/**
* Uses the calculator with name calcName to construct & display a series for the sg. This should
* be the only way new series' are added to the chart, since we need to keep track of all the
* current series in the sgSeriesMap
*
* @param calcName
* @param sg
*/
protected void addSeriesForSG(String calcName, SequenceGroup sg) {
BaseCounter calc = null;
try {
calc = sgReg.getBaseCounterInstance(calcName, sg);
} catch (IllegalArgumentException ex) {
System.err.println("Could not find base counter of type : " + calcName);
return;
}
List<AbstractSeries> seriesList = sgSeriesMap.get(sg);
if (seriesList == null) {
System.out.println(
"Uh-oh, this sequence group doesn't have an associated list in the sgSeriesMap...");
}
// Make a new series from the calculator
int windowsize = ((Integer) windowSizeSpinner.getValue()).intValue();
int windowStep = ((Integer) windowStepSpinner.getValue()).intValue();
if (usePartitionsBox.isSelected()) {
for (int i = 0; i < sg.getPartitionCount(); i++) {
BaseCounterSeries ser = calc.getWindowSeries(windowsize, windowStep, i);
ser.setPartitionIndex(i);
seriesList.add(ser);
ser.setName(calc.getName() + " - " + sg.getPartitionKeyForIndex(i));
if (ser != null && ser.size() > 0) {
chart.addDataSeries(ser);
chart.repaint();
}
}
} else {
BaseCounterSeries ser = calc.getWindowSeries(windowsize, windowStep);
seriesList.add(ser);
if (sgSeriesMap.size() > 1) {
String name = sg.getName();
if (name == null) {
ser.setName(calc.getName());
} else {
ser.setName(calc.getName() + " - " + sg.getName());
}
}
if (ser != null && ser.size() > 0) {
chart.addDataSeries(ser);
chart.repaint();
}
}
}
