc.gridx = 40;
gbc.weightx = 0.0;
add(getSNPLocationField(), gbc);
gbc.gridx = 50;
gbc.weightx = 0.0;
add(getIntronExonField(), gbc);
gbc.gridx = 60;
gbc.weightx = 0.0;
add(getRegulomeField(), gbc);
gbc.gridx = 70;
gbc.weightx = 0.5;
add(getSnpGeneField(), gbc);
gbc.gridx = 80;
gbc.weightx = 0.0;
add(getPValueField(), gbc);
gbc.gridy = 10;
gbc.gridx = 100;
gbc.weightx = 0.0;
gbc.insets = new Insets(5, 5, 5, 5);
gbc.gridheight = 20;
add(getRightButton(), gbc);
setBorder(BorderFactory.createBevelBorder(BevelBorder.LOWERED));
StateController stateController = new StateController();
Singleton.getState().addListener(stateController);
}
@Override
public void mainPlotChanged(ChangeEvent ce) {
view = Singleton.getState().getMainView();
}
