private void createOntologyTable(List<Tuple> tuples, OntologyLoader model) {
int count = 0;
for (OWLClass subClass : model.getTopClasses()) {
recursiveAddTuple("0." + count, subClass, model, tuples);
count++;
}
}
private void recursiveAddTuple(
String termPath, OWLClass cls, OntologyLoader ontologyLoader, List<Tuple> tuples) {
String label = ontologyLoader.getLabel(cls).replaceAll("[^a-zA-Z0-9 ]", " ");
Set<String> synonyms = new HashSet<String>();
synonyms.add(label);
synonyms.addAll(ontologyLoader.getSynonyms(cls));
// listOfChildren.addAll(model.getAssociatedClasses(cls));
StringBuilder alternativeDefinitions = new StringBuilder();
for (Set<OWLClass> alternativeDefinition : ontologyLoader.getAssociatedClasses(cls)) {
StringBuilder newDefinition = new StringBuilder();
for (OWLClass associatedClass : alternativeDefinition) {
if (newDefinition.length() != 0) newDefinition.append(',');
newDefinition.append(associatedClass.getIRI().toString());
}
if (alternativeDefinitions.length() != 0 && newDefinition.length() != 0)
alternativeDefinitions.append("&&&");
alternativeDefinitions.append(newDefinition);
}
if (alternativeDefinitions.length() != 0) {
System.out.println(alternativeDefinitions.toString());
}
for (String synonym : synonyms) {
KeyValueTuple tuple = new KeyValueTuple();
tuple.set(NODE_PATH, termPath);
tuple.set(BOOST, false);
tuple.set(ONTOLOGY_IRI, ontologyIRI);
tuple.set(ONTOLOGY_NAME, ontologyName);
tuple.set(ONTOLOGY_TERM, label);
tuple.set(ONTOLOGY_TERM_IRI, cls.getIRI().toString());
tuple.set(ONTOLOGY_LABEL, ontologyLoader.getOntologyName());
tuple.set(ENTITY_TYPE, "ontologyTerm");
tuple.set(SYNONYMS, synonym.replaceAll("[^a-zA-Z0-9 ]", " "));
tuple.set(ALTERNATIVE_DEFINITION, alternativeDefinitions.toString());
tuples.add(tuple);
}
Set<OWLClass> listOfChildren = ontologyLoader.getChildClass(cls);
if (listOfChildren.size() > 0) {
int i = 0;
for (OWLClass childClass : listOfChildren) {
String childTermPath = termPath + "." + i;
recursiveAddTuple(childTermPath, childClass, ontologyLoader, tuples);
i++;
}
}
}