/**
* @param routing
* @param lab_no
* @return True if valid Lab Measurement, else false
*/
private boolean isValidLabMeasurement(List<PatientLabRouting> routing, String lab_no) {
int labNo = Integer.parseInt(lab_no);
for (PatientLabRouting entry : routing) {
if (entry.getLabNo() == labNo) {
return true;
}
}
return false;
}
private void populateDemoNo(String labId) {
PatientLabRoutingDao dao = SpringUtils.getBean(PatientLabRoutingDao.class);
for (PatientLabRouting r :
dao.findByLabNoAndLabType(ConversionUtils.fromIntString(labId), "CML")) {
String d = r.getDemographicNo().toString();
if (!"0".equals(d)) {
this.demographicNo = d;
}
}
}
public boolean isLabLinkedWithPatient(String labId) {
PatientLabRoutingDao dao = SpringUtils.getBean(PatientLabRoutingDao.class);
for (PatientLabRouting p :
dao.findByLabNoAndLabType(ConversionUtils.fromIntString(labId), "BCP")) {
String demo = "" + p.getDemographicNo();
if (demo != null && !demo.trim().equals("0")) {
return true;
}
}
return false;
}
/** Populates ArrayList with labs attached to a consultation request */
public ArrayList<LabResultData> populatePathnetResultsData(
String demographicNo, String consultationId, boolean attached) {
ArrayList<LabResultData> labResults = new ArrayList<LabResultData>();
ArrayList<LabResultData> attachedLabs = new ArrayList<LabResultData>();
try {
ConsultDocsDao dao = SpringUtils.getBean(ConsultDocsDao.class);
for (Object[] o : dao.findDocs(ConversionUtils.fromIntString(consultationId))) {
ConsultDocs c = (ConsultDocs) o[0];
LabResultData lbData = new LabResultData(LabResultData.EXCELLERIS);
lbData.labPatientId = "" + c.getDocumentNo();
attachedLabs.add(lbData);
}
LabResultData lbData = new LabResultData(LabResultData.EXCELLERIS);
LabResultData.CompareId c = lbData.getComparatorId();
Hl7MessageDao hmDao = SpringUtils.getBean(Hl7MessageDao.class);
for (Object[] o :
hmDao.findByDemographicAndLabType(ConversionUtils.fromIntString(demographicNo), "BCP")) {
Hl7Message m = (Hl7Message) o[0];
PatientLabRouting r = (PatientLabRouting) o[1];
lbData.labType = LabResultData.EXCELLERIS;
lbData.segmentID = "" + m.getId();
lbData.labPatientId = "" + r.getId();
lbData.dateTime = findPathnetObservationDate(lbData.segmentID);
lbData.discipline = findPathnetDisipline(lbData.segmentID);
if (attached && Collections.binarySearch(attachedLabs, lbData, c) >= 0)
labResults.add(lbData);
else if (!attached && Collections.binarySearch(attachedLabs, lbData, c) < 0)
labResults.add(lbData);
lbData = new LabResultData(LabResultData.EXCELLERIS);
}
} catch (Exception e) {
logger.error("exception in CMLPopulate:", e);
}
return labResults;
}
private List<Lab> assembleLabs() {
// Gather hl7TextInfo labs
List<PatientLabRouting> tempRouting =
patientLabRoutingDao.findByDemographicAndLabType(demographicNo, "HL7");
List<Hl7TextInfo> tempLabs = new ArrayList<Hl7TextInfo>();
for (PatientLabRouting routing : tempRouting) {
Hl7TextInfo temp = hl7TextInfoDao.findLabId(routing.getLabNo());
if (temp != null) {
tempLabs.add(temp);
}
}
// Short circuit if no labs
if (tempLabs.size() < 1) return null;
// Gather and filter measurements based on existence of lab_no field
List<Measurement> rawMeasurements = measurementDao.findByDemographicNo(demographicNo);
List<Measurement> tempMeasurements = new ArrayList<Measurement>();
for (Measurement entry : rawMeasurements) {
MeasurementsExt isFromLab =
measurementsExtDao.getMeasurementsExtByMeasurementIdAndKeyVal(entry.getId(), "lab_no");
if (isFromLab != null && isValidLabMeasurement(tempRouting, isFromLab.getVal())) {
tempMeasurements.add(entry);
}
}
// Gather measurementsExt
List<List<MeasurementsExt>> tempMeasurementsExt = new ArrayList<List<MeasurementsExt>>();
for (Measurement entry : tempMeasurements) {
List<MeasurementsExt> tempMeasurementsExtElement =
measurementsExtDao.getMeasurementsExtByMeasurementId(entry.getId());
tempMeasurementsExt.add(tempMeasurementsExtElement);
}
// Create Lab Objects
List<Lab> allLabs = new ArrayList<Lab>();
// Group Measurements into Lab Objects
for (Hl7TextInfo labReport : tempLabs) {
Lab labObj = new Lab();
labObj.hl7TextInfo = labReport;
// Group Measurements by Lab Number
int labNumber = labReport.getLabNumber();
List<Measurement> labMeasurementAll = new ArrayList<Measurement>();
List<List<MeasurementsExt>> labMeasurementsExtAll = new ArrayList<List<MeasurementsExt>>();
for (int i = 0; i < tempMeasurementsExt.size(); i++) {
List<MeasurementsExt> entry = tempMeasurementsExt.get(i);
String entryLabNo = getLabExtValue(entry, "lab_no");
// Add related entries to correct Lab
if (labNumber == Integer.valueOf(entryLabNo)) {
labMeasurementsExtAll.add(entry);
entry.get(0).getMeasurementId();
Measurement entryMeasurement = tempMeasurements.get(i);
labMeasurementAll.add(entryMeasurement);
}
}
// Group Measurements into Organizer Groups
int prevGroup = 0;
LabGroup tempGroup = new LabGroup(prevGroup);
for (int i = 0; i < labMeasurementsExtAll.size(); i++) {
String temp = getLabExtValue(labMeasurementsExtAll.get(i), "other_id");
if (temp != null && !temp.isEmpty()) {
int currGroup = parseOtherID(temp)[0];
// Create New Group
if (prevGroup != currGroup) {
labObj.group.add(tempGroup);
prevGroup = currGroup;
tempGroup = new LabGroup(prevGroup);
}
}
// Add current measurement to Organizer Group
tempGroup.measurement.add(labMeasurementAll.get(i));
tempGroup.measurementsExt.add(labMeasurementsExtAll.get(i));
}
// Save final Group
labObj.group.add(tempGroup);
// Save Lab Object
allLabs.add(labObj);
}
return allLabs;
}
