private boolean uploadToBORN(byte[] xmlFile, String filename) {
String documentDir = oscarProperties.getProperty("DOCUMENT_DIR");
boolean success = false;
if (documentDir != null && new File(documentDir).exists()) {
FileOutputStream fos = null;
try {
File f = new File(documentDir + File.separator + filename);
fos = new FileOutputStream(f);
fos.write(xmlFile);
success = BornFtpManager.upload18MEWBVDataToRepository(xmlFile, filename);
} catch (IOException e) {
logger.warn("Unabled to backup file to document dir", e);
} finally {
try {
if (fos != null) fos.close();
} catch (IOException e) {
logger.warn("Fail to close file output stream", e);
}
}
} else {
logger.warn("Cannot find DOCUMENT_DIR");
}
return success;
}
public void updateBorn() {
String rourkeFormName =
oscarProperties.getProperty("born18m_eform_rourke", "Rourke Baby Record");
String nddsFormName =
oscarProperties.getProperty(
"born18m_eform_ndds", "Nipissing District Developmental Screen");
String rpt18mFormName =
oscarProperties.getProperty(
"born18m_eform_report18m", "Summary Report: 18-month Well Baby Visit");
EForm rourkeForm = eformDao.findByName(rourkeFormName);
EForm nddsForm = eformDao.findByName(nddsFormName);
EForm rpt18mForm = eformDao.findByName(rpt18mFormName);
List<Integer> rourkeFormDemoList = new ArrayList<Integer>();
List<Integer> nddsFormDemoList = new ArrayList<Integer>();
List<Integer> rpt18mFormDemoList = new ArrayList<Integer>();
if (rourkeForm == null) logger.error(rourkeFormName + " form not found!");
else buildDemoNos(rourkeForm, rourkeFormDemoList);
if (nddsForm == null) logger.error(nddsFormName + " form not found!");
else buildDemoNos(nddsForm, nddsFormDemoList);
if (rpt18mForm == null) logger.error(rpt18mFormName + " form not found!");
else buildDemoNos(rpt18mForm, rpt18mFormDemoList);
HashMap<Integer, Integer> rourkeFormDemoFdids = new HashMap<Integer, Integer>();
HashMap<Integer, Integer> nddsFormDemoFdids = new HashMap<Integer, Integer>();
HashMap<Integer, Integer> rpt18mFormDemoFdids = new HashMap<Integer, Integer>();
for (Integer demoNo : rourkeFormDemoList) {
Integer fdid = checkRourkeDone(rourkeFormName, demoNo);
if (fdid != null) rourkeFormDemoFdids.put(demoNo, fdid);
}
for (Integer demoNo : nddsFormDemoList) {
Integer fdid = checkNddsDone(nddsFormName, demoNo);
if (fdid != null) nddsFormDemoFdids.put(demoNo, fdid);
}
for (Integer demoNo : rpt18mFormDemoList) {
Integer fdid = checkReport18mDone(rpt18mFormName, demoNo);
if (fdid != null) rpt18mFormDemoFdids.put(demoNo, fdid);
}
// Upload to BORN repository
for (Integer demoNo : rourkeFormDemoFdids.keySet()) {
uploadToBorn(
demoNo,
rourkeFormDemoFdids.get(demoNo),
nddsFormDemoFdids.get(demoNo),
rpt18mFormDemoFdids.get(demoNo));
nddsFormDemoFdids.remove(demoNo);
rpt18mFormDemoFdids.remove(demoNo);
}
for (Integer demoNo : nddsFormDemoFdids.keySet()) {
uploadToBorn(demoNo, null, nddsFormDemoFdids.get(demoNo), rpt18mFormDemoFdids.get(demoNo));
rpt18mFormDemoFdids.remove(demoNo);
}
for (Integer demoNo : rpt18mFormDemoFdids.keySet()) {
if (hasFormUploaded(rourkeFormName, demoNo) && hasFormUploaded(nddsFormName, demoNo)) {
uploadToBorn(demoNo, null, null, rpt18mFormDemoFdids.get(demoNo));
}
}
}
public class BORN18MConnector {
private final String UPLOADED_TO_BORN = "uploaded_to_BORN";
private final String VALUE_YES = "Yes";
private final BornTransmissionLogDao logDao = SpringUtils.getBean(BornTransmissionLogDao.class);
private final DemographicDao demographicDao = SpringUtils.getBean(DemographicDao.class);
private final EFormDao eformDao = SpringUtils.getBean(EFormDao.class);
private final EFormDataDao eformDataDao = SpringUtils.getBean(EFormDataDao.class);
private final EFormValueDao eformValueDao = SpringUtils.getBean(EFormValueDao.class);
private final Logger logger = MiscUtils.getLogger();
private final OscarProperties oscarProperties = OscarProperties.getInstance();
private final String filenameStart =
"BORN_"
+ oscarProperties.getProperty("born18m_orgcode", "")
+ "_18MEWBV_"
+ oscarProperties.getProperty("born18m_env", "T");
public void updateBorn() {
String rourkeFormName =
oscarProperties.getProperty("born18m_eform_rourke", "Rourke Baby Record");
String nddsFormName =
oscarProperties.getProperty(
"born18m_eform_ndds", "Nipissing District Developmental Screen");
String rpt18mFormName =
oscarProperties.getProperty(
"born18m_eform_report18m", "Summary Report: 18-month Well Baby Visit");
EForm rourkeForm = eformDao.findByName(rourkeFormName);
EForm nddsForm = eformDao.findByName(nddsFormName);
EForm rpt18mForm = eformDao.findByName(rpt18mFormName);
List<Integer> rourkeFormDemoList = new ArrayList<Integer>();
List<Integer> nddsFormDemoList = new ArrayList<Integer>();
List<Integer> rpt18mFormDemoList = new ArrayList<Integer>();
if (rourkeForm == null) logger.error(rourkeFormName + " form not found!");
else buildDemoNos(rourkeForm, rourkeFormDemoList);
if (nddsForm == null) logger.error(nddsFormName + " form not found!");
else buildDemoNos(nddsForm, nddsFormDemoList);
if (rpt18mForm == null) logger.error(rpt18mFormName + " form not found!");
else buildDemoNos(rpt18mForm, rpt18mFormDemoList);
HashMap<Integer, Integer> rourkeFormDemoFdids = new HashMap<Integer, Integer>();
HashMap<Integer, Integer> nddsFormDemoFdids = new HashMap<Integer, Integer>();
HashMap<Integer, Integer> rpt18mFormDemoFdids = new HashMap<Integer, Integer>();
for (Integer demoNo : rourkeFormDemoList) {
Integer fdid = checkRourkeDone(rourkeFormName, demoNo);
if (fdid != null) rourkeFormDemoFdids.put(demoNo, fdid);
}
for (Integer demoNo : nddsFormDemoList) {
Integer fdid = checkNddsDone(nddsFormName, demoNo);
if (fdid != null) nddsFormDemoFdids.put(demoNo, fdid);
}
for (Integer demoNo : rpt18mFormDemoList) {
Integer fdid = checkReport18mDone(rpt18mFormName, demoNo);
if (fdid != null) rpt18mFormDemoFdids.put(demoNo, fdid);
}
// Upload to BORN repository
for (Integer demoNo : rourkeFormDemoFdids.keySet()) {
uploadToBorn(
demoNo,
rourkeFormDemoFdids.get(demoNo),
nddsFormDemoFdids.get(demoNo),
rpt18mFormDemoFdids.get(demoNo));
nddsFormDemoFdids.remove(demoNo);
rpt18mFormDemoFdids.remove(demoNo);
}
for (Integer demoNo : nddsFormDemoFdids.keySet()) {
uploadToBorn(demoNo, null, nddsFormDemoFdids.get(demoNo), rpt18mFormDemoFdids.get(demoNo));
rpt18mFormDemoFdids.remove(demoNo);
}
for (Integer demoNo : rpt18mFormDemoFdids.keySet()) {
if (hasFormUploaded(rourkeFormName, demoNo) && hasFormUploaded(nddsFormName, demoNo)) {
uploadToBorn(demoNo, null, null, rpt18mFormDemoFdids.get(demoNo));
}
}
}
private void uploadToBorn(
Integer demographicNo, Integer rourkeFdid, Integer nddsFdid, Integer report18mFdid) {
byte[] born18mXml = generateXml(demographicNo, rourkeFdid, nddsFdid, report18mFdid);
if (born18mXml == null) return;
BornTransmissionLog log = prepareLog();
SimpleDateFormat sdf = new SimpleDateFormat("yyyyMMdd");
String dt = sdf.format(new Date());
String filename = filenameStart + "_" + dt + "_" + getFileSuffix(log.getId()) + ".xml";
boolean uploadOk = uploadToBORN(born18mXml, filename);
if (uploadOk) recordFormSent(demographicNo, rourkeFdid, nddsFdid, report18mFdid);
// update log filename and status (success=true/false)
log.setFilename(filename);
log.setSuccess(uploadOk);
logDao.merge(log);
logger.info("Uploaded [" + filename + "]");
return;
}
private void buildDemoNos(EForm eform, List<Integer> demoList) {
List<EFormData> eformDataList = eformDataDao.findByFormId(eform.getId());
for (EFormData eformData : eformDataList) {
if (!demoList.contains(eformData.getDemographicId()))
demoList.add(eformData.getDemographicId());
}
}
private Integer checkRourkeDone(String rourkeFormName, Integer demographicNo) {
Integer fdid = getMaxFdid(rourkeFormName, demographicNo);
if (fdid == null) return null; // no un-uploaded form data
EFormValue eformValue = eformValueDao.findByFormDataIdAndKey(fdid, "visit_date_18m");
if (eformValue == null) return null;
Date visitDate = UtilDateUtilities.StringToDate(eformValue.getVarValue(), "yyyy-MM-dd");
if (!checkDate18m(visitDate, demographicNo)) return null;
eformValue = eformValueDao.findByFormDataIdAndKey(fdid, "subject");
if (eformValue == null) return null;
if (eformValue.getVarValue() != null
&& eformValue.getVarValue().toLowerCase().contains("draft")) {
return null;
}
// check if the form is for 2-3y or 4-5y visit -> not uploading
eformValue = eformValueDao.findByFormDataIdAndKey(fdid, "visit_date_2y");
if (eformValue != null
&& eformValue.getVarValue() != null
&& !eformValue.getVarValue().trim().isEmpty()) {
return null;
}
eformValue = eformValueDao.findByFormDataIdAndKey(fdid, "visit_date_4y");
if (eformValue != null
&& eformValue.getVarValue() != null
&& !eformValue.getVarValue().trim().isEmpty()) {
return null;
}
return fdid;
}
private Integer checkNddsDone(String nddsFormName, Integer demographicNo) {
Integer fdid = getMaxFdid(nddsFormName, demographicNo);
if (fdid == null) return null; // no un-uploaded form data
EFormValue eformValue = eformValueDao.findByFormDataIdAndKey(fdid, "subject");
if (eformValue == null) return null;
if (eformValue.getVarValue() != null
&& eformValue.getVarValue().toLowerCase().contains("draft")) {
return null;
}
return fdid;
}
private Integer checkReport18mDone(String report18mFormName, Integer demographicNo) {
Integer fdid = getMaxFdid(report18mFormName, demographicNo);
if (fdid == null) return null; // no un-uploaded form data
EFormValue eformValue = eformValueDao.findByFormDataIdAndKey(fdid, "subject");
if (eformValue == null) return null;
if (eformValue.getVarValue() != null
&& eformValue.getVarValue().toLowerCase().contains("draft")) {
return null;
}
return fdid;
}
private byte[] generateXml(
Integer demographicNo, Integer rourkeFdid, Integer nddsFdid, Integer report18mFdid) {
HashMap<String, String> suggestedPrefixes = new HashMap<String, String>();
suggestedPrefixes.put("http://www.w3.org/2001/XMLSchema-instance", "xsi");
XmlOptions opts = new XmlOptions();
opts.setSaveSuggestedPrefixes(suggestedPrefixes);
opts.setSavePrettyPrint();
opts.setSaveNoXmlDecl();
opts.setUseDefaultNamespace();
opts.setSaveNamespacesFirst();
ByteArrayOutputStream os = null;
PrintWriter pw = null;
boolean xmlCreated = false;
BORN18MFormToXML xml = new BORN18MFormToXML(demographicNo);
try {
os = new ByteArrayOutputStream();
pw = new PrintWriter(os, true);
pw.println("<?xml version=\"1.0\" encoding=\"UTF-8\"?>");
xmlCreated = xml.addXmlToStream(pw, opts, rourkeFdid, nddsFdid, report18mFdid);
pw.close();
if (xmlCreated) return os.toByteArray();
} catch (Exception e) {
logger.warn("Unable to add record", e);
}
return null;
}
private BornTransmissionLog prepareLog() {
BornTransmissionLog log = new BornTransmissionLog();
log.setFilename(filenameStart);
log.setSubmitDateTime(new Date());
logDao.persist(log);
return log;
}
private boolean uploadToBORN(byte[] xmlFile, String filename) {
String documentDir = oscarProperties.getProperty("DOCUMENT_DIR");
boolean success = false;
if (documentDir != null && new File(documentDir).exists()) {
FileOutputStream fos = null;
try {
File f = new File(documentDir + File.separator + filename);
fos = new FileOutputStream(f);
fos.write(xmlFile);
success = BornFtpManager.upload18MEWBVDataToRepository(xmlFile, filename);
} catch (IOException e) {
logger.warn("Unabled to backup file to document dir", e);
} finally {
try {
if (fos != null) fos.close();
} catch (IOException e) {
logger.warn("Fail to close file output stream", e);
}
}
} else {
logger.warn("Cannot find DOCUMENT_DIR");
}
return success;
}
private void recordFormSent(
Integer demographicNo, Integer rourkeFdid, Integer nddsFdid, Integer report18mFdid) {
List<Integer> fdids = new ArrayList<Integer>();
if (rourkeFdid != null) fdids.add(rourkeFdid);
if (nddsFdid != null) fdids.add(nddsFdid);
if (report18mFdid != null) fdids.add(report18mFdid);
for (Integer fdid : fdids) {
Integer fid = eformDataDao.find(fdid).getFormId();
EFormValue eformValue = new EFormValue();
eformValue.setDemographicId(Integer.valueOf(demographicNo));
eformValue.setFormDataId(fdid);
eformValue.setFormId(fid);
eformValue.setVarName(UPLOADED_TO_BORN);
eformValue.setVarValue(VALUE_YES);
eformValueDao.persist(eformValue);
}
}
private boolean checkDate18m(Date formDate, Integer demographicNo) {
Calendar babyBirthday = demographicDao.getDemographic(demographicNo.toString()).getBirthDay();
if (UtilDateUtilities.getNumMonths(babyBirthday.getTime(), formDate) < 18) {
return false;
}
return true;
}
private Integer getMaxFdid(String formName, Integer demographicNo) {
List<EFormData> eformDatas =
eformDataDao.findByDemographicIdAndFormName(demographicNo, formName);
if (eformDatas == null || eformDatas.isEmpty()) {
logger.warn(formName + " form data not found for patient #" + demographicNo);
return null;
}
Integer fdid = null;
for (EFormData eformData : eformDatas) {
if (fdid == null || fdid < eformData.getId()) {
fdid = eformData.getId();
}
}
if (!checkUploadedToBorn(fdid)) return fdid;
else return null;
}
private boolean hasFormUploaded(String formName, Integer demographicNo) {
List<EFormData> eformDatas =
eformDataDao.findByDemographicIdAndFormName(demographicNo, formName);
if (eformDatas == null || eformDatas.isEmpty()) {
return false;
}
for (EFormData eformData : eformDatas) {
if (checkUploadedToBorn(eformData.getId())) return true;
}
return false;
}
private boolean checkUploadedToBorn(Integer fdid) {
EFormValue value = eformValueDao.findByFormDataIdAndKey(fdid, UPLOADED_TO_BORN);
return (value != null && value.getVarValue().equals(VALUE_YES));
}
private String getFileSuffix(Integer logId) {
long num = logDao.getSeqNoToday(filenameStart, logId);
String tmp = String.valueOf(num);
while (tmp.length() < 3) {
tmp = "0" + tmp;
}
return tmp;
}
}
