@Test
public void testNormalizeDiploidLikelihoodMatrixFromLog10() {
double[][] likelihoodMatrix = {
{-90.2, 0, 0},
{-190.1, -2.1, 0},
{-7.0, -17.5, -35.9}
};
double[][] normalizedMatrix = {
{-88.1, 0, 0},
{-188.0, 0.0, 0},
{-4.9, -15.4, -33.8}
};
Assert.assertTrue(
compareDoubleArrays(
LikelihoodCalculationEngine.normalizeDiploidLikelihoodMatrixFromLog10(likelihoodMatrix),
normalizedMatrix));
double[][] likelihoodMatrix2 = {
{-90.2, 0, 0, 0},
{-190.1, -2.1, 0, 0},
{-7.0, -17.5, -35.9, 0},
{-7.0, -17.5, -35.9, -1000.0},
};
double[][] normalizedMatrix2 = {
{-88.1, 0, 0, 0},
{-188.0, 0.0, 0, 0},
{-4.9, -15.4, -33.8, 0},
{-4.9, -15.4, -33.8, -997.9},
};
Assert.assertTrue(
compareDoubleArrays(
LikelihoodCalculationEngine.normalizeDiploidLikelihoodMatrixFromLog10(
likelihoodMatrix2),
normalizedMatrix2));
}
