private void handleNotesOntologyChanged(List<OWLOntologyChange> changes) {
try {
OWLOntologyManager notesOntologyManager = notesOntology.getOWLOntologyManager();
if (notesOntologyManager.getOntologyFormat(notesOntology)
instanceof BinaryOWLOntologyDocumentFormat) {
OWLAPIProjectDocumentStore documentStore =
OWLAPIProjectDocumentStore.getProjectDocumentStore(project.getProjectId());
List<OWLOntologyChangeData> infoList = new ArrayList<OWLOntologyChangeData>();
for (OWLOntologyChange change : changes) {
OWLOntologyChangeRecord rec = change.getChangeRecord();
OWLOntologyChangeData info = rec.getData();
infoList.add(info);
}
BinaryOWLOntologyDocumentSerializer serializer = new BinaryOWLOntologyDocumentSerializer();
serializer.appendOntologyChanges(
notesOntologyDocument,
new OntologyChangeDataList(infoList, System.currentTimeMillis()));
} else {
// Swap it over
notesOntologyManager.saveOntology(notesOntology, new BinaryOWLOntologyDocumentFormat());
}
} catch (OWLOntologyStorageException e) {
throw new RuntimeException(e);
} catch (IOException e) {
throw new RuntimeException(e);
}
}
public void loadOntology() {
try {
/*
* --apaitoymena vimata gia th dhmioyrgia mapped ontologias:
* 1.dhmioyrgoyme ena toBeMappedIRI me skopo toy thn antistoixish me
* to local File. 2.dhmioyrgoyme ena File me th dieythynsh ths
* ontologias sto topiko apothikeytiko meso. 3.dhmioyrgoyme enan
* SimpleIRIMapper kai ton prosthetoyme mesw toy manager. o
* SimpleIRIMapper syndeei to toBeMappedIRI poy dwsame arxika, me
* thn fysikh topothesia ths ontologias sto topiko apothikeytiko
* meso. 4.dhmioyrgoyme ena ontologyIRI me akrivws thn idia arxiki
* timh me to toBeMappedIRI to opoio tha einai to IRI ths ontologias
* mas 5.dhmioyrgoyme thn ontologia mas xrhsimopoiwntas to
* manager.loadOntology(ontologyIRI);
*/
String sep = File.separator;
manager = OWLManager.createOWLOntologyManager();
toBeMappedIRI =
IRI.create(
"http://www.semanticweb.org/ontologies/ptyxiaki_v0.6/2011/5/Ontology1308067064597.owl");
// ontFile = new File("../src/ontologyresources/ptyxiaki_v0.8.owl");
ontFile = new File("src/ontologyresources/ptyxiaki_v0.8.owl");
// in case of alternative location on load time when the application is jar'ed!
if (!ontFile.canRead()) {
ontFile = new File("ontologyresources/ptyxiaki_v0.8.owl");
}
manager.addIRIMapper(new SimpleIRIMapper(toBeMappedIRI, IRI.create(ontFile)));
ontologyIRI =
IRI.create(
"http://www.semanticweb.org/ontologies/ptyxiaki_v0.6/2011/5/Ontology1308067064597.owl");
topIxOnt = manager.loadOntology(ontologyIRI);
OWLFactory = manager.getOWLDataFactory();
topIxFormat = manager.getOntologyFormat(topIxOnt);
topIxPrefixManager =
new DefaultPrefixManager(topIxOnt.getOntologyID().getOntologyIRI().toString() + '#');
System.out.println("loaded ontology: " + this.topIxOnt);
System.out.println("from: " + this.manager.getOntologyDocumentIRI(this.topIxOnt));
} catch (OWLException oex) {
logger.info(oex.getMessage());
}
}
private Optional<IRI> getPrefix(String prefixedName) {
OWLOntology activeOntology = modelManager.getActiveOntology();
OWLOntologyManager manager = modelManager.getOWLOntologyManager();
OWLDocumentFormat format = manager.getOntologyFormat(activeOntology);
for (Namespaces ns : Namespaces.values()) {
if (prefixedName.startsWith(ns.name().toLowerCase() + ":")) {
return Optional.of(IRI.create(ns.toString()));
}
}
int colonIndex = prefixedName.indexOf(':');
if (colonIndex > 0 && format != null && format.isPrefixOWLOntologyFormat()) {
PrefixDocumentFormat prefixes = format.asPrefixOWLOntologyFormat();
String prefixLabel = prefixedName.substring(0, colonIndex + 1);
String prefix = prefixes.getPrefix(prefixLabel);
if (prefix != null) {
return Optional.of(IRI.create(prefix));
}
}
return Optional.empty();
}
private boolean isOBOFormat(OWLOntology ontology) {
OWLOntologyManager man = ontology.getOWLOntologyManager();
return man.getOntologyFormat(ontology) instanceof OBOOntologyFormat;
}
/**
* Constructs a short form provider that reuses any prefix name mappings obtainable from the
* format of the specified ontology (the manager will be asked for the ontology format of the
* specified ontology)
*
* @param man The manager
* @param ont The ontology
*/
@Deprecated
public ManchesterOWLSyntaxPrefixNameShortFormProvider(OWLOntologyManager man, OWLOntology ont) {
this(man.getOntologyFormat(ont));
}
