private void addToObsGroup(Obs obsGroup, Obs member) {
member.setPerson(obsGroup.getPerson());
member.setObsDatetime(obsGroup.getObsDatetime());
member.setLocation(obsGroup.getLocation());
member.setEncounter(obsGroup.getEncounter());
obsGroup.addGroupMember(member);
}
/** @see Encounter#addObs(Obs) */
@Test
@Verifies(value = "should set encounter attribute on obs", method = "addObs(Obs)")
public void addObs_shouldSetEncounterAttributeOnObs() throws Exception {
Encounter encounter = new Encounter();
Obs obs = new Obs();
encounter.addObs(obs);
assertTrue(obs.getEncounter().equals(encounter));
}
@Override
public boolean canHandle(Obs observation) {
CompoundObservation obs = new CompoundObservation(observation);
if (isNotOfKnownTypes(obs)) {
return false;
}
String encounterType = observation.getEncounter().getEncounterType().getName();
return !MRS_ENC_TYPE_LAB_RESULT.equals(encounterType);
}
/** @see java.util.Iterator#next() */
public Map<String, Object> next() {
Locale locale = Context.getLocale();
Obs obs = iter.next();
Map<String, Object> ret = new HashMap<String, Object>();
ret.put("patientId", obs.getPersonId());
ret.put("question", obs.getConcept().getName(locale, false));
ret.put("questionConceptId", obs.getConcept().getConceptId());
ret.put("answer", obs.getValueAsString(locale));
if (obs.getValueCoded() != null) {
ret.put("answerConceptId", obs.getValueCoded());
}
ret.put("obsDatetime", obs.getObsDatetime());
if (obs.getEncounter() != null) {
ret.put("encounterId", obs.getEncounter().getEncounterId());
}
if (obs.getObsGroup() != null) {
ret.put("obsGroupId", obs.getObsGroup().getObsId());
}
return ret;
}
@SuppressWarnings("unused")
public static JSONObject createJsonObservation(Obs obs) {
JSONObject jsonObs = new JSONObject();
jsonObs.put("observation_id", obs.getObsId());
jsonObs.put("concept_name", obs.getConcept().getDisplayString());
Date obsDate = obs.getObsDatetime() == null ? new Date() : obs.getObsDatetime();
SimpleDateFormat formatDateJava = new SimpleDateFormat("dd/MM/yyyy HH:mm:ss");
String dateStr = obsDate.getTime() + "";
jsonObs.put("date", dateStr);
if (obs.getConcept().getDatatype().isNumeric()) { // ADD MORE DATATYPES
ConceptNumeric conceptNumeric =
Context.getConceptService().getConceptNumeric(obs.getConcept().getId());
jsonObs.put("units_of_measurement", conceptNumeric.getUnits());
jsonObs.put("absolute_high", conceptNumeric.getHiAbsolute());
jsonObs.put("absolute_low", conceptNumeric.getLowAbsolute());
jsonObs.put("critical_high", conceptNumeric.getHiCritical());
jsonObs.put("critical_low", conceptNumeric.getLowCritical());
jsonObs.put("normal_high", conceptNumeric.getHiNormal());
jsonObs.put("normal_low", conceptNumeric.getLowNormal());
}
jsonObs.put("value_type", obs.getConcept().getDatatype().getName());
jsonObs.put("value", obs.getValueAsString(Context.getLocale()));
jsonObs.put("location", obs.getLocation().getDisplayString());
jsonObs.put("creator", obs.getCreator().getDisplayString());
Set<EncounterProvider> encounterProviders = obs.getEncounter().getEncounterProviders();
if (encounterProviders != null && encounterProviders.iterator().hasNext()) {
EncounterProvider provider = encounterProviders.iterator().next();
if (provider.getProvider() != null) {
jsonObs.put("provider", provider.getProvider().getName());
}
}
SearchAPI searchAPI = SearchAPI.getInstance();
if (!searchAPI.getSearchPhrase().getPhrase().equals("")
&& !searchAPI.getSearchPhrase().getPhrase().equals("*")) {
for (ChartListItem item : searchAPI.getResults()) {
if (item != null && item instanceof ObsItem && ((ObsItem) item).getObsId() != null) {
if (((ObsItem) item).getObsId() == obs.getObsId()) {
jsonObs.put("chosen", "true");
}
}
}
}
return jsonObs;
}
@Test
public void shouldAddNewObservation() throws Exception {
executeDataSet("shouldAddNewObservation.xml");
String encounterDateTime = "2005-01-02T00:00:00.000+0000";
String json =
"{ \"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", "
+ "\"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", "
+ "\"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899890\", "
+ "\"encounterDateTime\" : \""
+ encounterDateTime
+ "\", "
+ "\"observations\":["
+ "{\"concept\": {\"uuid\": \"d102c80f-1yz9-4da3-bb88-8122ce8868dd\"}, \"conceptName\":\"Should be Ignored\", \"value\":20}, "
+ "{\"concept\": {\"uuid\": \"8f8e7340-a067-11e3-a5e2-0800200c9a66\"}, \"value\": {\"uuid\": \"e7167090-a067-11e3-a5e2-0800200c9a66\"}}, "
+ "{\"concept\": {\"uuid\": \"e102c80f-1yz9-4da3-bb88-8122ce8868dd\"}, \"value\":\"text value\", \"comment\":\"overweight\"}]}";
MockHttpServletResponse response1 = handle(newPostRequest("/rest/emrapi/encounter", json));
EncounterTransaction response = deserialize(response1, EncounterTransaction.class);
Visit visit = visitService.getVisitByUuid(response.getVisitUuid());
Encounter encounter = visit.getEncounters().iterator().next();
assertEquals(3, encounter.getObs().size());
Iterator<Obs> obsIterator = encounter.getObs().iterator();
Map<String, Obs> map = new HashMap<String, Obs>();
while (obsIterator.hasNext()) {
Obs obs = obsIterator.next();
map.put(obs.getConcept().getDatatype().getHl7Abbreviation(), obs);
}
Obs textObservation = map.get(ConceptDatatype.TEXT);
assertEquals("text value", textObservation.getValueText());
assertEquals("a76e8d23-0c38-408c-b2a8-ea5540f01b51", textObservation.getPerson().getUuid());
assertEquals("e102c80f-1yz9-4da3-bb88-8122ce8868dd", textObservation.getConcept().getUuid());
assertEquals("f13d6fae-baa9-4553-955d-920098bec08f", textObservation.getEncounter().getUuid());
assertEquals("overweight", textObservation.getComment());
// TODO : change the observation startTime logic to take current time as start time when
// startTime is not passed by the client
// assertEquals(DateUtils.parseDate(encounterDateTime, dateTimeFormat),
// textObservation.getObsDatetime());
assertEquals(
"e7167090-a067-11e3-a5e2-0800200c9a66",
map.get(ConceptDatatype.CODED).getValueCoded().getUuid());
assertEquals(new Double(20.0), map.get(ConceptDatatype.NUMERIC).getValueNumeric());
}
/**
* This is an equivalent to a copy constructor. Creates a new copy of the given <code>obsToCopy
* </code> with a null obs id
*
* @param obsToCopy The Obs that is going to be copied
* @return a new Obs object with all the same attributes as the given obs
*/
public static Obs newInstance(Obs obsToCopy) {
Obs newObs =
new Obs(
obsToCopy.getPerson(),
obsToCopy.getConcept(),
obsToCopy.getObsDatetime(),
obsToCopy.getLocation());
newObs.setObsGroup(obsToCopy.getObsGroup());
newObs.setAccessionNumber(obsToCopy.getAccessionNumber());
newObs.setValueCoded(obsToCopy.getValueCoded());
newObs.setValueDrug(obsToCopy.getValueDrug());
newObs.setValueGroupId(obsToCopy.getValueGroupId());
newObs.setValueDatetime(obsToCopy.getValueDatetime());
newObs.setValueNumeric(obsToCopy.getValueNumeric());
newObs.setValueModifier(obsToCopy.getValueModifier());
newObs.setValueText(obsToCopy.getValueText());
newObs.setComment(obsToCopy.getComment());
newObs.setOrder(obsToCopy.getOrder());
newObs.setEncounter(obsToCopy.getEncounter());
newObs.setDateStarted(obsToCopy.getDateStarted());
newObs.setDateStopped(obsToCopy.getDateStopped());
newObs.setCreator(obsToCopy.getCreator());
newObs.setDateCreated(obsToCopy.getDateCreated());
newObs.setVoided(obsToCopy.getVoided());
newObs.setVoidedBy(obsToCopy.getVoidedBy());
newObs.setDateVoided(obsToCopy.getDateVoided());
newObs.setVoidReason(obsToCopy.getVoidReason());
newObs.setValueComplex(obsToCopy.getValueComplex());
newObs.setComplexData(obsToCopy.getComplexData());
if (obsToCopy.getGroupMembers() != null)
for (Obs member : obsToCopy.getGroupMembers()) {
// if the obs hasn't been saved yet, no need to duplicate it
if (member.getObsId() == null) newObs.addGroupMember(member);
else newObs.addGroupMember(Obs.newInstance(member));
}
return newObs;
}
@Test
public void shouldAddNewObservationGroup() throws Exception {
executeDataSet("shouldAddNewObservation.xml");
String encounterDateTime = "2005-01-02T00:00:00.000+0000";
String observationTime = "2005-01-02T12:00:00.000+0000";
String json =
"{ \"patientUuid\" : \"a76e8d23-0c38-408c-b2a8-ea5540f01b51\", "
+ "\"visitTypeUuid\" : \"b45ca846-c79a-11e2-b0c0-8e397087571c\", "
+ "\"encounterTypeUuid\": \"2b377dba-62c3-4e53-91ef-b51c68899890\", "
+ "\"encounterDateTime\" : \""
+ encounterDateTime
+ "\", "
+ "\"observations\":["
+ "{\"concept\":{\"uuid\": \"e102c80f-1yz9-4da3-bb88-8122ce8868dd\"}, "
+ " \"groupMembers\" : [{\"concept\":{\"uuid\": \"d102c80f-1yz9-4da3-bb88-8122ce8868dd\"}, \"value\":20, \"comment\":\"overweight\", \"observationDateTime\": \""
+ observationTime
+ "\"}] }"
+ "]}";
EncounterTransaction response =
deserialize(
handle(newPostRequest("/rest/emrapi/encounter", json)), EncounterTransaction.class);
Visit visit = visitService.getVisitByUuid(response.getVisitUuid());
Encounter encounter = (Encounter) visit.getEncounters().toArray()[0];
assertEquals(1, encounter.getObs().size());
Obs obs = (Obs) encounter.getAllObs().toArray()[0];
assertEquals("e102c80f-1yz9-4da3-bb88-8122ce8868dd", obs.getConcept().getUuid());
assertEquals(1, obs.getGroupMembers().size());
Obs member = obs.getGroupMembers().iterator().next();
assertEquals("d102c80f-1yz9-4da3-bb88-8122ce8868dd", member.getConcept().getUuid());
assertEquals(new Double(20.0), member.getValueNumeric());
assertEquals("a76e8d23-0c38-408c-b2a8-ea5540f01b51", member.getPerson().getUuid());
assertEquals("f13d6fae-baa9-4553-955d-920098bec08f", member.getEncounter().getUuid());
assertEquals("overweight", member.getComment());
assertEquals(
new SimpleDateFormat(dateTimeFormat).parse(observationTime), member.getObsDatetime());
}
public static Set<String> generateProvidersFromResults() {
Set<String> res = new HashSet<String>();
SearchAPI searchAPI = SearchAPI.getInstance();
for (ChartListItem item : searchAPI.getResults()) {
if (item != null && item instanceof ObsItem && ((ObsItem) item).getObsId() != null) {
int itemObsId = ((ObsItem) item).getObsId();
Obs obs = Context.getObsService().getObs(itemObsId);
if (obs != null) {
Set<EncounterProvider> encounterProviders = obs.getEncounter().getEncounterProviders();
if (encounterProviders != null && encounterProviders.iterator().hasNext()) {
EncounterProvider provider = encounterProviders.iterator().next();
if (provider.getProvider() != null) {
res.add(provider.getProvider().getName());
}
}
}
}
}
return res;
}
