public void read(JarPackageData jarPackage) throws CoreException {
try {
readXML(jarPackage);
} catch (IOException ex) {
String message =
(ex.getLocalizedMessage() != null ? ex.getLocalizedMessage() : ""); // $NON-NLS-1$
throw new CoreException(
new Status(
IStatus.ERROR,
JavaPlugin.getPluginId(),
IJavaStatusConstants.INTERNAL_ERROR,
message,
ex));
} catch (SAXException ex) {
String message =
(ex.getLocalizedMessage() != null ? ex.getLocalizedMessage() : ""); // $NON-NLS-1$
throw new CoreException(
new Status(
IStatus.ERROR,
JavaPlugin.getPluginId(),
IJavaStatusConstants.INTERNAL_ERROR,
message,
ex));
}
}
private CloudServersException parseCloudServersException(HttpResponse response) {
CloudServersException cse = new CloudServersException();
try {
BasicResponseHandler responseHandler = new BasicResponseHandler();
String body = responseHandler.handleResponse(response);
CloudServersFaultXMLParser parser = new CloudServersFaultXMLParser();
SAXParser saxParser = SAXParserFactory.newInstance().newSAXParser();
XMLReader xmlReader = saxParser.getXMLReader();
xmlReader.setContentHandler(parser);
xmlReader.parse(new InputSource(new StringReader(body)));
cse = parser.getException();
} catch (ClientProtocolException e) {
cse = new CloudServersException();
cse.setMessage(e.getLocalizedMessage());
} catch (IOException e) {
cse = new CloudServersException();
cse.setMessage(e.getLocalizedMessage());
} catch (ParserConfigurationException e) {
cse = new CloudServersException();
cse.setMessage(e.getLocalizedMessage());
} catch (SAXException e) {
cse = new CloudServersException();
cse.setMessage(e.getLocalizedMessage());
} catch (FactoryConfigurationError e) {
cse = new CloudServersException();
cse.setMessage(e.getLocalizedMessage());
}
return cse;
}
/**
* Handles a next log entry producing corresponding xml.
*
* @param logEntry log entry
* @throws SVNException
*/
public void handleLogEntry(SVNLogEntry logEntry) throws SVNException {
if (logEntry.getChangedPaths() != null && relativePath != null) {
// convert external path reference to local relative path
Map<String, SVNLogEntryPath> changedPaths = new HashMap<String, SVNLogEntryPath>();
for (SVNLogEntryPath entry : logEntry.getChangedPaths().values()) {
String localPath = entry.getPath().substring(1); // path in svn log start with a '/'
if (localPath.startsWith(relativeUrl)) {
localPath = relativePath + localPath.substring(relativeUrl.length());
}
// can't use entry.setPath(localPath) as FSPathChange duplicate myPath attribute then
// setPath().getPath() don't return same value
changedPaths.put(
localPath,
new SVNLogEntryPath(
localPath, entry.getType(), entry.getCopyPath(), entry.getCopyRevision()));
}
logEntry.getChangedPaths().clear();
logEntry.getChangedPaths().putAll(changedPaths);
}
try {
if (filter == null || !filter.hasExclusionRule() || filter.isIncluded(logEntry)) {
sendToHandler(logEntry);
}
} catch (SAXException e) {
SVNErrorMessage err =
SVNErrorMessage.create(SVNErrorCode.XML_MALFORMED, e.getLocalizedMessage());
SVNErrorManager.error(err, e, SVNLogType.DEFAULT);
}
}
public static final boolean acceptsXmlNeptuneFile(File file, URL schemaURL) {
if (schemaURL == null) {
schemaURL = schemas.get(0);
}
try (FileInputStream in = new FileInputStream(file)) {
Source xmlFile = new StreamSource(in);
try {
SchemaFactory schemaFactory = SchemaFactory.newInstance(XMLConstants.W3C_XML_SCHEMA_NS_URI);
Schema schema = schemaFactory.newSchema(schemaURL);
Validator validator = schema.newValidator();
validator.validate(xmlFile);
Main.info(xmlFile.getSystemId() + " is valid");
return true;
} catch (SAXException e) {
Main.error(xmlFile.getSystemId() + " is NOT valid");
Main.error("Reason: " + e.getLocalizedMessage());
} catch (IOException e) {
Main.error(xmlFile.getSystemId() + " is NOT valid");
Main.error("Reason: " + e.getLocalizedMessage());
}
} catch (IOException e) {
Main.error(e.getMessage());
}
return false;
}
public Book importDocbook(InputStream generatedXhtml) {
HTMLParser handler = new HTMLParser();
SAXParserFactory factory = SAXParserFactory.newInstance();
// création d'un parseur SAX
SAXParser parser;
try {
parser = factory.newSAXParser();
parser.parse(new InputSource(generatedXhtml), handler);
} catch (ParserConfigurationException e) {
e.printStackTrace();
logger.error(e.getLocalizedMessage());
return null;
} catch (SAXException e) {
e.printStackTrace();
logger.error(e.getLocalizedMessage());
return null;
} catch (IOException e) {
e.printStackTrace();
logger.error(e.getLocalizedMessage());
return null;
}
Book book = handler.getBook();
Book toReturn = getBookManager().create(book.getTitle());
return toReturn;
}
public void retrieveNews() {
try {
// HttpClient client = new DefaultHttpClient();
// HttpResponse response = client.execute(new
// HttpGet("http://uaonline.ua.pt/xml/contents_xml.asp"));
// HttpEntity tmpEntity = response.getEntity();
// SAXParser xmlParser = SAXParserFactory.newInstance().newSAXParser();
// XMLReader xmlReader = xmlParser.getXMLReader();
// NewsHandler newsHandler = new NewsHandler();
// xmlReader.setContentHandler(newsHandler);
//
// Reader test = new InputStreamReader(uaNewsURL.openStream());
// InputSource is = new InputSource(test);
// is.setEncoding("ISO-8859-1");
// xmlReader.parse(is);
// return newsHandler.getFeed();
URL uaNewsURL = new URL("http://uaonline.ua.pt/xml/contents_xml.asp");
DocumentBuilder xmlBuilder = DocumentBuilderFactory.newInstance().newDocumentBuilder();
Document xmlNews = xmlBuilder.parse(uaNewsURL.openStream());
XPath query;
NodeList newsItems;
query = XPathFactory.newInstance().newXPath();
Object result = query.compile("/rss/channel/item").evaluate(xmlNews, XPathConstants.NODESET);
newsItems = (NodeList) result;
NewsItem tempItem;
Element tmpElem;
for (int i = 0; i < newsItems.getLength(); i++) {
tmpElem = (Element) newsItems.item(i);
tempItem = parseInfo(tmpElem);
this.addItem(tempItem);
}
} catch (MalformedURLException e) {
System.out.println("NewsFeed: retrieveNews: " + e.getMessage());
System.out.println(
"NewsFeed: retrieveNews: MalformedURLException " + e.getLocalizedMessage());
} catch (ParserConfigurationException e) {
System.out.println("NewsFeed: retrieveNews: " + e.getMessage());
System.out.println(
"NewsFeed: retrieveNews: ParserConfigurationException " + e.getLocalizedMessage());
} catch (IOException e) {
System.out.println("NewsFeed: retrieveNews: " + e.getMessage());
System.out.println("NewsFeed: retrieveNews: IOException " + e.getLocalizedMessage());
} catch (XPathExpressionException e) {
System.out.println("NewsFeed: retrieveNews: " + e.getMessage());
System.out.println(
"NewsFeed: retrieveNews: XPathExpressionException " + e.getLocalizedMessage());
} catch (SAXException e) {
System.out.println("NewsFeed: retrieveNews: " + e.getMessage());
System.out.println("NewsFeed: retrieveNews: SAXException " + e.getLocalizedMessage());
}
}
@Get("xml")
/**
* Method handling fetch requests through HTTP GET
*
* @return XML formatted as per RestDataSource of SmartGWT
* (http://www.smartclient.com/smartgwt/javadoc/com/smartgwt/client/data/RestDataSource.html)
* @throws SAXException
* @throws IOException
*/
public String represent() {
StringWriter xml = new StringWriter();
XmlWriter xmlWriter = new XmlWriter(xml);
ObjectOutputStream out;
try {
xmlWriter.startDocument();
xmlWriter.setDataFormat(true);
xmlWriter.startElement("response");
String clinicId = (String) getRequest().getAttributes().get("clinicId");
if (clinicId != null && clinicId != "") {
xmlWriter.dataElement("status", "0");
xmlConverter.alias("record", ClinicRequirements.class);
try {
out = xmlConverter.createObjectOutputStream(xmlWriter.getWriter(), "data");
// List<ClinicRequirements> connDetailsList = clinicRequirementsBean
// .findByClinicId(Integer.parseInt(clinicId));
//
// for (ClinicRequirements connDetails : connDetailsList) {
// out.writeObject(connDetails);
// }
out.close();
} catch (IOException e) {
System.out.println("Error: " + e.getLocalizedMessage());
xmlWriter.dataElement("status", "-1");
xmlWriter.dataElement("data", "Error with XML converter, please retry! ");
}
} else {
xmlWriter.dataElement("status", "-1");
xmlWriter.dataElement("data", "Clinic Id cannot be empty!");
}
xmlWriter.endElement("response");
xmlWriter.endDocument();
return xml.toString();
} catch (SAXException s) {
System.out.println("Error: " + s.getLocalizedMessage());
return null;
}
}
public void validate(String request, String xsd) throws SoapExceptionServer, SoapExceptionClient {
try {
SOAPBody soapBody = getSOAPBody(request);
Source xmlSource = createSource(soapBody);
Validator validator = createValidator(xsd);
validator.validate(xmlSource);
} catch (SAXException saxParseEx) {
throw new SoapExceptionClient(saxParseEx.getLocalizedMessage(), saxParseEx);
} catch (SoapExceptionClient clientEx) {
throw clientEx;
} catch (IOException | TransformerException ex) {
throw new SoapExceptionServer("Error while validating soap-message.", ex.getMessage(), ex);
}
}
public static Map<String, String> validXML(URL urlSchema, File urlXSD)
throws MalformedURLException, SAXException {
Map<String, String> responseMap = new HashMap<String, String>();
Source xmlFile = new StreamSource(urlXSD);
SchemaFactory schemaFactory = SchemaFactory.newInstance(XMLConstants.W3C_XML_SCHEMA_NS_URI);
Schema schema = schemaFactory.newSchema(urlSchema);
Validator validator = schema.newValidator();
try {
validator.validate(xmlFile);
log.debug(xmlFile.getSystemId() + " valido");
responseMap.put("valid", "success");
} catch (SAXException e) {
log.error(xmlFile.getSystemId() + " no valido");
log.error("Reason: " + e.getLocalizedMessage());
responseMap.put("valid", "false");
responseMap.put("razon", e.getLocalizedMessage());
} catch (IOException e) {
log.error(xmlFile.getSystemId() + " no valido");
log.error("Reason: " + e.getLocalizedMessage());
responseMap.put("valid", "false");
responseMap.put("razon", e.getLocalizedMessage());
}
return responseMap;
}
public static List<Tournament> parseTournaments(InputStream inputStream) {
List<Tournament> tournaments = new ArrayList<Tournament>();
DocumentBuilderFactory docBuilderFactory = DocumentBuilderFactory.newInstance();
try {
DocumentBuilder docBuilder = docBuilderFactory.newDocumentBuilder();
Document document = docBuilder.parse(inputStream);
document.getDocumentElement().normalize();
NodeList noList = document.getElementsByTagName("tournament");
for (int s = 0; s < noList.getLength(); s++) {
Node tournament = noList.item(s);
Tournament tournamentObj = new Tournament();
tournaments.add(tournamentObj);
if (tournament.getNodeType() == Node.ELEMENT_NODE) {
Element tournamentElement = (Element) tournament;
// tournamentElement.getAttribute("author");
tournamentObj.setName(tournamentElement.getAttribute("name"));
Subject subject = new Subject();
tournamentObj.setSubject(subject);
subject.setSubjectName(tournamentElement.getAttribute("subject"));
Log.w("Dharma", "Executed till here");
NodeList questions = tournamentElement.getElementsByTagName("question");
for (int i = 0; i < questions.getLength(); i++) {
Node question = questions.item(i);
if (question.getNodeType() == Node.ELEMENT_NODE) {
Element questionElement = (Element) question;
tournamentObj.addQuestion(parseQuestion(questionElement));
}
}
}
}
} catch (IOException io) {
Log.w("Dharma", io.getLocalizedMessage());
} catch (SAXException sax) {
Log.w("Dharma", sax.getLocalizedMessage());
} catch (ParserConfigurationException pce) {
Log.w("Dharma", pce.getLocalizedMessage());
}
return tournaments;
}
private Element checkXML(WebSession s, String xml) {
try {
XMLReader reader = XMLReaderFactory.createXMLReader();
PasswordChanger changer = new PasswordChanger();
reader.setContentHandler(changer);
reader.parse(new InputSource(new StringReader(xml)));
if (!"101".equals(changer.getId())) {
makeSuccess(s);
return new B(
HtmlEncoder.encode(
"You have changed the passsword for userid "
+ changer.getId()
+ " to '"
+ changer.getPassword()
+ "'"));
} else {
return new StringElement("You changed the password for userid 101. Try again.");
}
} catch (SAXException saxe) {
return new StringElement("The XML was not well formed: " + saxe.getLocalizedMessage());
} catch (IOException ioe) {
return new StringElement(ioe.getLocalizedMessage());
}
}
/*
* (non-Javadoc)
*
* @see com.atcloud.model.ModelService#start()
*/
@Override
public void start() throws ATCloudDataModelException {
LOG.debug("Starting model service...");
try {
schema =
SchemaFactory.newInstance(XMLConstants.W3C_XML_SCHEMA_NS_URI)
.newSchema(
new Source[] {
new StreamSource(schemaFactorySourceLocator.getURL("common-types.xsd")),
new StreamSource(schemaFactorySourceLocator.getURL("configuration.xsd")),
new StreamSource(schemaFactorySourceLocator.getURL("flight.xsd")),
new StreamSource(schemaFactorySourceLocator.getURL("scenario.xsd")),
new StreamSource(schemaFactorySourceLocator.getURL("airport.xsd")),
new StreamSource(schemaFactorySourceLocator.getURL("airspace.xsd")),
new StreamSource(schemaFactorySourceLocator.getURL("user.xsd"))
});
// schema = SchemaFactory.newInstance(XMLConstants.W3C_XML_SCHEMA_NS_URI)
// .newSchema(
// new Source[] {
// new StreamSource(xsdLocation + "/common-types.xsd"),
// new StreamSource(xsdLocation + "/configuration.xsd"),
// new StreamSource(xsdLocation + "/flight.xsd"),
// new StreamSource(xsdLocation + "/scenario.xsd"),
// new StreamSource(xsdLocation + "/airport.xsd"),
// new StreamSource(xsdLocation + "/airspace.xsd"),
// new StreamSource(xsdLocation + "/user.xsd") });
// schema = SchemaFactory.newInstance(XMLConstants.W3C_XML_SCHEMA_NS_URI)
// .newSchema(
// new Source[] {
// new StreamSource(cl.getResource("/common-types.xsd").toURI()
// .toString()),
// new StreamSource(cl.getResource("/configuration.xsd").toURI()
// .toString()),
// new StreamSource(cl.getResource("/flight.xsd").toURI()
// .toString()),
// new StreamSource(cl.getResource("/scenario.xsd").toURI()
// .toString()),
// new StreamSource(cl.getResource("/airport.xsd").toURI()
// .toString()),
// new StreamSource(cl.getResource("/airspace.xsd").toURI()
// .toString()),
// new StreamSource(cl.getResource("/user.xsd").toURI()
// .toString()) });
ctx = JAXBContext.newInstance("com.atcloud.model", cl);
marshaller = ctx.createMarshaller();
marshaller.setSchema(schema);
unmarshaller = ctx.createUnmarshaller();
unmarshaller.setSchema(schema);
} catch (SAXException e) {
throw new ATCloudDataModelException(e.getLocalizedMessage(), e);
} catch (JAXBException e) {
throw new ATCloudDataModelException(e.getLocalizedMessage(), e);
}
LOG.info("Started model service.");
}
public ResponseEntity<?> mint(Samples samples, boolean test, Principal user) {
boolean isXMLValid = true;
Schema schema = null;
// 2. VALIDATE XML ====================================================
SchemaFactory sf = SchemaFactory.newInstance(XMLConstants.W3C_XML_SCHEMA_NS_URI);
try {
URL schemaUrl = new URL(this.IGSN_CSIRO_XSD_URL);
schema = sf.newSchema(schemaUrl);
} catch (SAXException e) {
e.printStackTrace();
return new ResponseEntity<String>(
"Failure retriving schema : " + e.getLocalizedMessage(), HttpStatus.BAD_REQUEST);
} catch (MalformedURLException e) {
log.error("URL malformed for schema location. Recheck config.properties file again.");
return new ResponseEntity<String>(
"Failure retriving schema : " + e.getLocalizedMessage(), HttpStatus.BAD_REQUEST);
}
try {
JAXBContext jc = JAXBContext.newInstance(Samples.class);
Marshaller marshaller = jc.createMarshaller();
marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, Boolean.TRUE);
marshaller.setSchema(schema);
marshaller.marshal(samples, new DefaultHandler());
} catch (JAXBException e) {
e.printStackTrace();
isXMLValid = false;
return new ResponseEntity<String>(
"XML validation failed : " + e.getLocalizedMessage(), HttpStatus.BAD_REQUEST);
}
// 3. VALIDATE SUBNAMESPACE BASED ON USER NAME
// =============================
String usr = null;
List<MintEventLog> mintEventLogs = new ArrayList<MintEventLog>();
if (isXMLValid) {
usr = user.getName();
Set<Prefix> allowedPrefix = prefixEntityService.searchByUser(usr);
for (Sample s : samples.getSample()) {
MintEventLog mintEventLog = new MintEventLog(s.getSampleNumber().getValue());
if (sampleStartsWithAllowedPrefix(allowedPrefix, s)) {
if (s.getLogElement().getEvent().equals(EventType.SUBMITTED)
|| s.getLogElement().getEvent().equals(EventType.UPDATED)) {
try {
SimpleDateFormat metadataDateFormat =
new SimpleDateFormat("YYYY-MM-dd'T'HH:mm:ssXXX");
String igsn =
this.mintService.createRegistryXML(
s.getSampleNumber().getValue(),
s.getLandingPage(),
metadataDateFormat.format(new Date()),
test,
s.getLogElement().getEvent().value());
mintEventLog.setMintLog(MintErrorCode.MINT_SUCCESS, null);
mintEventLog.setHandle("http://hdl.handle.net/" + igsn);
} catch (Exception e) {
mintEventLog.setMintLog(MintErrorCode.MINT_FAILURE, e.getMessage());
mintEventLog.setDatabaseLog(DatabaseErrorCode.NOT_ATTEMPTED, "");
mintEventLogs.add(mintEventLog);
continue;
}
}
try {
if (test) {
sampleEntityService.testInsertSample(s, usr);
} else if (s.getLogElement().getEvent().equals(EventType.SUBMITTED)) {
sampleEntityService.insertSample(s, usr);
} else if (s.getLogElement().getEvent().equals(EventType.DESTROYED)) {
sampleEntityService.destroySample(s);
} else if (s.getLogElement().getEvent().equals(EventType.DEPRECATED)) {
sampleEntityService.deprecateSample(s);
} else if (s.getLogElement().getEvent().equals(EventType.UPDATED)) {
sampleEntityService.updateSample(s, usr);
}
mintEventLog.setDatabaseLog(DatabaseErrorCode.UPDATE_SUCCESS, null);
mintEventLogs.add(mintEventLog);
} catch (Exception e) {
if (e instanceof javax.persistence.PersistenceException
&& e.getCause().getCause().getMessage().contains("duplicate key value")) {
mintEventLog.setDatabaseLog(DatabaseErrorCode.DUPLICATE_KEY, e.getMessage());
mintEventLogs.add(mintEventLog);
} else {
mintEventLog.setDatabaseLog(DatabaseErrorCode.UPDATE_ERROR, e.getMessage());
mintEventLogs.add(mintEventLog);
}
}
} else {
mintEventLog.setMintLog(
MintErrorCode.PREFIX_UNREGISTERED,
"The prefix is not registered to the user:"******"");
mintEventLogs.add(mintEventLog);
}
}
}
return new ResponseEntity<List<MintEventLog>>(mintEventLogs, HttpStatus.OK);
}
