public CrossReference toCrossReference(O cvObject) {
if (cvObject == null) {
throw new IllegalArgumentException("CvObject must not be null. ");
}
// name of the cv is the fullname
String text =
cvObject.getFullName() != null ? cvObject.getFullName() : cvObject.getShortLabel();
String identity = cvObject.getIdentifier();
if (identity == null) {
throw new NullPointerException(
cvObject.getClass().getSimpleName() + "(" + text + ") didn't have an identity");
}
final CvObjectXref idXref =
findMatchingIdentityXref(
cvObject.getXrefs(),
identity); // XrefUtils.getIdentityXref(cvObject, CvDatabase.PSI_MI_MI_REF);
if (idXref != null) {
try {
CrossReference ref = crossRefConverter.createCrossReference(idXref, false);
ref.setText(text);
return ref;
} catch (Exception e) {
throw new RuntimeException("An exception occured while building a cv object : " + text, e);
}
} else {
CrossReference ref =
new CrossReferenceImpl(CrossReferenceConverter.DATABASE_UNKNOWN, identity, text);
return ref;
}
}
