@Test
public void shouldCreateNewEncounter() throws Exception {
executeDataSet("shouldCreateMatchingEncounter.xml");
String encounterDateTimeString = "2011-05-01T12:10:06.000+0530";
Date encounterDateTime = new SimpleDateFormat(dateTimeFormat).parse(encounterDateTimeString);
String json =
"{ \"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", "
+ "\"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", "
+ "\"encounterDateTime\" : \""
+ encounterDateTimeString
+ "\", "
+ "\"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899890\" }";
EncounterTransaction response =
deserialize(
handle(newPostRequest("/rest/emrapi/encounter", json)), EncounterTransaction.class);
assertEquals("1e5d5d48-6b78-11e0-93c3-18a905e044dc", response.getVisitUuid());
Visit visit = visitService.getVisitByUuid(response.getVisitUuid());
assertEquals(1, visit.getEncounters().size());
Encounter encounter = visit.getEncounters().iterator().next();
assertEquals("a76e8d23-0c38-408c-b2a8-ea5540f01b51", encounter.getPatient().getUuid());
assertEquals("2b377dba-62c3-4e53-91ef-b51c68899890", encounter.getEncounterType().getUuid());
assertEquals(encounterDateTime, encounter.getEncounterDatetime());
}
public Visit mergeVisits(Visit preferred, Visit nonPreferred) {
// extend date range of winning
if (OpenmrsUtil.compareWithNullAsEarliest(
nonPreferred.getStartDatetime(), preferred.getStartDatetime())
< 0) {
preferred.setStartDatetime(nonPreferred.getStartDatetime());
}
if (preferred.getStopDatetime() != null
&& OpenmrsUtil.compareWithNullAsLatest(
preferred.getStopDatetime(), nonPreferred.getStopDatetime())
< 0) {
preferred.setStopDatetime(nonPreferred.getStopDatetime());
}
// move encounters from losing into winning
if (nonPreferred.getEncounters() != null) {
for (Encounter e : nonPreferred.getEncounters()) {
e.setPatient(preferred.getPatient());
preferred.addEncounter(e);
encounterService.saveEncounter(e);
}
}
nonPreferred.setEncounters(
null); // we need to manually the encounters from the non-preferred visit before voiding or
// all the encounters we just moved will also get voided!
visitService.voidVisit(
nonPreferred, "EMR - Merge Patients: merged into visit " + preferred.getVisitId());
visitService.saveVisit(preferred);
return preferred;
}
@Test
public void shouldAddNewTestOrder() throws Exception {
executeDataSet("shouldAddNewTestOrder.xml");
String json =
"{ \"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", "
+ "\"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", "
+ "\"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899890\", "
+ "\"encounterDateTime\" : \"2005-01-02T00:00:00.000+0000\", "
+ "\"testOrders\":["
+ "{\"concept\": {\"uuid\": \"d102c80f-1yz9-4da3-bb88-8122ce8868dd\"}, \"instructions\":\"do it\", \"orderTypeUuid\": \"1a61ef2a-250c-11e3-b832-0800271c1b75\" }]}";
EncounterTransaction response =
deserialize(
handle(newPostRequest("/rest/emrapi/encounter", json)), EncounterTransaction.class);
Visit visit = visitService.getVisitByUuid(response.getVisitUuid());
Encounter encounter = visit.getEncounters().iterator().next();
assertEquals(1, encounter.getOrders().size());
Order testOrder = encounter.getOrders().iterator().next();
assertEquals("d102c80f-1yz9-4da3-bb88-8122ce8868dd", testOrder.getConcept().getUuid());
assertEquals("a76e8d23-0c38-408c-b2a8-ea5540f01b51", testOrder.getPatient().getUuid());
assertEquals("f13d6fae-baa9-4553-955d-920098bec08f", testOrder.getEncounter().getUuid());
assertEquals("1a61ef2a-250c-11e3-b832-0800271c1b75", testOrder.getOrderType().getUuid());
assertEquals("do it", testOrder.getInstructions());
}
private Date guessVisitStopDatetime(Visit visit) {
if (visit.getEncounters() == null || visit.getEncounters().size() == 0) {
return visit.getStartDatetime();
}
Iterator<Encounter> iterator = visit.getEncounters().iterator();
Encounter latest = iterator.next();
while (iterator.hasNext()) {
Encounter candidate = iterator.next();
if (OpenmrsUtil.compare(candidate.getEncounterDatetime(), latest.getEncounterDatetime())
> 0) {
latest = candidate;
}
}
return latest.getEncounterDatetime();
}
@Test
public void shouldAddNewDrugOrder() throws Exception {
executeDataSet("shouldAddNewDrugOrder.xml");
String json =
"{ \"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", "
+ "\"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", "
+ "\"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899890\", "
+ "\"encounterDateTime\" : \"2005-01-02T00:00:00.000+0000\", "
+ "\"testOrders\":["
+ "{\"concept\":{ \"uuid\": \"d102c80f-1yz9-4da3-bb88-8122ce8868dd\"}, "
+ "\"instructions\":\"do it\", \"orderTypeUuid\": \"1a61ef2a-250c-11e3-b832-0800271c1b75\" }],"
+ "\"drugOrders\":["
+ "{\"uuid\": \"4d6fb6e0-4950-426c-9a9b-1f97e6037893\","
+ "\"concept\": {\"uuid\": \"29dc4a20-507f-40ed-9545-d47e932483fa\"},"
+ "\"notes\": \"Take as needed\","
+ "\"startDate\": \"2013-09-30T09:26:09.717Z\","
+ "\"endDate\": \"2013-10-02T09:26:09.717Z\","
+ "\"numberPerDosage\": 1,"
+ "\"dosageInstruction\": {\"uuid\": \"632aa422-2696-11e3-895c-0800271c1b75\"},"
+ "\"dosageFrequency\": {\"uuid\": \"6302096d-2696-11e3-895c-0800271c1b75\"},"
+ "\"prn\": true}"
+ "]}";
EncounterTransaction response =
deserialize(
handle(newPostRequest("/rest/emrapi/encounter", json)), EncounterTransaction.class);
Visit visit = visitService.getVisitByUuid(response.getVisitUuid());
Encounter encounter = visit.getEncounters().iterator().next();
assertEquals(2, encounter.getOrders().size());
List<Order> orders = new ArrayList<Order>(encounter.getOrders());
List<DrugOrder> drugOrders = getOrdersOfType(orders, DrugOrder.class);
assertEquals(1, drugOrders.size());
DrugOrder drugOrder = drugOrders.get(0);
assertEquals("a76e8d23-0c38-408c-b2a8-ea5540f01b51", drugOrder.getPatient().getUuid());
assertEquals("f13d6fae-baa9-4553-955d-920098bec08f", drugOrder.getEncounter().getUuid());
assertEquals("29dc4a20-507f-40ed-9545-d47e932483fa", drugOrder.getConcept().getUuid());
assertEquals("1a61ef2a-250c-11e3-b832-9876541c1b75", drugOrder.getOrderType().getUuid());
assertEquals("Take as needed", drugOrder.getInstructions());
assertEquals(new DateTime("2013-09-30T09:26:09.717Z").toDate(), drugOrder.getStartDate());
assertEquals(new DateTime("2013-10-02T09:26:09.717Z").toDate(), drugOrder.getAutoExpireDate());
assertEquals("6302096d-2696-11e3-895c-0800271c1b75", drugOrder.getFrequency());
assertEquals("632aa422-2696-11e3-895c-0800271c1b75", drugOrder.getUnits());
assertEquals("test drug", drugOrder.getDrug().getDisplayName());
assertEquals(Double.valueOf(1), drugOrder.getDose());
assertEquals(true, drugOrder.getPrn());
List<TestOrder> testOrders = getOrdersOfType(orders, TestOrder.class);
assertEquals(1, testOrders.size());
TestOrder testOrder = testOrders.get(0);
assertEquals("d102c80f-1yz9-4da3-bb88-8122ce8868dd", testOrder.getConcept().getUuid());
assertEquals("a76e8d23-0c38-408c-b2a8-ea5540f01b51", testOrder.getPatient().getUuid());
assertEquals("f13d6fae-baa9-4553-955d-920098bec08f", testOrder.getEncounter().getUuid());
assertEquals("1a61ef2a-250c-11e3-b832-0800271c1b75", testOrder.getOrderType().getUuid());
assertEquals("do it", testOrder.getInstructions());
}
@Override
public Encounter transferEncounter(Encounter encounter, Patient patient) {
Encounter encounterCopy = encounter.copyAndAssignToAnotherPatient(patient);
voidEncounter(encounter, "transfer to patient: id = " + patient.getId());
// void visit if voided encounter is the only one
Visit visit = encounter.getVisit();
if (visit != null && visit.getEncounters().size() == 1) {
Context.getVisitService().voidVisit(visit, "Visit does not contain non-voided encounters");
}
return saveEncounter(encounterCopy);
}
private boolean shouldBeClosed(Visit visit) {
if (visit.getStopDatetime() != null) {
return false; // already closed
}
VisitDomainWrapper visitDomainWrapper = domainWrapperFactory.newVisitDomainWrapper(visit);
if (visitDomainWrapper.isAdmitted() || visitDomainWrapper.isAwaitingAdmission()) {
return false; // don't close the visit if patient is admitted or waiting admission
}
Disposition mostRecentDisposition = visitDomainWrapper.getMostRecentDisposition();
if (mostRecentDisposition != null
&& mostRecentDisposition.getKeepsVisitOpen() != null
&& mostRecentDisposition.getKeepsVisitOpen()) {
return false; // don't close the visit if the most recent disposition is one that keeps visit
// opens
}
Date now = new Date();
Date mustHaveSomethingAfter = DateUtils.addHours(now, -emrApiProperties.getVisitExpireHours());
if (OpenmrsUtil.compare(visit.getStartDatetime(), mustHaveSomethingAfter) >= 0) {
return false;
}
if (visit.getEncounters() != null) {
for (Encounter candidate : visit.getEncounters()) {
if (OpenmrsUtil.compare(candidate.getEncounterDatetime(), mustHaveSomethingAfter) >= 0) {
return false;
}
}
}
return true;
}
@Test
public void shouldAddNewObservation() throws Exception {
executeDataSet("shouldAddNewObservation.xml");
String encounterDateTime = "2005-01-02T00:00:00.000+0000";
String json =
"{ \"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", "
+ "\"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", "
+ "\"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899890\", "
+ "\"encounterDateTime\" : \""
+ encounterDateTime
+ "\", "
+ "\"observations\":["
+ "{\"concept\": {\"uuid\": \"d102c80f-1yz9-4da3-bb88-8122ce8868dd\"}, \"conceptName\":\"Should be Ignored\", \"value\":20}, "
+ "{\"concept\": {\"uuid\": \"8f8e7340-a067-11e3-a5e2-0800200c9a66\"}, \"value\": {\"uuid\": \"e7167090-a067-11e3-a5e2-0800200c9a66\"}}, "
+ "{\"concept\": {\"uuid\": \"e102c80f-1yz9-4da3-bb88-8122ce8868dd\"}, \"value\":\"text value\", \"comment\":\"overweight\"}]}";
MockHttpServletResponse response1 = handle(newPostRequest("/rest/emrapi/encounter", json));
EncounterTransaction response = deserialize(response1, EncounterTransaction.class);
Visit visit = visitService.getVisitByUuid(response.getVisitUuid());
Encounter encounter = visit.getEncounters().iterator().next();
assertEquals(3, encounter.getObs().size());
Iterator<Obs> obsIterator = encounter.getObs().iterator();
Map<String, Obs> map = new HashMap<String, Obs>();
while (obsIterator.hasNext()) {
Obs obs = obsIterator.next();
map.put(obs.getConcept().getDatatype().getHl7Abbreviation(), obs);
}
Obs textObservation = map.get(ConceptDatatype.TEXT);
assertEquals("text value", textObservation.getValueText());
assertEquals("a76e8d23-0c38-408c-b2a8-ea5540f01b51", textObservation.getPerson().getUuid());
assertEquals("e102c80f-1yz9-4da3-bb88-8122ce8868dd", textObservation.getConcept().getUuid());
assertEquals("f13d6fae-baa9-4553-955d-920098bec08f", textObservation.getEncounter().getUuid());
assertEquals("overweight", textObservation.getComment());
// TODO : change the observation startTime logic to take current time as start time when
// startTime is not passed by the client
// assertEquals(DateUtils.parseDate(encounterDateTime, dateTimeFormat),
// textObservation.getObsDatetime());
assertEquals(
"e7167090-a067-11e3-a5e2-0800200c9a66",
map.get(ConceptDatatype.CODED).getValueCoded().getUuid());
assertEquals(new Double(20.0), map.get(ConceptDatatype.NUMERIC).getValueNumeric());
}
@Test
public void shouldAddDiagnosesAdObservation() throws Exception {
executeDataSet("baseMetaData.xml");
executeDataSet("diagnosisMetaData.xml");
executeDataSet("shouldAddDiagnosisAsObservation.xml");
String cancerDiagnosisUuid = "d102c80f-1yz9-4da3-bb88-8122ce8868dh";
String encounterDateTime = "2005-01-02T00:00:00.000+0000";
String diagnosisDateTime = "2005-01-02T01:00:00.000+0000";
String postData =
"{"
+ "\"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", "
+ "\"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", "
+ "\"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899891\", "
+ "\"encounterDateTime\" : \""
+ encounterDateTime
+ "\", "
+ "\"diagnoses\":["
+ "{\"order\":\"PRIMARY\", \"certainty\": \"CONFIRMED\", \"codedAnswer\": { \"uuid\": \""
+ cancerDiagnosisUuid
+ "\"}, \"diagnosisDateTime\": \""
+ diagnosisDateTime
+ "\" }"
+ "]"
+ "}";
EncounterTransaction response =
deserialize(
handle(newPostRequest("/rest/emrapi/encounter", postData)), EncounterTransaction.class);
Visit visit = visitService.getVisitByUuid(response.getVisitUuid());
Encounter encounter = visit.getEncounters().iterator().next();
Set<Obs> obsAtTopLevel = encounter.getObsAtTopLevel(false);
assertEquals(1, obsAtTopLevel.size());
Obs parentObservation = obsAtTopLevel.iterator().next();
assertTrue(parentObservation.isObsGrouping());
assertEquals(
DateUtils.parseDate(diagnosisDateTime, dateTimeFormat), parentObservation.getObsDatetime());
Set<Obs> diagnosisObservationGroupMembers = parentObservation.getGroupMembers();
assertEquals(3, diagnosisObservationGroupMembers.size());
ArrayList<String> valueCodedNames = getValuCodedNames(diagnosisObservationGroupMembers);
assertTrue(valueCodedNames.contains("Confirmed"));
assertTrue(valueCodedNames.contains("Primary"));
assertTrue(valueCodedNames.contains("Cancer"));
}
@Test
public void shouldUseVisitStartTimeAsEncounterDateTimeForPreviousVisits() throws Exception {
Date visitStartDate = getDateFromString("2010-09-22 00:00:00");
List<Document> documents = new ArrayList<>();
documents.add(
new Document(
"/radiology/foo-lalala.jpg",
null,
"3f596de5-5caa-11e3-a4c0-0800271c1b75",
null,
null,
false));
VisitDocumentRequest visitDocumentRequest =
new VisitDocumentRequest(
patientUUID,
firstVisitUuid,
visitTypeUUID,
null,
null,
firstEncounterTypeUUID,
null,
documents,
secondProviderUuid,
null,
null);
executeDataSet("visitDocumentData.xml");
// Date currentDate = new Date(System.currentTimeMillis() - 1000);
visitDocumentService.upload(visitDocumentRequest);
Context.flushSession();
Context.clearSession();
Visit visit = visitService.getVisit(1);
Set<Encounter> encounters = visit.getEncounters();
Encounter encounter = getEncounterByTypeUuid(encounters, firstEncounterTypeUUID);
boolean condition = encounter.getEncounterDatetime().compareTo(visitStartDate) >= 0;
assertTrue(condition);
Set<Obs> allObs = encounter.getAllObs();
Obs savedDocument = getSavedDocument(allObs, "3f596de5-5caa-11e3-a4c0-0800271c1b75");
assertTrue(savedDocument.getObsDatetime().compareTo(visitStartDate) == 0);
}
@Test
public void shouldAddNewObservationGroup() throws Exception {
executeDataSet("shouldAddNewObservation.xml");
String encounterDateTime = "2005-01-02T00:00:00.000+0000";
String observationTime = "2005-01-02T12:00:00.000+0000";
String json =
"{ \"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", "
+ "\"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", "
+ "\"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899890\", "
+ "\"encounterDateTime\" : \""
+ encounterDateTime
+ "\", "
+ "\"observations\":["
+ "{\"concept\":{\"uuid\": \"e102c80f-1yz9-4da3-bb88-8122ce8868dd\"}, "
+ " \"groupMembers\" : [{\"concept\":{\"uuid\": \"d102c80f-1yz9-4da3-bb88-8122ce8868dd\"}, \"value\":20, \"comment\":\"overweight\", \"observationDateTime\": \""
+ observationTime
+ "\"}] }"
+ "]}";
EncounterTransaction response =
deserialize(
handle(newPostRequest("/rest/emrapi/encounter", json)), EncounterTransaction.class);
Visit visit = visitService.getVisitByUuid(response.getVisitUuid());
Encounter encounter = (Encounter) visit.getEncounters().toArray()[0];
assertEquals(1, encounter.getObs().size());
Obs obs = (Obs) encounter.getAllObs().toArray()[0];
assertEquals("e102c80f-1yz9-4da3-bb88-8122ce8868dd", obs.getConcept().getUuid());
assertEquals(1, obs.getGroupMembers().size());
Obs member = obs.getGroupMembers().iterator().next();
assertEquals("d102c80f-1yz9-4da3-bb88-8122ce8868dd", member.getConcept().getUuid());
assertEquals(new Double(20.0), member.getValueNumeric());
assertEquals("a76e8d23-0c38-408c-b2a8-ea5540f01b51", member.getPerson().getUuid());
assertEquals("f13d6fae-baa9-4553-955d-920098bec08f", member.getEncounter().getUuid());
assertEquals("overweight", member.getComment());
assertEquals(
new SimpleDateFormat(dateTimeFormat).parse(observationTime), member.getObsDatetime());
}
@Test
public void shouldUseNewDateAsEncounterDateTimeForActiveVisits() throws Exception {
Date visitStartDate = getDateFromString("2014-06-22 00:00:00");
Date encounterDate = getDateFromString("2014-06-23 00:00:00");
Date obsDate = getDateFromString("2014-06-24 00:10:00");
List<Document> documents = new ArrayList<>();
documents.add(new Document("/radiology/fooo-bar.jpg", null, conceptUuid, null, obsDate, false));
visitDocumentRequest =
new VisitDocumentRequest(
patientUUID,
secondVisitUuid,
visitTypeUUID,
visitStartDate,
null,
secondEncounterTypeUUID,
encounterDate,
documents,
firstProviderUuid,
null,
null);
Date currentDate = new Date(System.currentTimeMillis() - 1000);
visitDocumentService.upload(visitDocumentRequest);
Context.flushSession();
Context.clearSession();
Visit visit = visitService.getVisit(2);
Set<Encounter> encounters = visit.getEncounters();
Encounter encounter = getEncounterByTypeUuid(encounters, secondEncounterTypeUUID);
boolean condition = encounter.getEncounterDatetime().compareTo(currentDate) >= 0;
assertTrue(condition);
Set<Obs> allObs = encounter.getAllObs();
Obs savedDocument = getSavedDocument(allObs, conceptUuid);
assertTrue(savedDocument.getObsDatetime().compareTo(currentDate) >= 0);
}
@Test
public void shouldUpdateObservations() throws Exception {
executeDataSet("shouldUpdateObservations.xml");
String json =
"{ \"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", "
+ "\"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", "
+ "\"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899890\","
+ "\"encounterDateTime\" : \"2013-01-01T00:00:00.000+0000\", "
+ "\"observations\":["
+ "{\"uuid\":\"z9fb7f47-e80a-4056-9285-bd798be13c63\", "
+ " \"groupMembers\" : [{\"uuid\":\"ze48cdcb-6a76-47e3-9f2e-2635032f3a9a\", \"value\":20, \"comment\":\"new gc\" }] }, "
+ "{\"uuid\":\"zf616900-5e7c-4667-9a7f-dcb260abf1de\", \"comment\" : \"new c\", \"value\":100 }"
+ "]}";
EncounterTransaction response =
deserialize(
handle(newPostRequest("/rest/emrapi/encounter", json)), EncounterTransaction.class);
Visit visit = visitService.getVisitByUuid(response.getVisitUuid());
Encounter encounter = (Encounter) visit.getEncounters().toArray()[0];
assertEquals(2, encounter.getObsAtTopLevel(false).size());
Iterator<Obs> iterator = encounter.getObsAtTopLevel(false).iterator();
Obs obs1 = iterator.next();
assertEquals("zf616900-5e7c-4667-9a7f-dcb260abf1de", obs1.getUuid());
assertEquals(new Double(100), obs1.getValueNumeric());
assertEquals("new c", obs1.getComment());
Obs obs2 = iterator.next();
assertEquals("z9fb7f47-e80a-4056-9285-bd798be13c63", obs2.getUuid());
assertEquals(1, obs2.getGroupMembers().size());
Obs member = obs2.getGroupMembers().iterator().next();
assertEquals(new Double(20), member.getValueNumeric());
assertEquals("new gc", member.getComment());
}