public void populateMenu(JMenu menu, int flags) {
if (flags == (Plugin.MENU_TOOLS | Plugin.MENU_MID)) {
Sketch sketch = editor.getSketch();
JMenuItem item = new JMenu("Program Bootloader");
item.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
run();
}
});
menu.add(item);
PropertyFile props = sketch.mergeAllProperties();
String blProgs = props.get("bootloader.upload");
if (blProgs == null) {
JMenuItem sub = new JMenuItem("No bootloader programmer defined!");
item.add(sub);
return;
}
String[] progs = blProgs.split("::");
for (String prog : progs) {
JMenuItem sub = new JMenuItem(sketch.parseString(props.get("upload." + prog + ".name")));
sub.setActionCommand(prog);
sub.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
doProgram(e.getActionCommand());
}
});
item.add(sub);
}
}
}
private static void constructMenu() {
final JFrame lFrame = (JFrame) viewModel.get("window.frame");
final JMenuBar lMenuBar = new JMenuBar();
lFrame.setJMenuBar(lMenuBar);
viewModel.put("menu", lMenuBar);
final JMenu lFileMenu = new JMenu("File");
lFileMenu.setMnemonic(KeyEvent.VK_F);
viewModel.put("menu.file", lFileMenu);
lMenuBar.add(lFileMenu);
final JMenuItem lExitItem = new JMenuItem((Action) viewModel.get("action.exit"));
viewModel.put("menu.file.exit", lExitItem);
lFileMenu.add(lExitItem);
final JMenuItem lHelpMenu = new JMenu("Help");
lHelpMenu.setMnemonic(KeyEvent.VK_H);
viewModel.put("menu.help", lHelpMenu);
lMenuBar.add(lHelpMenu);
final JMenuItem lHelpTopicsItem = new JMenuItem((Action) viewModel.get("action.help"));
viewModel.put("menu.help.topics", lHelpTopicsItem);
lHelpMenu.add(lHelpTopicsItem);
final JMenuItem lAboutItem = new JMenuItem((Action) viewModel.get("action.about"));
viewModel.put("menu.help.about", lAboutItem);
lHelpMenu.add(lAboutItem);
}
private void helpButtonActionPerformed(java.awt.event.ActionEvent evt) {
JPopupMenu jp = new JPopupMenu();
JMenuItem mi = new JMenuItem("Help"); // No i18n
JPanel panel = new JPanel();
String msgTxt =
"<html>Drops redundant events/alerts. <br>The suppressed/dropped Events/alerts will not <br>be added to the database. <br>You can choose to suppress all events/alerts <br>or only those that occur after a <br>certain period of time. <br>Refer Admin Guide for details.</html>"; // No i18n
/*JTextArea ep = new JTextArea();
ep.setColumns(20);
ep.setLineWrap(true);
ep.setRows(10);
ep.setBackground(new java.awt.Color(200, 200, 200));
ep.setWrapStyleWord(true);*/
JLabel ep = new JLabel();
ep.setSize(300, 200);
ep.setText(msgTxt);
panel.add(ep);
mi.setLayout(new BorderLayout());
mi.setPreferredSize(panel.getPreferredSize());
mi.setFocusPainted(false);
mi.add(panel, BorderLayout.CENTER);
jp.setLayout(new BorderLayout());
jp.add(mi, BorderLayout.CENTER);
jp.show(helpButton, -60, -60);
}
void GUI() {
setJMenuBar(mainmenu);
mainmenu.add(menu_file);
menu_file.add(submenu_open);
submenu_open.add(content_data);
menu_file.add(submenu_exit);
mainmenu.add(menu_about);
menu_about.add(submenu_about);
setVisible(true);
}
JMenuItem getItem() {
JMenuItem i;
if (null == cmd) {
i = new JMenu(name);
for (MenuElement e : submenu) {
i.add(e.getItem());
}
} else {
i = new JMenuItem(cmd.name());
i.setActionCommand(cmd.name());
i.addActionListener(menuListener);
}
return i;
}
/**
* Generate the "tools" menu. This is imperative, it is written to field {@code toolsMenu}. Reason
* being, when we add (TODO remove) a new tool, we need to refresh just this menu
*/
void refreshToolsMenu() {
List<JComponent> menuItems = new ArrayList<JComponent>(10);
// batch script
MenuAction menuAction = new RunScriptMenuAction("Run Batch Script...", KeyEvent.VK_X, igv);
menuItems.add(MenuAndToolbarUtils.createMenuItem(menuAction));
// igvtools
// menuItems.add(new JSeparator());
menuAction =
new SortTracksMenuAction("Run igvtools...", KeyEvent.VK_T, igv) {
@Override
public void actionPerformed(ActionEvent e) {
IgvToolsGui.launch(false, igv.getGenomeManager().getGenomeId());
}
};
menuItems.add(MenuAndToolbarUtils.createMenuItem(menuAction));
List<JComponent> otherToolMenus = igv.getOtherToolMenus();
if (otherToolMenus.size() > 0) {
for (JComponent entry : otherToolMenus) {
menuItems.add(entry);
}
}
// menuItems.add(new JSeparator());
// -------------------------------------//
// "Add tool" option, for loading cli_plugin from someplace else
JMenuItem addTool = new JMenuItem("Add Tool...");
addTool.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
File pluginFi = FileDialogUtils.chooseFile("Select cli_plugin .xml spec");
if (pluginFi == null) return;
try {
PluginSpecReader.addCustomPlugin(pluginFi.getAbsolutePath());
refreshToolsMenu();
} catch (IOException e1) {
MessageUtils.showErrorMessage("Error loading custom cli_plugin", e1);
}
}
});
// menuItems.add(addTool);
// menuItems.add(new JSeparator());
// -------------------------------------//
for (final PluginSpecReader pluginSpecReader : PluginSpecReader.getPlugins()) {
for (final PluginSpecReader.Tool tool : pluginSpecReader.getTools()) {
final String toolName = tool.name;
boolean toolVisible = tool.visible;
JMenuItem toolMenu;
if (toolVisible) {
final String toolPath = pluginSpecReader.getToolPath(tool);
final String tool_url = tool.toolUrl;
boolean isValid = PluginSpecReader.isToolPathValid(toolPath);
ActionListener invalidActionListener =
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
String msg = String.format("%s executable not found at %s", toolName, toolPath);
if (tool_url != null) {
msg += "<br/>See " + tool_url + " to install";
}
MessageUtils.showMessage(msg);
}
};
toolMenu = new JMenu(toolName);
// Kind of overlaps with the side-pull menu, doesn't look great
// toolMenu.setToolTipText(tool.getAttribute("description"));
for (final PluginSpecReader.Command command : tool.commandList) {
final String cmdName = command.name;
JMenuItem cmdItem = new JMenuItem(cmdName);
toolMenu.add(cmdItem);
if (isValid || toolPath == null) {
cmdItem.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
RunPlugin runPlugin = null;
try {
runPlugin =
new RunPlugin(IGV.getMainFrame(), pluginSpecReader, tool, command);
} catch (IllegalStateException e1) {
MessageUtils.showErrorMessage(e1.getMessage(), e1);
return;
}
runPlugin.setVisible(true);
}
});
cmdItem.setEnabled(true);
} else {
cmdItem.setEnabled(false);
}
}
// Hack so we can have a tool which is just general command line stuff
// Don't let the user change the path in that case
if (tool.defaultPath != null) {
JMenuItem setPathItem = new JMenuItem(String.format("Set path to %s...", toolName));
setPathItem.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
(new SetPluginPathDialog(IGV.getMainFrame(), pluginSpecReader, tool))
.setVisible(true);
refreshToolsMenu();
}
});
toolMenu.add(setPathItem);
}
menuItems.add(toolMenu);
}
}
}
// -------------------------------------//
// -----------SQL DB Tools--------------//
boolean showDBEditor = Globals.isDevelopment();
if (showDBEditor) {
JMenu sqlDBProfileEditor = new JMenu("SQL DB Profile Editor");
JMenuItem createNewProfile = new JMenuItem("Create New Profile");
createNewProfile.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
File file =
FileDialogUtils.chooseFile(
"Save DB Profile", DirectoryManager.getUserDirectory(), FileDialogUtils.SAVE);
if (file != null) {
DBProfileEditor editor =
new DBProfileEditor(IGV.getMainFrame(), file.getAbsolutePath());
editor.setVisible(true);
}
}
});
JMenuItem editExistingProfile = new JMenuItem("Edit Existing Profile");
editExistingProfile.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
File file = FileDialogUtils.chooseFile("Select .dbxml database profile");
if (file != null) {
if (!file.exists()) {}
DBProfileEditor editor =
new DBProfileEditor(IGV.getMainFrame(), file.getAbsolutePath());
editor.setVisible(true);
}
}
});
sqlDBProfileEditor.add(createNewProfile);
sqlDBProfileEditor.add(editExistingProfile);
menuItems.add(sqlDBProfileEditor);
}
// -------------------------------------//
// DataTrack Math------------------------//
if (Globals.isDevelopment()) {
JMenuItem combineDataItem = new JMenuItem("Combine Data Tracks");
combineDataItem.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
CombinedDataSourceDialog dialog = new CombinedDataSourceDialog(IGV.getMainFrame());
dialog.setVisible(true);
}
});
menuItems.add(combineDataItem);
}
// -------------------------------------//
MenuAction toolsMenuAction = new MenuAction("Tools", null);
if (toolsMenu == null) {
toolsMenu = MenuAndToolbarUtils.createMenu(menuItems, toolsMenuAction);
toolsMenu.setName("Tools");
} else {
toolsMenu.removeAll();
for (JComponent item : menuItems) {
toolsMenu.add(item);
}
}
}
