public class HandlerSequenceId extends HandlerGenomeId {
boolean inLink = false;
boolean inLinkId = false;
private static IMediatorGUI mediatorGUI = MediatorGUI.getInstance();
List<String> sequenceIdList = new ArrayList<String>();
public void startElement(String uri, String localName, String qName, Attributes attributes)
throws SAXException {
if (qName.equalsIgnoreCase("LINK")) {
inLink = true;
}
if (inLink == true) {
if (qName.equalsIgnoreCase("ID")) {
inLinkId = true;
}
}
}
public void endElement(String uri, String localName, String qName) throws SAXException {
// System.out.println("End Element :" + qName);
if (qName.equalsIgnoreCase("LINK")) {
inLink = false;
}
}
public void characters(char ch[], int start, int length) throws SAXException {
if (inLinkId) {
sequenceIdList.add(new String(ch, start, length));
mediatorGUI.updateAquisitionPanel(" _ sequenceId : " + new String(ch, start, length));
inLinkId = false;
}
}
public List<String> getSequenceIdList() {
return sequenceIdList;
}
}
