@Override
public void run(String token, SearchDomainsParams inputData, String jobId, String outRef)
throws Exception {
DomainSearchTask dst = new DomainSearchTask(tempDir, storage);
DomainAnnotation res = dst.runDomainSearch(token, inputData.getDmsRef(), inputData.getGenome());
saveResult(inputData.getOutWorkspace(), inputData.getOutResultId(), token, res, inputData);
}
private void saveResult(
String ws, String id, String token, DomainAnnotation annRes, SearchDomainsParams inputData)
throws Exception {
saveAnnotation(
storage, token, ws, id, annRes, inputData.getGenome(), inputData, "search_domains");
}
@Override
public String getOutRef(SearchDomainsParams inputData) {
return inputData.getOutWorkspace() + "/" + inputData.getOutResultId();
}